Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62032899 Chenopodium quinoa HOM05D006753 ORTHO05D008521 4.8e-53 211.1 119 100.0
AUR62017753 Chenopodium quinoa HOM05D006753 ORTHO05D008521 5.1e-47 191.0 118 88.1
AUR62020818 Chenopodium quinoa HOM05D006753 ORTHO05D008521 3.5e-40 168.3 119 83.2
EL10Ac9g23017 Beta vulgaris HOM05D006753 ORTHO05D008521 3.7e-37 158.3 118 73.7
Sc21g0003760 Simmondsia chinensis HOM05D006753 ORTHO05D008521 6.7e-31 137.5 118 63.6
Medtr1g115255 Medicago truncatula HOM05D006753 ORTHO05D008521 1.3e-29 133.3 123 64.2
Lalb_Chr02g0144111 Lupinus albus HOM05D006753 ORTHO05D008521 2.8e-29 132.1 119 60.5
Duzib052G0750 Durio zibethinus HOM05D006753 ORTHO05D008521 6.2e-29 131.0 116 62.9
Phvul.007G012200 Phaseolus vulgaris HOM05D006753 ORTHO05D008521 8.2e-29 130.6 125 60.0
Nn3g18540 Nelumbo nucifera HOM05D006753 ORTHO05D008521 1.1e-28 130.2 118 62.7
Glyma.10G288900 Glycine max HOM05D006753 ORTHO05D008521 1.8e-28 129.4 124 59.7
Duzib132G0454 Durio zibethinus HOM05D006753 ORTHO05D008521 3.1e-28 128.6 115 61.7
TAR629G2108 Trochodendron aralioides HOM05D006753 ORTHO05D008521 3.1e-28 128.6 117 59.8
MD13G1001300 Malus domestica HOM05D006753 ORTHO05D008521 4.1e-28 128.3 115 61.7
Manes.04G161100 Manihot esculenta HOM05D006753 ORTHO05D008521 5.3e-28 127.9 117 63.2
PGR044G1510 Punica granatum HOM05D006753 ORTHO05D008521 5.3e-28 127.9 117 61.5
TWI53G0448 Tripterygium wilfordii HOM05D006753 ORTHO05D008521 5.3e-28 127.9 116 59.5
FAN17G2405 Fragaria x ananassa HOM05D006753 ORTHO05D008521 9.0e-28 127.1 116 61.2
Thecc.02G152400 Theobroma cacao HOM05D006753 ORTHO05D008521 9.0e-28 127.1 115 63.5
Cfa018673 Carpinus fangiana HOM05D006753 ORTHO05D008521 1.2e-27 126.7 117 59.0
COL.COLO4_33141 Corchorus olitorius HOM05D006753 ORTHO05D008521 1.2e-27 126.7 125 57.6
FvH4_4g37311 Fragaria vesca HOM05D006753 ORTHO05D008521 1.5e-27 126.3 116 60.3
Lj5g0026283 Lotus japonicus HOM05D006753 ORTHO05D008521 2.6e-27 125.6 113 61.9
RcHm_v2.0_Chr4g0447151 Rosa chinensis HOM05D006753 ORTHO05D008521 4.5e-27 124.8 116 59.5
GSVIVG01034354001 Vitis vinifera HOM05D006753 ORTHO05D008521 4.5e-27 124.8 118 58.5
MELO3C011766.2 Cucumis melo HOM05D006753 ORTHO05D008521 5.8e-27 124.4 116 60.3
CsaV3_5G029140 Cucumis sativus L. HOM05D006753 ORTHO05D008521 5.8e-27 124.4 116 59.5
FAN07G1749 Fragaria x ananassa HOM05D006753 ORTHO05D008521 7.6e-27 124.0 116 60.3
QL01p000327 Quercus lobata HOM05D006753 ORTHO05D008521 7.6e-27 124.0 115 60.0
Ciclev10017207m.g Citrus clementina HOM05D006753 ORTHO05D008521 2.2e-26 122.5 116 58.6
Ca_11278_v3 Cicer arietinum L. HOM05D006753 ORTHO05D008521 6.5e-26 120.9 117 59.8
Sed0019092 Sechium edule HOM05D006753 ORTHO05D008521 1.9e-25 119.4 115 56.5
