Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62032950 Chenopodium quinoa HOM05D006471 ORTHO05D008157 1.3e-174 616.3 304 100.0
AUR62017731 Chenopodium quinoa HOM05D006471 ORTHO05D008157 1.0e-152 543.5 291 94.2
EL10Ac9g22981 Beta vulgaris HOM05D006471 ORTHO05D008157 4.8e-134 481.5 291 82.5
Ah.16g106450 Amaranthus hybridus HOM05D000154 ORTHO05D000092 9.7e-127 457.2 286 79.0
Sc10g0006980 Simmondsia chinensis HOM05D006471 ORTHO05D008157 6.1e-113 411.4 286 71.7
Dinv17647 Davidia involucrata HOM05D000200 ORTHO05D001546 3.0e-112 409.1 294 68.7
GSVIVG01034416001 Vitis vinifera HOM05D006471 ORTHO05D008157 5.7e-111 404.8 270 72.2
Ciclev10031833m.g Citrus clementina HOM05D006471 ORTHO05D008157 7.5e-111 404.4 292 69.9
TWI77G0721 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 7.5e-111 404.4 292 69.2
COL.COLO4_33107 Corchorus olitorius HOM05D006471 ORTHO05D008157 1.3e-110 403.7 292 66.8
Atru.chr11.1240 Acer truncatum HOM05D006471 ORTHO05D008157 6.3e-110 401.4 288 70.1
CSS0032634 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 8.3e-110 401.0 290 67.9
CSS0035224 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 3.1e-109 399.1 290 67.6
TAR628G0373 Trochodendron aralioides HOM05D006471 ORTHO05D008157 4.1e-109 398.7 290 69.3
Duzib248G0471 Durio zibethinus HOM05D000200 ORTHO05D001546 5.4e-109 398.3 288 68.1
Potri.007G075500 Populus trichocarpa HOM05D006471 ORTHO05D008157 7.0e-109 397.9 292 68.2
Manes.04G162800 Manihot esculenta HOM05D006471 ORTHO05D008157 2.0e-108 396.4 292 67.1
Thecc.02G154800 Theobroma cacao HOM05D006471 ORTHO05D008157 3.5e-108 395.6 291 67.7
Cpa.g.sc60.91 Carica papaya HOM05D006471 ORTHO05D008157 5.9e-108 394.8 272 72.4
Actinidia04343 Actinidia chinensis HOM05D006471 ORTHO05D008157 7.7e-108 394.4 290 66.2
MSTRG.428 Avicennia marina HOM05D006471 ORTHO05D008157 1.7e-107 393.3 284 68.7
TWI74G1585 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 1.7e-107 393.3 294 67.3
Gohir.A04G109424 Gossypium hirsutum HOM05D006471 ORTHO05D008157 3.8e-107 392.1 292 66.4
Duzib132G0448 Durio zibethinus HOM05D006471 ORTHO05D008157 5.0e-107 391.7 292 66.8
Gorai.012G135400 Gossypium raimondii HOM05D006471 ORTHO05D008157 5.0e-107 391.7 290 66.6
Psat6g234000 Pisum sativum HOM05D006471 ORTHO05D008157 1.5e-106 390.2 292 66.1
TPR.G4059 Trifolium pratense HOM05D006471 ORTHO05D008157 1.5e-106 390.2 292 66.4
Gohir.D04G148900 Gossypium hirsutum HOM05D006471 ORTHO05D008157 1.9e-106 389.8 290 66.2
MD16G1004200 Malus domestica HOM05D006471 ORTHO05D008157 1.9e-106 389.8 294 67.7
DCAR_002605 Daucus carota HOM05D000200 ORTHO05D001546 3.3e-106 389.0 267 69.3
PGR142G1667 Punica granatum HOM05D006471 ORTHO05D008157 3.3e-106 389.0 293 67.9
PGSC0003DMG400011512 Solanum tuberosum HOM05D006471 ORTHO05D008157 4.2e-106 388.7 290 69.3
