Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62032098 Chenopodium quinoa HOM05D005389 ORTHO05D008484 0.0e+00 1891.7 939 100.0
AUR62037862 Chenopodium quinoa HOM05D005389 ORTHO05D008484 0.0e+00 1581.6 903 89.4
Ah.16g106960 Amaranthus hybridus HOM05D005389 ORTHO05D008484 0.0e+00 1379.8 952 75.0
Sc06g0002580 Simmondsia chinensis HOM05D005389 ORTHO05D008484 0.0e+00 1253.8 907 71.6
Cfa007465 Carpinus fangiana HOM05D005389 ORTHO05D008484 0.0e+00 1229.2 952 67.0
Hund19981 Selenicereus undatus HOM05D005389 ORTHO05D008484 0.0e+00 1226.1 940 67.8
Thecc.04G003900 Theobroma cacao HOM05D005389 ORTHO05D008484 0.0e+00 1224.2 953 66.3
CiPaw.03G035000 Carya illinoinensis HOM05D005389 ORTHO05D008484 0.0e+00 1214.9 952 65.8
Haze_14630 Corylus avellana HOM05D005389 ORTHO05D008484 0.0e+00 1213.4 989 64.1
GSVIVG01032529001 Vitis vinifera HOM05D005389 ORTHO05D008484 0.0e+00 1206.8 953 65.6
QL02p077913 Quercus lobata HOM05D005389 ORTHO05D008484 0.0e+00 1205.7 952 65.7
Gohir.D07G225200 Gossypium hirsutum HOM05D005389 ORTHO05D008484 0.0e+00 1196.8 952 65.0
Gorai.001G259600 Gossypium raimondii HOM05D005389 ORTHO05D008484 0.0e+00 1194.9 952 65.0
Gohir.A07G218100 Gossypium hirsutum HOM05D005389 ORTHO05D008484 0.0e+00 1193.7 952 65.2
Hma1.2p1_0697F.1_g204985 Hydrangea macrophylla HOM05D005389 ORTHO05D008484 0.0e+00 1191.8 953 64.6
COL.COLO4_06141 Corchorus olitorius HOM05D005389 ORTHO05D008484 0.0e+00 1190.3 971 65.0
TAR374G1603 Trochodendron aralioides HOM05D005389 ORTHO05D008484 0.0e+00 1188.3 951 66.1
Glyma.01G077400 Glycine max HOM05D005389 ORTHO05D008484 0.0e+00 1182.2 963 63.6
Lj1g0011358 Lotus japonicus HOM05D005389 ORTHO05D008484 0.0e+00 1181.8 955 64.4
MD17G1039500 Malus domestica HOM05D005389 ORTHO05D008484 0.0e+00 1178.7 947 65.4
Phvul.008G153100 Phaseolus vulgaris HOM05D005389 ORTHO05D008484 0.0e+00 1177.9 941 64.5
vmacro05794 Vaccinium macrocarpon HOM05D005389 ORTHO05D008484 0.0e+00 1177.5 953 65.5
Ca_19612_v3 Cicer arietinum L. HOM05D005389 ORTHO05D008484 0.0e+00 1176.4 938 65.1
Prupe.3G279400 Prunus persica HOM05D005389 ORTHO05D008484 0.0e+00 1175.6 946 65.0
PGR142G1957 Punica granatum HOM05D005389 ORTHO05D008484 0.0e+00 1175.2 933 65.4
arahy.Tifrunner.gnm1.ann1.D3X87A Arachis hypogaea HOM05D005389 ORTHO05D008484 0.0e+00 1174.8 953 64.1
Ciclev10010988m.g Citrus clementina HOM05D005389 ORTHO05D008484 0.0e+00 1173.7 935 65.5
MD09G1038400 Malus domestica HOM05D005389 ORTHO05D008484 0.0e+00 1170.6 944 65.3
Potri.001G350700 Populus trichocarpa HOM05D005389 ORTHO05D008484 0.0e+00 1170.6 954 64.9
arahy.Tifrunner.gnm1.ann1.T59QJ9 Arachis hypogaea HOM05D005389 ORTHO05D008484 0.0e+00 1169.8 953 63.8
RcHm_v2.0_Chr2g0170441 Rosa chinensis HOM05D005389 ORTHO05D008484 0.0e+00 1168.7 948 65.0
Medtr7g030060 Medicago truncatula HOM05D005389 ORTHO05D008484 0.0e+00 1167.9 957 64.2
Medtr7g038700 Medicago truncatula HOM05D005389 ORTHO05D008484 0.0e+00 1167.9 957 64.2
Lju41A31T33 Lonicera japonica HOM05D005389 ORTHO05D008484 0.0e+00 1161.7 908 66.7
Eucgr.I01836 Eucalyptus grandis HOM05D005389 ORTHO05D008484 0.0e+00 1160.6 951 64.0
Sabra16G0230200 Salix brachista HOM05D005389 ORTHO05D008484 0.0e+00 1157.5 955 64.4
TWI36G1051 Tripterygium wilfordii HOM05D005389 ORTHO05D008484 0.0e+00 1157.1 955 63.7
FvH4_6g50180 Fragaria vesca HOM05D005389 ORTHO05D008484 0.0e+00 1156.4 955 63.8
CSS0036605 Camellia sinensis var. sinensis HOM05D005389 ORTHO05D008484 0.0e+00 1156.0 925 65.9
Lsat_1_v5_gn_4_181101 Lactuca sativa HOM05D005389 ORTHO05D008484 0.0e+00 1156.0 942 63.8
