Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62032256 Chenopodium quinoa HOM05D006249 ORTHO05D007643 3.7e-160 568.2 284 100.0
AUR62011941 Chenopodium quinoa HOM05D006249 ORTHO05D007643 1.4e-148 529.6 314 86.6
Ah.02g111470 Amaranthus hybridus HOM05D006249 ORTHO05D007643 3.8e-117 425.2 265 78.9
Hund09572 Selenicereus undatus HOM05D006249 ORTHO05D007643 5.9e-102 374.8 288 67.7
Thecc.01G267400 Theobroma cacao HOM05D006249 ORTHO05D007643 1.9e-92 343.2 307 59.6
Manes.05G084500 Manihot esculenta HOM05D006249 ORTHO05D007643 1.6e-91 340.1 312 59.9
COL.COLO4_06075 Corchorus olitorius HOM05D006249 ORTHO05D007643 4.0e-90 335.5 312 58.0
Sc17g0000990 Simmondsia chinensis HOM05D006249 ORTHO05D007643 3.4e-89 332.4 259 66.0
GSVIVG01000723001 Vitis vinifera HOM05D006249 ORTHO05D007643 9.8e-89 330.9 311 57.2
Dinv34569 Davidia involucrata HOM05D006249 ORTHO05D007643 2.9e-88 329.3 309 58.3
Sopen09g027650 Solanum pennellii HOM05D006249 ORTHO05D007643 3.7e-88 328.9 312 57.1
Ciclev10021257m.g Citrus clementina HOM05D006249 ORTHO05D007643 6.4e-88 328.2 314 58.0
Gohir.D11G132800 Gossypium hirsutum HOM05D006249 ORTHO05D007643 6.4e-88 328.2 313 58.1
Solyc09g065860.3 Solanum lycopersicum HOM05D006249 ORTHO05D007643 1.1e-87 327.4 312 56.7
Gorai.007G142000 Gossypium raimondii HOM05D006249 ORTHO05D007643 1.9e-87 326.6 313 58.1
CiPaw.03G257400 Carya illinoinensis HOM05D006249 ORTHO05D007643 2.4e-87 326.2 311 56.3
Gohir.A11G127400 Gossypium hirsutum HOM05D006249 ORTHO05D007643 3.2e-87 325.9 315 58.7
Peaxi162Scf00049g00209 Petunia axillaris HOM05D006249 ORTHO05D007643 4.1e-87 325.5 280 59.3
Potri.005G218700 Populus trichocarpa HOM05D006249 ORTHO05D007643 5.4e-87 325.1 311 57.6
CSS0046504 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 7.8e-86 321.2 317 57.4
ECA248G0032 Erigeron canadensis HOM05D006249 ORTHO05D007643 3.0e-85 319.3 312 53.2
Cpa.g.sc52.92 Carica papaya HOM05D006249 ORTHO05D007643 5.0e-85 318.5 313 54.3
Lj2C1159G1 Lonicera japonica HOM05D006249 ORTHO05D007643 6.6e-85 318.2 313 55.3
ClCG01G001850 Citrullus lanatus HOM05D006249 ORTHO05D007643 1.9e-84 316.6 245 64.5
Duzib138G0419 Durio zibethinus HOM05D006249 ORTHO05D007643 1.9e-84 316.6 266 61.7
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 4.3e-84 315.5 300 58.3
HanXRQChr01g0006841 Helianthus annuus HOM05D006249 ORTHO05D007643 5.6e-84 315.1 313 54.3
Atru.chr5.1566 Acer truncatum HOM05D006249 ORTHO05D007643 9.5e-84 314.3 231 69.3
Atru.chr5.1568 Acer truncatum HOM05D006249 ORTHO05D007643 9.5e-84 314.3 231 69.3
Nitab4.5_0001556g0120 Nicotiana tabacum HOM05D006249 ORTHO05D007643 9.5e-84 314.3 287 57.1
RcHm_v2.0_Chr6g0289561 Rosa chinensis HOM05D006249 ORTHO05D007643 9.5e-84 314.3 312 56.7