Sopen04g004170 Solanum pennellii HOM05D006471 ORTHO05D008157 5.5e-106 388.3 288 68.8
CiPaw.05G172000 Carya illinoinensis HOM05D006471 ORTHO05D008157 9.5e-106 387.5 288 66.0
Nitab4.5_0005997g0050 Nicotiana tabacum HOM05D006471 ORTHO05D008157 9.5e-106 387.5 272 71.3
Peaxi162Scf00681g00221 Petunia axillaris HOM05D006471 ORTHO05D008157 9.5e-106 387.5 287 68.3
RcHm_v2.0_Chr4g0446941 Rosa chinensis HOM05D006471 ORTHO05D008157 1.2e-105 387.1 279 68.5
Haze_11788 Corylus avellana HOM05D006471 ORTHO05D008157 1.6e-105 386.7 290 66.2
CsaV3_5G029010 Cucumis sativus L. HOM05D006471 ORTHO05D008157 1.6e-105 386.7 286 67.5
Ca_11258_v3 Cicer arietinum L. HOM05D000200 ORTHO05D001546 2.1e-105 386.3 287 66.9
Solyc04g008990.3 Solanum lycopersicum HOM05D006471 ORTHO05D008157 2.1e-105 386.3 288 68.4
Hma1.2p1_0044F.1_g026290 Hydrangea macrophylla HOM05D006471 ORTHO05D008157 2.8e-105 386.0 291 65.6
Sabra07G0063800 Salix brachista HOM05D006471 ORTHO05D008157 2.8e-105 386.0 288 68.1
Cfa008776 Carpinus fangiana HOM05D006471 ORTHO05D008157 4.7e-105 385.2 288 66.0
Nitab4.5_0004979g0070 Nicotiana tabacum HOM05D006471 ORTHO05D008157 6.1e-105 384.8 267 71.9
CAN.G274.15 Capsicum annuum HOM05D006471 ORTHO05D008157 6.8e-104 381.3 290 68.3
Medtr1g114560 Medicago truncatula HOM05D006471 ORTHO05D008157 1.2e-103 380.6 270 69.3
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 1.5e-103 380.2 271 67.9
Nn2g12513 Nelumbo nucifera HOM05D006471 ORTHO05D008157 1.5e-103 380.2 270 67.0
FvH4_4g37140 Fragaria vesca HOM05D006471 ORTHO05D008157 2.6e-103 379.4 292 66.4
MSTRG.8091 Avicennia marina HOM05D006471 ORTHO05D008157 4.4e-103 378.6 288 65.3
Lj3A846G60 Lonicera japonica HOM05D006471 ORTHO05D008157 4.4e-103 378.6 269 69.5
Cfa014781 Carpinus fangiana HOM05D006857 ORTHO05D008679 5.7e-103 378.3 271 67.2
Glyma.10G286400 Glycine max HOM05D006471 ORTHO05D008157 7.5e-103 377.9 292 64.4
Lj5g0013377 Lotus japonicus HOM05D006471 ORTHO05D008157 2.2e-102 376.3 292 64.7
Nn8g40194 Nelumbo nucifera HOM05D006471 ORTHO05D008157 4.9e-102 375.2 271 65.7
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 6.3e-102 374.8 292 64.0
Lsat_1_v5_gn_0_15460 Lactuca sativa HOM05D006471 ORTHO05D008157 6.3e-102 374.8 292 65.1
Aqoxy2G00030 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 8.3e-102 374.4 270 66.3
CANSAT78G1799 Cannabis sativa HOM05D006471 ORTHO05D008157 8.3e-102 374.4 270 68.1
Eucgr.G02586 Eucalyptus grandis HOM05D006471 ORTHO05D008157 1.4e-101 373.6 290 64.5
Thhalv10013886m.g Eutrema salsugineum HOM05D006471 ORTHO05D008157 1.4e-101 373.6 290 65.5
HanXRQChr03g0076951 Helianthus annuus HOM05D006471 ORTHO05D008157 1.8e-101 373.2 269 66.5
Migut.L00869 Erythranthe guttata HOM05D006471 ORTHO05D008157 2.4e-101 372.9 295 63.7
