Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62032973 Chenopodium quinoa HOM05D006499 ORTHO05D007874 3.1e-116 421.8 210 100.0
AUR62017708 Chenopodium quinoa HOM05D006499 ORTHO05D007874 4.0e-87 325.1 179 88.8
EL10Ac9g22960 Beta vulgaris HOM05D006499 ORTHO05D007874 1.5e-81 306.6 202 76.2
Aqoxy3G00285 Aquilegia oxysepala HOM05D006499 ORTHO05D007874 3.3e-73 278.9 198 67.2
Lsat_1_v5_gn_8_80081 Lactuca sativa HOM05D006499 ORTHO05D007874 9.5e-73 277.3 200 70.0
Lalb_Chr04g0258971 Lupinus albus HOM05D006499 ORTHO05D007874 3.1e-71 272.3 201 67.2
Nitab4.5_0000069g0350 Nicotiana tabacum HOM05D006499 ORTHO05D007874 3.1e-71 272.3 203 67.0
Potri.003G003300 Populus trichocarpa HOM05D006499 ORTHO05D007874 3.1e-71 272.3 204 64.7
MSTRG.12232 Avicennia marina HOM05D006499 ORTHO05D007874 6.8e-71 271.2 204 65.7
Medtr1g038530 Medicago truncatula HOM05D006499 ORTHO05D007874 8.9e-71 270.8 201 67.2
Cc02_g20760 Coffea canephora HOM05D006499 ORTHO05D007874 1.2e-70 270.4 203 68.0
Manes.15G079500 Manihot esculenta HOM05D006499 ORTHO05D007874 2.0e-70 269.6 199 66.3
RcHm_v2.0_Chr4g0446811 Rosa chinensis HOM05D006499 ORTHO05D007874 2.6e-70 269.2 206 64.6
Cpa.g.sc92.93 Carica papaya HOM05D006499 ORTHO05D007874 5.8e-70 268.1 198 65.2
Nitab4.5_0004301g0030 Nicotiana tabacum HOM05D006499 ORTHO05D007874 5.8e-70 268.1 203 64.5
TAR622G1217 Trochodendron aralioides HOM05D006499 ORTHO05D007874 1.3e-69 266.9 202 64.9
vmacro04318 Vaccinium macrocarpon HOM05D006499 ORTHO05D007874 1.3e-69 266.9 207 65.2
Solyc01g007920.2 Solanum lycopersicum HOM05D006499 ORTHO05D007874 2.9e-69 265.8 202 64.9
Haze_11761 Corylus avellana HOM05D006499 ORTHO05D007874 3.7e-69 265.4 196 65.3
Sopen01g003460 Solanum pennellii HOM05D006499 ORTHO05D007874 3.7e-69 265.4 202 64.9
Rhsim05G0006600 Rhododendron simsii HOM05D006499 ORTHO05D007874 4.9e-69 265.0 201 64.7
Oeu012342.1 Olea europaea HOM05D006499 ORTHO05D007874 6.4e-69 264.6 200 66.0
Nn4g24968 Nelumbo nucifera HOM05D006499 ORTHO05D007874 8.3e-69 264.2 198 66.2
PGSC0003DMG400016411 Solanum tuberosum HOM05D006499 ORTHO05D007874 8.3e-69 264.2 202 64.9
Medtr1g037830 Medicago truncatula HOM05D006499 ORTHO05D007874 1.1e-68 263.8 201 65.7
Cfa008745 Carpinus fangiana HOM05D006499 ORTHO05D007874 1.4e-68 263.5 196 64.8
Thecc.02G158700 Theobroma cacao HOM05D006499 ORTHO05D007874 1.4e-68 263.5 205 64.9
Peaxi162Scf00021g01915 Petunia axillaris HOM05D006499 ORTHO05D007874 3.2e-68 262.3 203 64.5
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 3.2e-68 262.3 209 62.7
Migut.H01291 Erythranthe guttata HOM05D006499 ORTHO05D007874 4.1e-68 261.9 198 64.6
Psat6g099520 Pisum sativum HOM05D006499 ORTHO05D007874 2.1e-67 259.6 199 64.8
ECA236G1709 Erigeron canadensis HOM05D006499 ORTHO05D007874 2.7e-67 259.2 203 64.0
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 6.0e-67 258.1 198 63.6
Ca_05122_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 6.0e-67 258.1 204 62.7
QL03p017519 Quercus lobata HOM05D006499 ORTHO05D007874 6.0e-67 258.1 196 65.8
QL03p017736 Quercus lobata HOM05D006499 ORTHO05D007874 6.0e-67 258.1 196 65.8
Phvul.003G004400 Phaseolus vulgaris HOM05D006499 ORTHO05D007874 1.7e-66 256.5 201 65.7
SGA_v2.0_scaffold49G18416 Striga asiatica HOM05D006499 ORTHO05D007874 1.7e-66 256.5 201 62.7
Duzib132G0016 Durio zibethinus HOM05D006499 ORTHO05D007874 3.9e-66 255.4 209 62.7
AL6G34450 Arabidopsis lyrata HOM05D006499 ORTHO05D007874 5.1e-66 255.0 201 62.7