CsaV3_5G002000 Cucumis sativus L. HOM05D006249 ORTHO05D007643 1.2e-83 313.9 247 63.6
QL12p042687 Quercus lobata HOM05D006249 ORTHO05D007643 1.2e-83 313.9 311 55.3
Rhsim01G0269700 Rhododendron simsii HOM05D006249 ORTHO05D007643 1.2e-83 313.9 323 53.3
Haze_24532 Corylus avellana HOM05D006249 ORTHO05D007643 2.1e-83 313.2 312 55.1
FvH4_2g22511 Fragaria vesca HOM05D006249 ORTHO05D007643 2.8e-83 312.8 311 55.3
CAN.G1259.4 Capsicum annuum HOM05D006249 ORTHO05D007643 6.2e-83 311.6 312 54.8
PGSC0003DMG400019301 Solanum tuberosum HOM05D006249 ORTHO05D007643 8.1e-83 311.2 291 57.7
MELO3C005753.2 Cucumis melo HOM05D006249 ORTHO05D007643 1.1e-82 310.8 247 63.6
Prupe.8G232100 Prunus persica HOM05D006249 ORTHO05D007643 1.1e-82 310.8 313 54.3
Nn1g02571 Nelumbo nucifera HOM05D006249 ORTHO05D007643 1.4e-82 310.5 305 55.7
TAR362G0606 Trochodendron aralioides HOM05D006249 ORTHO05D007643 1.4e-82 310.5 312 56.4
C05p01650 Brassica napus HOM05D006249 ORTHO05D007643 2.3e-82 309.7 320 52.5
Eucgr.K03312 Eucalyptus grandis HOM05D006249 ORTHO05D007643 2.3e-82 309.7 256 62.1
CARHR002370 Cardamine hirsuta HOM05D006249 ORTHO05D007643 2.6e-81 306.2 313 54.0
Lsat_1_v5_gn_5_186740 Lactuca sativa HOM05D006249 ORTHO05D007643 4.4e-81 305.4 310 52.6
TPR.G5717 Trifolium pratense HOM05D006249 ORTHO05D007643 4.4e-81 305.4 269 56.5
BcaC07g42289 Brassica carinata HOM05D006249 ORTHO05D007643 5.8e-81 305.1 310 53.2
BolC5t28944H Brassica oleracea HOM05D006249 ORTHO05D007643 5.8e-81 305.1 310 53.2
AT1G03030 Arabidopsis thaliana HOM05D006249 ORTHO05D007643 7.5e-81 304.7 246 62.2
A10p01650 Brassica napus HOM05D006249 ORTHO05D007643 3.7e-80 302.4 310 53.2
MBI04_g06851_MAGBIO Magnolia biondii HOM05D006249 ORTHO05D007643 3.7e-80 302.4 318 51.3
Migut.D00374 Erythranthe guttata HOM05D006249 ORTHO05D007643 4.9e-80 302.0 313 53.7
Glyma.19G161200 Glycine max HOM05D006249 ORTHO05D007643 4.9e-80 302.0 277 57.0
Psat3g061040 Pisum sativum HOM05D006249 ORTHO05D007643 4.9e-80 302.0 309 50.5
CANSAT01G0091 Cannabis sativa HOM05D006249 ORTHO05D007643 6.4e-80 301.6 311 51.4
vmacro14872 Vaccinium macrocarpon HOM05D006249 ORTHO05D007643 6.4e-80 301.6 251 60.6
Medtr7g096100 Medicago truncatula HOM05D006249 ORTHO05D007643 8.3e-80 301.2 250 58.4
BraA10t42442Z Brassica rapa HOM05D006249 ORTHO05D007643 1.1e-79 300.8 310 52.9
SalBow4G2323 Salvia bowleyana HOM05D006249 ORTHO05D007643 1.4e-79 300.4 263 60.1
Aa31LG1G9510 Aethionema arabicum HOM05D006249 ORTHO05D007643 1.9e-79 300.1 314 52.5
MD05G1205700 Malus domestica HOM05D006249 ORTHO05D007643 3.2e-79 299.3 312 53.2
Lj1g0022179 Lotus japonicus HOM05D006249 ORTHO05D007643 4.1e-79 298.9 314 51.0
Aqoxy2G03531 Aquilegia oxysepala HOM05D006249 ORTHO05D007643 5.4e-79 298.5 299 53.5