PSO782G0560 Papaver somniferum HOM05D006471 ORTHO05D008157 2.4e-101 372.9 272 66.9
CARHR204730 Cardamine hirsuta HOM05D006471 ORTHO05D008157 3.2e-101 372.5 288 64.2
MBI06_g44273_MAGBIO Magnolia biondii HOM05D006471 ORTHO05D008157 1.2e-100 370.5 293 63.8
AT5G23330 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 1.6e-100 370.2 292 63.0
Rhsim12G0193800 Rhododendron simsii HOM05D006471 ORTHO05D008157 2.0e-100 369.8 287 64.1
Carub.0006s0724 Capsella rubella HOM05D006471 ORTHO05D008157 2.7e-100 369.4 288 64.2
AL6G18780 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 3.5e-100 369.0 288 64.6
Phvul.007G014500 Phaseolus vulgaris HOM05D006471 ORTHO05D008157 3.5e-100 369.0 292 62.7
VMungo0720G2382 Vigna mungo HOM05D006471 ORTHO05D008157 3.5e-100 369.0 292 62.3
PSO170G1614 Papaver somniferum HOM05D006471 ORTHO05D008157 2.3e-99 366.3 272 66.2
Sp6g34600 Schrenkiella parvula HOM05D006471 ORTHO05D008157 2.3e-99 366.3 290 63.1
Aqoxy2G01235 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 2.9e-99 365.9 270 64.8
SalBow2G1748 Salvia bowleyana HOM05D006471 ORTHO05D008157 5.0e-99 365.2 288 63.5
AT5G08340 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 1.9e-98 363.2 288 63.5
Sed0003381 Sechium edule HOM05D006471 ORTHO05D008157 1.9e-98 363.2 288 65.6
BcaB01g05607 Brassica carinata HOM05D006471 ORTHO05D008157 1.6e-97 360.1 288 62.2
Lalb_Chr06g0163931 Lupinus albus HOM05D006471 ORTHO05D008157 2.1e-97 359.8 289 61.6
ClCG02G014150 Citrullus lanatus HOM05D006471 ORTHO05D008157 2.8e-97 359.4 325 57.8
AL6G34590 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 4.7e-97 358.6 294 62.2
A03p03780 Brassica napus HOM05D006471 ORTHO05D008157 8.0e-97 357.8 289 62.3
BraA03t09725Z Brassica rapa HOM05D006471 ORTHO05D008157 8.0e-97 357.8 289 62.3
SGA_v2.0_scaffold92G28263 Striga asiatica HOM05D006471 ORTHO05D008157 1.0e-96 357.5 287 62.4
vmacro16923 Vaccinium macrocarpon HOM05D006471 ORTHO05D008157 1.0e-96 357.5 274 63.5
THA.LOC104800739 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 1.4e-96 357.1 291 61.2
BcaB01g05611 Brassica carinata HOM05D006471 ORTHO05D008157 1.8e-96 356.7 272 63.6
ECA240G3241 Erigeron canadensis HOM05D006471 ORTHO05D008157 3.1e-96 355.9 251 68.9
C03p04260 Brassica napus HOM05D006471 ORTHO05D008157 4.0e-96 355.5 289 61.9
BolC3t12958H Brassica oleracea HOM05D006471 ORTHO05D008157 4.0e-96 355.5 289 61.9
CARHR190210 Cardamine hirsuta HOM05D006471 ORTHO05D008157 2.9e-94 349.4 287 62.7
THA.LOC104818378 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 2.9e-94 349.4 298 60.1
CDE02G4670 Ceratophyllum demersum HOM05D006471 ORTHO05D008157 1.9e-90 336.7 276 60.5
MELO3C011756.2 Cucumis melo HOM05D006471 ORTHO05D008157 3.3e-90 335.9 375 49.9
unitig_749.g13340 Utricularia gibba HOM05D006471 ORTHO05D008157 9.5e-90 334.3 263 63.5