COL.COLO4_33044 Corchorus olitorius HOM05D006499 ORTHO05D007874 1.1e-65 253.8 204 62.7
DCAR_026894 Daucus carota HOM05D006499 ORTHO05D007874 1.1e-65 253.8 199 66.3
Prupe.1G348500 Prunus persica HOM05D006499 ORTHO05D007874 1.1e-65 253.8 205 62.0
Glyma.09G283200 Glycine max HOM05D006499 ORTHO05D007874 1.9e-65 253.1 197 63.5
MELO3C011747.2 Cucumis melo HOM05D000045 ORTHO05D007874 3.3e-65 252.3 197 63.5
Actinidia13714 Actinidia chinensis HOM05D006499 ORTHO05D007874 4.3e-65 251.9 192 65.1
Aa31LG11G2680 Aethionema arabicum HOM05D006499 ORTHO05D007874 7.3e-65 251.1 198 62.6
AT5G23230 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 9.6e-65 250.8 201 61.2
Carub.0006s2100 Capsella rubella HOM05D006499 ORTHO05D007874 1.6e-64 250.0 204 58.8
Ciclev10032745m.g Citrus clementina HOM05D006499 ORTHO05D007874 1.6e-64 250.0 196 64.3
CsaV3_5G006120 Cucumis sativus L. HOM05D000045 ORTHO05D007874 1.6e-64 250.0 194 63.4
Gohir.A03G165200 Gossypium hirsutum HOM05D006499 ORTHO05D007874 1.6e-64 250.0 201 62.2
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 1.6e-64 250.0 199 60.8
FAN07G1092 Fragaria x ananassa HOM05D006499 ORTHO05D007874 2.8e-64 249.2 191 65.4
MD16G1003500 Malus domestica HOM05D006499 ORTHO05D007874 3.6e-64 248.8 196 62.8
Gohir.D02G188400 Gossypium hirsutum HOM05D006499 ORTHO05D007874 6.2e-64 248.1 201 61.7
Gorai.005G211100 Gossypium raimondii HOM05D006499 ORTHO05D007874 6.2e-64 248.1 201 61.7
THA.LOC104800852 Tarenaya hassleriana HOM05D006499 ORTHO05D007874 6.2e-64 248.1 201 61.7
Lj2g0027544 Lotus japonicus HOM05D006499 ORTHO05D007874 1.1e-63 247.3 202 61.4
Sed0001124 Sechium edule HOM05D006499 ORTHO05D007874 1.1e-63 247.3 198 62.1
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 1.4e-63 246.9 202 59.4
arahy.Tifrunner.gnm1.ann1.U0P7JC Arachis hypogaea HOM05D000717 ORTHO05D000555 1.8e-63 246.5 195 62.1
Lj6P712T24 Lonicera japonica HOM05D006499 ORTHO05D007874 2.4e-63 246.1 176 69.9
BcaC03g18032 Brassica carinata HOM05D006499 ORTHO05D007874 3.1e-63 245.7 199 62.3
Thhalv10005281m.g Eutrema salsugineum HOM05D006499 ORTHO05D007874 5.2e-63 245.0 199 62.3
Sp2g23920 Schrenkiella parvula HOM05D006499 ORTHO05D007874 5.2e-63 245.0 199 61.8
C02p60950 Brassica napus HOM05D006499 ORTHO05D007874 8.9e-63 244.2 199 62.3
BolC2t12145H Brassica oleracea HOM05D006499 ORTHO05D007874 8.9e-63 244.2 199 62.3
Lj6P717T75 Lonicera japonica HOM05D006499 ORTHO05D007874 8.9e-63 244.2 176 69.3
AT5G23220 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 1.2e-62 243.8 202 58.9
CANSAT01G2706 Cannabis sativa HOM05D006499 ORTHO05D007874 1.5e-62 243.4 206 58.7
ClCG02G014040 Citrullus lanatus HOM05D006499 ORTHO05D007874 2.0e-62 243.0 196 61.7
Lalb_Chr10g0094911 Lupinus albus HOM05D006499 ORTHO05D007874 5.8e-62 241.5 195 63.1
BraA02t09053Z Brassica rapa HOM05D006499 ORTHO05D007874 7.6e-62 241.1 199 60.8
TPR.G29797 Trifolium pratense HOM05D006499 ORTHO05D007874 1.7e-61 240.0 205 61.5
A02p41090 Brassica napus HOM05D006499 ORTHO05D007874 2.2e-61 239.6 199 60.3
FAN12G4256 Fragaria x ananassa HOM05D006499 ORTHO05D007874 2.2e-61 239.6 183 66.1
CSS0024171 Camellia sinensis var. sinensis HOM05D006499 ORTHO05D007874 2.9e-61 239.2 208 62.0
CARHR190310 Cardamine hirsuta HOM05D006499 ORTHO05D007874 2.9e-61 239.2 198 58.6
BcaB07g29862 Brassica carinata HOM05D006499 ORTHO05D007874 8.4e-61 237.7 199 60.3
Duzib132G0405 Durio zibethinus HOM05D006499 ORTHO05D007874 8.4e-61 237.7 209 58.4