VMungo0720G0065 Vigna mungo HOM05D006753 ORTHO05D008521 2.5e-25 119.0 124 57.3
ATR0124G001 Amborella trichopoda HOM05D006753 ORTHO05D008521 4.2e-25 118.2 116 59.5
MSTRG.13663 Avicennia marina HOM05D006753 ORTHO05D008521 4.2e-25 118.2 117 58.1
Os10g0491900 Oryza sativa ssp. japonica HOM05D006753 ORTHO05D008521 4.2e-25 118.2 113 57.5
CANSAT78G0938 Cannabis sativa HOM05D006753 ORTHO05D008521 7.2e-25 117.5 118 55.1
Sopen03g009600 Solanum pennellii HOM05D006753 ORTHO05D008521 7.2e-25 117.5 121 52.9
CDE05G2438 Ceratophyllum demersum HOM05D006753 ORTHO05D008521 9.3e-25 117.1 118 55.1
Nitab4.5_0000075g0200 Nicotiana tabacum HOM05D006753 ORTHO05D008521 1.2e-24 116.7 124 56.5
Potri.008G003100 Populus trichocarpa HOM05D006753 ORTHO05D008521 1.2e-24 116.7 127 59.8
CDE05G0871 Ceratophyllum demersum HOM05D006753 ORTHO05D008521 1.6e-24 116.3 121 55.4
MBI03_g11899_MAGBIO Magnolia biondii HOM05D006753 ORTHO05D008521 2.1e-24 115.9 114 56.1
Oeu006328.1 Olea europaea HOM05D006753 ORTHO05D008521 3.5e-24 115.2 120 55.0
Psat6g234480 Pisum sativum HOM05D006753 ORTHO05D008521 7.9e-24 114.0 121 57.9
SEGI_09956 Sequoiadendron giganteum HOM05D006753 ORTHO05D008521 7.9e-24 114.0 115 54.8
Zm00001eb044950 Zea mays HOM05D006753 ORTHO05D008521 7.9e-24 114.0 114 56.1
Aqoxy3G04333 Aquilegia oxysepala HOM05D006753 ORTHO05D008521 1.8e-23 112.8 106 64.2
DCAR_023493 Daucus carota HOM05D006753 ORTHO05D008521 1.8e-23 112.8 116 56.9
Sabra08G0001000 Salix brachista HOM05D006753 ORTHO05D008521 2.3e-23 112.5 125 56.8
PGSC0003DMG400018762 Solanum tuberosum HOM05D006753 ORTHO05D008521 2.3e-23 112.5 121 50.4
Atru.chr11.42 Acer truncatum HOM05D006753 ORTHO05D008521 3.0e-23 112.1 116 54.3
Thhalv10002245m.g Eutrema salsugineum HOM05D006753 ORTHO05D008521 3.0e-23 112.1 122 54.1
ClCG11G012760 Citrullus lanatus HOM05D006753 ORTHO05D008521 3.9e-23 111.7 116 55.2
Migut.E00593 Erythranthe guttata HOM05D006753 ORTHO05D008521 5.1e-23 111.3 119 53.8
CiPaw.16G000900 Carya illinoinensis HOM05D006753 ORTHO05D008521 6.7e-23 110.9 116 55.2
Migut.E00658 Erythranthe guttata HOM05D006753 ORTHO05D008521 6.7e-23 110.9 119 55.5
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 6.7e-23 110.9 114 55.3
Rhsim05G0152000 Rhododendron simsii HOM05D006753 ORTHO05D008521 1.5e-22 109.8 105 57.1
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 1.5e-22 109.8 116 55.2
CAN.G815.2 Capsicum annuum HOM05D006753 ORTHO05D008521 1.9e-22 109.4 117 51.3
FvH4_3g18161 Fragaria vesca HOM05D006753 ORTHO05D008521 3.3e-22 108.6 114 54.4
Gohir.D12G135600 Gossypium hirsutum HOM05D006753 ORTHO05D008521 4.3e-22 108.2 115 52.2
Nitab4.5_0008337g0010 Nicotiana tabacum HOM05D006753 ORTHO05D008521 5.7e-22 107.8 119 52.9