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 4.7e-89 332.0 285 60.4
SGA_v2.0_scaffold42G16129 Striga asiatica HOM05D006471 ORTHO05D008157 2.0e-87 326.6 315 55.9
arahy.Tifrunner.gnm1.ann1.V4ETXF Arachis hypogaea HOM05D006471 ORTHO05D008157 3.4e-87 325.9 341 53.1
Oeu006329.1 Olea europaea HOM05D006471 ORTHO05D008157 3.4e-87 325.9 289 59.2
FAN17G0671 Fragaria x ananassa HOM05D006471 ORTHO05D008157 7.5e-87 324.7 285 61.1
ATR0665G473 Amborella trichopoda HOM05D006471 ORTHO05D008157 1.7e-86 323.6 290 60.3
Cc00_g09970 Coffea canephora HOM05D006471 ORTHO05D008157 3.7e-86 322.4 286 60.8
FAN07G1501 Fragaria x ananassa HOM05D002605 ORTHO05D002842 4.9e-86 322.0 264 62.9
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 4.1e-85 318.9 244 64.8
Prupe.1G349200 Prunus persica HOM05D006471 ORTHO05D008157 2.1e-81 306.6 231 65.8
Os03g0801700 Oryza sativa ssp. japonica HOM05D006471 ORTHO05D008157 4.7e-81 305.4 278 55.4
Zm00001eb061200 Zea mays HOM05D006471 ORTHO05D008157 8.1e-81 304.7 277 56.7
QL08p056974 Quercus lobata HOM05D006471 ORTHO05D008157 5.8e-79 298.5 224 65.6
HPP92_017784 Vanilla planifolia HOM05D006471 ORTHO05D008157 1.1e-77 294.3 276 55.4
SEGI_40912 Sequoiadendron giganteum HOM05D006471 ORTHO05D008157 1.9e-74 283.5 316 50.9
MD13G1003200 Malus domestica HOM05D006471 ORTHO05D008157 2.0e-71 273.5 174 74.7
Pp3c5_28930 Physcomitrium patens HOM05D006471 ORTHO05D008157 4.4e-71 272.3 295 48.5
Carub.0006s2111 Capsella rubella HOM05D006471 ORTHO05D008157 1.7e-70 270.4 230 60.4
Mapoly0019s0104 Marchantia polymorpha HOM05D006471 ORTHO05D008157 3.5e-68 262.7 295 50.2
Pp3c14_5150 Physcomitrium patens HOM05D006471 ORTHO05D008157 1.4e-61 240.7 271 46.9
SMO141G0020 Selaginella moellendorffii HOM05D006471 ORTHO05D008157 7.9e-60 235.0 190 57.9
Glyma.20G102800 Glycine max HOM05D006471 ORTHO05D008157 1.4e-53 214.2 292 43.5
AagrBONN_evm.TU.Sc2ySwM_362.1554 Anthoceros agrestis HOM05D006471 ORTHO05D008157 1.6e-41 174.1 212 45.3
FAN12G2193 Fragaria x ananassa HOM05D006471 ORTHO05D008157 1.4e-40 171.0 138 64.5
MCO07G267 Micromonas commoda HOM05D006471 ORTHO05D008157 1.4e-40 171.0 246 41.5
Sc06g0004050 Simmondsia chinensis HOM05D006471 ORTHO05D008157 1.8e-40 170.6 145 66.2
Cre13.g607600 Chlamydomonas reinhardtii HOM05D006471 ORTHO05D008157 6.9e-24 115.5 328 29.0
QL08p056966 Quercus lobata HOM05D006471 ORTHO05D008157 2.7e-20 103.6 63 76.2
Carub.0006s2110 Capsella rubella HOM05D006471 ORTHO05D008157 2.6e-18 97.1 67 70.1
BolC9t53696H Brassica oleracea HOM05D006471 ORTHO05D008157 2.1e-12 77.4 84 48.8
arahy.Tifrunner.gnm1.ann1.SQAN1F Arachis hypogaea HOM05D006471 ORTHO05D008157 8.0e-12 75.5 52 69.2


User provided reference genes

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