arahy.Tifrunner.gnm1.ann1.BULB93 Arachis hypogaea HOM05D006499 ORTHO05D007874 5.4e-60 235.0 201 59.2
ATR0618G206 Amborella trichopoda HOM05D006499 ORTHO05D007874 7.1e-60 234.6 198 58.1
COL.COLO4_06169 Corchorus olitorius HOM05D006499 ORTHO05D007874 6.2e-56 221.5 174 62.6
Os04g0525800 Oryza sativa ssp. japonica HOM05D006499 ORTHO05D007874 7.6e-54 214.5 196 56.1
Zm00001eb076800 Zea mays HOM05D006499 ORTHO05D007874 2.2e-53 213.0 197 56.9
SMO116G0488 Selaginella moellendorffii HOM05D006499 ORTHO05D007874 4.2e-52 208.8 189 55.0
Sc06g0006830 Simmondsia chinensis HOM05D006499 ORTHO05D007874 1.6e-51 206.8 161 65.8
Pp3c12_9010 Physcomitrium patens HOM05D006499 ORTHO05D007874 3.5e-51 205.7 194 53.1
AagrBONN_evm.TU.Sc2ySwM_344.3677 Anthoceros agrestis HOM05D006499 ORTHO05D007874 1.1e-49 200.7 194 55.2
GSVIVG01026240001 Vitis vinifera HOM05D006499 ORTHO05D007874 1.5e-49 200.3 203 55.2
Mapoly0180s0008 Marchantia polymorpha HOM05D006499 ORTHO05D007874 7.3e-49 198.0 200 51.5
SHI02178 Sapria himalayana HOM05D006499 ORTHO05D007874 1.2e-43 180.6 201 47.8
CBR_g16977 Chara braunii HOM05D006499 ORTHO05D007874 1.0e-42 177.6 205 46.3
TAR622G0494 Trochodendron aralioides HOM05D006499 ORTHO05D007874 6.7e-42 174.9 159 55.3
QL04p029592 Quercus lobata HOM05D006499 ORTHO05D007874 6.2e-32 141.7 88 76.1
SEGI_40434 Sequoiadendron giganteum HOM05D006499 ORTHO05D007874 1.5e-30 137.1 92 69.6
CAN.G2.1 Capsicum annuum HOM05D006499 ORTHO05D007874 1.0e-29 134.4 80 78.8
CAN.G655.2 Capsicum annuum HOM05D006499 ORTHO05D007874 2.2e-29 133.3 120 53.3
QL05p044270 Quercus lobata HOM05D000125 ORTHO05D007874 4.2e-28 129.0 79 77.2
arahy.Tifrunner.gnm1.ann1.YHJY2A Arachis hypogaea HOM05D006499 ORTHO05D007874 5.1e-26 122.1 81 72.8
Medtr1g037850 Medicago truncatula HOM05D006499 ORTHO05D007874 1.0e-21 107.8 92 59.8
Nn5g28518 Nelumbo nucifera HOM05D006499 ORTHO05D007874 1.0e-18 97.8 104 52.9
PGR044G1944 Punica granatum HOM05D006499 ORTHO05D007874 2.2e-16 90.1 169 37.3
A03p62810 Brassica napus HOM05D006499 ORTHO05D007874 1.2e-14 84.3 79 53.2
BraA03t15356Z Brassica rapa HOM05D006499 ORTHO05D007874 1.5e-14 84.0 75 54.7
BcaC03g13135 Brassica carinata HOM05D006499 ORTHO05D007874 2.2e-13 80.1 72 55.6
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 1.1e-09 67.8 181 30.4
MCO09G426 Micromonas commoda HOM05D006499 ORTHO05D007874 7.4e-09 65.1 158 30.4
HPP92_003927 Vanilla planifolia HOM05D005658 ORTHO05D006989 4.8e-08 62.4 179 29.1
Nn6g33750 Nelumbo nucifera HOM05D006499 ORTHO05D007874 1.1e-07 61.2 49 53.1
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 1.4e-07 60.8 192 25.5
Ca_29435_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 1.4e-07 60.8 176 26.7
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 1.4e-07 60.8 175 29.1
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 4.1e-07 59.3 178 28.1
Cre10.g448500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 9.1e-07 58.2 213 25.8
SMO147G0229 Selaginella moellendorffii HOM05D005658 ORTHO05D006989 9.1e-07 58.2 177 27.1
PSO210G3060 Papaver somniferum HOM05D005658 ORTHO05D006989 1.2e-06 57.8 180 27.2
Cfa021425 Carpinus fangiana HOM05D006499 ORTHO05D007874 1.5e-06 57.4 186 25.8
Cre17.g706800 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 2.0e-06 57.0 187 26.7
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 4.5e-06 55.8 176 24.4
MCO13G030 Micromonas commoda HOM05D006499 ORTHO05D007874 7.7e-06 55.1 186 26.9


User provided reference genes

Program Settings