SGA_v2.0_scaffold119G32769 Striga asiatica HOM05D006753 ORTHO05D008521 5.7e-22 107.8 116 54.3
Gohir.A12G132000 Gossypium hirsutum HOM05D006753 ORTHO05D008521 9.7e-22 107.1 114 51.8
ECA238G1815 Erigeron canadensis HOM05D006753 ORTHO05D008521 1.3e-21 106.7 120 53.3
Gorai.008G146800 Gossypium raimondii HOM05D006753 ORTHO05D008521 2.8e-21 105.5 115 51.3
Lsat_1_v5_gn_2_64221 Lactuca sativa HOM05D006753 ORTHO05D008521 3.7e-21 105.1 118 54.2
Nitab4.5_0001307g0130 Nicotiana tabacum HOM05D006753 ORTHO05D008521 4.8e-21 104.8 128 51.6
Dinv25482 Davidia involucrata HOM05D006753 ORTHO05D008521 6.3e-21 104.4 118 51.7
AT3G52350 Arabidopsis thaliana HOM05D006753 ORTHO05D008521 8.2e-21 104.0 115 53.9
Sp6g34360 Schrenkiella parvula HOM05D006753 ORTHO05D008521 3.1e-20 102.1 116 52.6
TPR.G4104 Trifolium pratense HOM05D006753 ORTHO05D008521 3.1e-20 102.1 116 53.4
Pp3c15_7650 Physcomitrium patens HOM05D006753 ORTHO05D008521 4.1e-20 101.7 112 51.8
CARHR204450 Cardamine hirsuta HOM05D006753 ORTHO05D008521 1.5e-19 99.8 116 50.9
Peaxi162Scf00003g02334 Petunia axillaris HOM05D006753 ORTHO05D008521 2.6e-19 99.0 105 56.2
Lj6g0020021 Lotus japonicus HOM05D006753 ORTHO05D008521 3.4e-19 98.6 115 50.4
arahy.Tifrunner.gnm1.ann1.IW7U68 Arachis hypogaea HOM05D006753 ORTHO05D008521 7.7e-19 97.4 60 76.7
arahy.Tifrunner.gnm1.ann1.RGG8YR Arachis hypogaea HOM05D006753 ORTHO05D008521 7.7e-19 97.4 60 76.7
AL5G33000 Arabidopsis lyrata HOM05D006753 ORTHO05D008521 2.2e-18 95.9 117 48.7
Carub.0005s1869 Capsella rubella HOM05D006753 ORTHO05D008521 5.0e-18 94.7 115 48.7
PSO782G2482 Papaver somniferum HOM05D006753 ORTHO05D008521 1.1e-17 93.6 115 47.0
Prupe.1G351400 Prunus persica HOM05D006753 ORTHO05D008521 5.5e-17 91.3 115 48.7
PSO063G2822 Papaver somniferum HOM05D006753 ORTHO05D008521 7.2e-17 90.9 115 46.1
Cc11_g04160 Coffea canephora HOM05D006753 ORTHO05D008521 1.6e-16 89.7 61 73.8
BraA09t41301Z Brassica rapa HOM05D006753 ORTHO05D008521 4.6e-16 88.2 111 47.7
AT5G08535 Arabidopsis thaliana HOM05D006753 ORTHO05D008521 6.1e-16 87.8 110 48.2
HanXRQChr14g0446421 Helianthus annuus HOM05D006753 ORTHO05D008521 1.0e-15 87.0 55 80.0
BcaC07g41240 Brassica carinata HOM05D006753 ORTHO05D008521 5.1e-15 84.7 121 46.3
A10p28190 Brassica napus HOM05D006753 ORTHO05D008521 5.1e-15 84.7 119 45.4
C08p42460 Brassica napus HOM05D006753 ORTHO05D008521 5.1e-15 84.7 121 46.3
BolC8t51807H Brassica oleracea HOM05D006753 ORTHO05D008521 5.1e-15 84.7 121 46.3
BraA10t44868Z Brassica rapa HOM05D006753 ORTHO05D008521 5.1e-15 84.7 119 45.4
AL6G19240 Arabidopsis lyrata HOM05D006753 ORTHO05D008521 6.7e-15 84.3 109 49.5
A09p59170 Brassica napus HOM05D006753 ORTHO05D008521 8.8e-15 84.0 111 45.9