Carub.0001s0216 Capsella rubella HOM05D006249 ORTHO05D007643 5.4e-79 298.5 246 60.6
CSS0032391 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 7.1e-79 298.1 300 56.7
THA.LOC104801257 Tarenaya hassleriana HOM05D006249 ORTHO05D007643 1.2e-78 297.4 255 58.4
Thhalv10008317m.g Eutrema salsugineum HOM05D006249 ORTHO05D007643 3.5e-78 295.8 311 51.8
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 1.0e-77 294.3 259 60.2
Oeu018173.1 Olea europaea HOM05D006249 ORTHO05D007643 1.7e-77 293.5 303 53.8
Cc01_g18850 Coffea canephora HOM05D006249 ORTHO05D007643 2.3e-77 293.1 309 51.5
PGR044G2488 Punica granatum HOM05D006249 ORTHO05D007643 3.0e-77 292.7 270 57.0
AL1G12480 Arabidopsis lyrata HOM05D006249 ORTHO05D007643 1.5e-76 290.4 230 63.9
Nitab4.5_0000187g0200 Nicotiana tabacum HOM05D006249 ORTHO05D007643 1.9e-76 290.0 231 62.3
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 2.8e-75 286.2 250 58.0
arahy.Tifrunner.gnm1.ann1.EN4NAA Arachis hypogaea HOM05D006249 ORTHO05D007643 6.2e-75 285.0 269 55.4
ATR0665G572 Amborella trichopoda HOM05D006249 ORTHO05D007643 8.1e-75 284.6 248 59.7
TWI18G0435 Tripterygium wilfordii HOM05D006249 ORTHO05D007643 8.1e-75 284.6 265 58.1
arahy.Tifrunner.gnm1.ann1.3ZGG11 Arachis hypogaea HOM05D006249 ORTHO05D007643 4.0e-74 282.3 269 54.6
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 4.0e-74 282.3 254 58.3
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 4.0e-74 282.3 254 58.3
Lalb_Chr25g0290111 Lupinus albus HOM05D006249 ORTHO05D007643 4.4e-73 278.9 249 56.2
MSTRG.21512 Avicennia marina HOM05D006249 ORTHO05D007643 5.8e-73 278.5 247 59.1
CDE06G0138 Ceratophyllum demersum HOM05D006249 ORTHO05D007643 2.4e-71 273.1 277 52.0
HPP92_012490 Vanilla planifolia HOM05D006249 ORTHO05D007643 6.6e-69 265.0 257 52.1
PSO832G1981 Papaver somniferum HOM05D006249 ORTHO05D007643 8.6e-69 264.6 318 49.7
Sed0010412 Sechium edule HOM05D006249 ORTHO05D007643 1.1e-68 264.2 227 59.9
Os12g0601200 Oryza sativa ssp. japonica HOM05D006249 ORTHO05D007643 1.5e-68 263.8 243 56.0
PSO210G4763 Papaver somniferum HOM05D006249 ORTHO05D007643 2.5e-68 263.1 321 48.9
BcaC07g42286 Brassica carinata HOM05D006249 ORTHO05D007643 2.8e-67 259.6 288 50.3
Zm00001eb135540 Zea mays HOM05D006249 ORTHO05D007643 6.8e-66 255.0 250 53.2
Mapoly0096s0074 Marchantia polymorpha HOM05D006249 ORTHO05D007643 1.5e-57 227.3 251 47.8
EL10Ac5g10475 Beta vulgaris HOM05D006249 ORTHO05D007643 1.7e-56 223.8 151 73.5
Pp3c17_16800 Physcomitrium patens HOM05D006249 ORTHO05D007643 7.1e-55 218.4 244 46.7
Phvul.001G156700 Phaseolus vulgaris HOM05D006249 ORTHO05D007643 1.6e-54 217.2 195 56.9
unitig_0.g1129 Utricularia gibba HOM05D006249 ORTHO05D007643 7.4e-52 208.4 181 58.0
Medtr4g076080 Medicago truncatula HOM05D006249 ORTHO05D007643 6.9e-50 201.8 266 43.6
BcaC07g42292 Brassica carinata HOM05D006249 ORTHO05D007643 9.9e-49 198.0 336 40.2
AagrBONN_evm.TU.Sc2ySwM_228.3891 Anthoceros agrestis HOM05D006249 ORTHO05D007643 3.5e-46 189.5 292 40.8
SEGI_12640 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 6.7e-45 185.3 175 49.7
Actinidia21156 Actinidia chinensis HOM05D006249 ORTHO05D007643 1.3e-40 171.0 249 43.8
RcHm_v2.0_Chr4g0397901 Rosa chinensis HOM05D006249 ORTHO05D007643 1.3e-40 171.0 176 53.4
SMO358G0282 Selaginella moellendorffii HOM05D000331 ORTHO05D002018 2.5e-36 156.8 173 46.2
Oeu018171.1 Olea europaea HOM05D006249 ORTHO05D007643 3.7e-35 152.9 170 52.4
Ca_15970_v3 Cicer arietinum L. HOM05D006249 ORTHO05D007643 6.3e-35 152.1 169 46.2
Sp1g02020 Schrenkiella parvula HOM05D006249 ORTHO05D007643 1.8e-34 150.6 169 47.9
Hund30725 Selenicereus undatus HOM05D006249 ORTHO05D007643 2.5e-31 140.2 89 74.2
MCO14G208 Micromonas commoda HOM05D006249 ORTHO05D007643 1.2e-30 137.9 245 35.9
Cre02.g101000 Chlamydomonas reinhardtii HOM05D006249 ORTHO05D007643 1.6e-30 137.5 273 34.1
arahy.Tifrunner.gnm1.ann1.U7WVQR Arachis hypogaea HOM05D006249 ORTHO05D007643 6.1e-30 135.6 219 37.4
Hund30696 Selenicereus undatus HOM05D006249 ORTHO05D007643 3.0e-29 133.3 89 70.8
Medtr8g064430 Medicago truncatula HOM05D006249 ORTHO05D007643 3.4e-25 119.8 91 62.6
arahy.Tifrunner.gnm1.ann1.FBQK8B Arachis hypogaea HOM05D006249 ORTHO05D007643 1.3e-24 117.9 100 57.0
arahy.Tifrunner.gnm1.ann1.AHQ53Z Arachis hypogaea HOM05D006249 ORTHO05D007643 2.2e-24 117.1 100 56.0
Glyma.03G158766 Glycine max HOM05D006249 ORTHO05D007643 8.5e-24 115.2 93 62.4
CBR_g19145 Chara braunii HOM05D006249 ORTHO05D007643 7.9e-22 108.6 167 42.5
Glyma.03G158832 Glycine max HOM05D006249 ORTHO05D007643 1.0e-21 108.2 68 75.0
SHI29847 Sapria himalayana HOM05D006249 ORTHO05D007643 5.3e-18 95.9 115 43.5
PRCOL_00003971 Prasinoderma coloniale HOM05D006249 ORTHO05D007643 2.6e-17 93.6 173 31.8
SHI34902 Sapria himalayana HOM05D006249 ORTHO05D007643 5.9e-17 92.4 128 43.0
SHI29011 Sapria himalayana HOM05D006249 ORTHO05D007643 6.5e-16 89.0 181 33.1
SHI36882 Sapria himalayana HOM05D006249 ORTHO05D007643 2.0e-12 77.4 86 48.8
CSS0005124 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 9.7e-12 75.1 58 65.5
Cfa022768 Carpinus fangiana HOM05D006249 ORTHO05D007643 1.7e-11 74.3 99 36.4
SHI04506 Sapria himalayana HOM05D006249 ORTHO05D007643 1.8e-10 70.9 94 41.5
SHI16544 Sapria himalayana HOM05D006249 ORTHO05D007643 5.9e-09 65.9 116 37.1
SEGI_29111 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 5.5e-07 59.3 39 71.8
SHI36883 Sapria himalayana HOM05D006249 ORTHO05D007643 6.1e-06 55.8 57 45.6


User provided reference genes

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