Eucgr.J00331 Eucalyptus grandis HOM05D006753 ORTHO05D008521 1.1e-14 83.6 166 36.7
BolC9t59587H Brassica oleracea HOM05D006753 ORTHO05D008521 3.3e-14 82.0 119 44.5
Mapoly0001s0293 Marchantia polymorpha HOM05D006753 ORTHO05D008521 5.7e-14 81.3 115 43.5
HPP92_003487 Vanilla planifolia HOM05D006753 ORTHO05D008521 7.4e-14 80.9 117 47.0
HPP92_026885 Vanilla planifolia HOM05D006753 ORTHO05D008521 7.4e-14 80.9 117 47.0
C09p68400 Brassica napus HOM05D006753 ORTHO05D008521 9.7e-14 80.5 119 43.7
Carub.0006s0749 Capsella rubella HOM05D006753 ORTHO05D008521 1.3e-13 80.1 117 45.3
BcaB08g34880 Brassica carinata HOM05D006753 ORTHO05D008521 1.7e-13 79.7 121 43.0
Aa31LG3G18000 Aethionema arabicum HOM05D006753 ORTHO05D008521 4.8e-13 78.2 118 44.9
SMO166G0033 Selaginella moellendorffii HOM05D006753 ORTHO05D008521 6.3e-13 77.8 105 43.8
Nitab4.5_0002355g0040 Nicotiana tabacum HOM05D006753 ORTHO05D008521 4.1e-12 75.1 124 46.0
SMO115G0110 Selaginella moellendorffii HOM05D000422 ORTHO05D002369 6.9e-12 74.3 103 42.7
SHI21226 Sapria himalayana HOM05D000843 ORTHO05D000698 1.5e-11 73.2 56 64.3
BcaB08g37248 Brassica carinata HOM05D006753 ORTHO05D008521 2.0e-11 72.8 107 45.8
Thhalv10015604m.g Eutrema salsugineum HOM05D006753 ORTHO05D008521 3.4e-11 72.0 84 51.2
Haze_17401 Corylus avellana HOM05D006753 ORTHO05D008521 1.1e-06 57.0 38 68.4
Cre02.g085200 Chlamydomonas reinhardtii HOM05D006753 ORTHO05D008521 1.5e-06 56.6 48 47.9
EL10Ac4g09561 Beta vulgaris HOM05D005826 ORTHO05D004357 3.3e-06 55.5 114 36.0
DCAR_006590 Daucus carota HOM05D005826 ORTHO05D004357 4.4e-06 55.1 116 36.2
Pp3c21_14790 Physcomitrium patens HOM05D006823 ORTHO05D008608 4.4e-06 55.1 108 32.4
THA.LOC104821749 Tarenaya hassleriana HOM05D005826 ORTHO05D004357 4.4e-06 55.1 114 36.8
TWI12G0016 Tripterygium wilfordii HOM05D005826 ORTHO05D004357 4.4e-06 55.1 114 36.8
COL.COLO4_21663 Corchorus olitorius HOM05D006753 ORTHO05D008521 5.7e-06 54.7 86 46.5
Sc09g0002410 Simmondsia chinensis HOM05D005826 ORTHO05D004357 5.7e-06 54.7 114 36.8
AagrBONN_evm.TU.Sc2ySwM_228.1188 Anthoceros agrestis HOM05D006753 ORTHO05D008521 7.4e-06 54.3 118 33.1
Cpa.g.sc48.51 Carica papaya HOM05D005826 ORTHO05D004357 9.7e-06 53.9 116 36.2
Solyc01g101250.3 Solanum lycopersicum HOM05D005826 ORTHO05D004357 9.7e-06 53.9 116 37.1
Sopen01g044700 Solanum pennellii HOM05D005826 ORTHO05D004357 9.7e-06 53.9 116 37.1
SGA_v2.0_scaffold22G09707 Striga asiatica HOM05D005826 ORTHO05D004357 9.7e-06 53.9 114 34.2
vmacro19681 Vaccinium macrocarpon HOM05D006753 ORTHO05D008521 9.7e-06 53.9 32 75.0
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 9.7e-06 53.9 107 35.5


User provided reference genes

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