Psat3g165760 Pisum sativum HOM05D005389 ORTHO05D008484 0.0e+00 1152.1 956 63.5
Lalb_Chr21g0316351 Lupinus albus HOM05D005389 ORTHO05D008484 0.0e+00 1150.6 947 64.0
THA.LOC104821073 Tarenaya hassleriana HOM05D005389 ORTHO05D008484 0.0e+00 1145.6 954 62.3
Thhalv10022528m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 0.0e+00 1140.2 954 62.5
Carub.0003s0071 Capsella rubella HOM05D005389 ORTHO05D008484 0.0e+00 1136.3 959 62.1
MBI14_g02685_MAGBIO Magnolia biondii HOM05D005389 ORTHO05D008484 0.0e+00 1135.2 963 62.6
AT3G01380 Arabidopsis thaliana HOM05D005389 ORTHO05D008484 0.0e+00 1134.8 954 62.1
HanXRQChr09g0265861 Helianthus annuus HOM05D005389 ORTHO05D008484 0.0e+00 1134.8 956 62.0
Cc07_g02570 Coffea canephora HOM05D005389 ORTHO05D008484 0.0e+00 1133.6 950 62.6
DCAR_013961 Daucus carota HOM05D005389 ORTHO05D008484 0.0e+00 1126.7 933 63.8
Sopen02g031910 Solanum pennellii HOM05D005389 ORTHO05D008484 0.0e+00 1124.8 937 62.5
Solyc02g087170.4 Solanum lycopersicum HOM05D005389 ORTHO05D008484 0.0e+00 1124.4 937 62.2
BcaC05g30466 Brassica carinata HOM05D005389 ORTHO05D008484 0.0e+00 1123.6 961 61.3
C09p75190 Brassica napus HOM05D005389 ORTHO05D008484 0.0e+00 1123.2 957 61.5
Sp3g00690 Schrenkiella parvula HOM05D005389 ORTHO05D008484 0.0e+00 1122.8 956 61.8
BolC5t35145H Brassica oleracea HOM05D005389 ORTHO05D008484 0.0e+00 1121.7 957 61.5
BraA05t23196Z Brassica rapa HOM05D005389 ORTHO05D008484 0.0e+00 1120.5 956 61.5
A05p44600 Brassica napus HOM05D005389 ORTHO05D008484 0.0e+00 1120.1 956 61.5
CAN.G206.54 Capsicum annuum HOM05D005389 ORTHO05D008484 0.0e+00 1120.1 937 62.6
Nitab4.5_0005206g0050 Nicotiana tabacum HOM05D005389 ORTHO05D008484 0.0e+00 1120.1 942 61.6
PGSC0003DMG400000509 Solanum tuberosum HOM05D005389 ORTHO05D008484 0.0e+00 1117.8 937 61.6
SGA_v2.0_scaffold135G34838 Striga asiatica HOM05D005389 ORTHO05D008484 0.0e+00 1110.5 953 61.5
PSO161G0132 Papaver somniferum HOM05D005389 ORTHO05D008484 0.0e+00 1110.1 952 61.9
AL3G10820 Arabidopsis lyrata HOM05D005389 ORTHO05D008484 0.0e+00 1109.4 999 59.4
PSO478G0736 Papaver somniferum HOM05D005389 ORTHO05D008484 0.0e+00 1107.0 952 61.9
Migut.H00153 Erythranthe guttata HOM05D005389 ORTHO05D008484 0.0e+00 1106.7 954 61.1
SalBow1G5751 Salvia bowleyana HOM05D005389 ORTHO05D008484 0.0e+00 1104.4 952 60.4
Aqoxy3G00899 Aquilegia oxysepala HOM05D005389 ORTHO05D008484 0.0e+00 1104.0 926 62.9
Aa31LG5G10500 Aethionema arabicum HOM05D005389 ORTHO05D008484 0.0e+00 1090.5 998 59.4
Manes.17G118300 Manihot esculenta HOM05D005389 ORTHO05D008484 0.0e+00 1086.2 877 65.2
FAN05G2940 Fragaria x ananassa HOM05D005389 ORTHO05D008484 0.0e+00 1080.1 950 60.6
ECA232G1242 Erigeron canadensis HOM05D005389 ORTHO05D008484 1.3e-311 1072.8 956 60.4
FAN14G3523 Fragaria x ananassa HOM05D005389 ORTHO05D008484 2.2e-310 1068.9 966 59.5
ATR0800G105 Amborella trichopoda HOM05D005389 ORTHO05D008484 7.3e-298 1027.3 927 58.3
Rhsim10G0027600 Rhododendron simsii HOM05D005389 ORTHO05D008484 9.5e-298 1026.9 901 61.3
FAN02G4477 Fragaria x ananassa HOM05D005389 ORTHO05D008484 5.8e-295 1017.7 950 58.2
FAN09G2300 Fragaria x ananassa HOM05D005389 ORTHO05D008484 4.9e-294 1014.6 950 58.2
Duzib264G0565 Durio zibethinus HOM05D005389 ORTHO05D008484 2.2e-286 989.2 953 56.7
Nitab4.5_0001952g0170 Nicotiana tabacum HOM05D005389 ORTHO05D008484 2.7e-284 982.2 868 58.5
Zm00001eb245310 Zea mays HOM05D005389 ORTHO05D008484 4.6e-284 981.5 890 58.7
VMungo1383G0108 Vigna mungo HOM05D005389 ORTHO05D008484 1.9e-282 976.1 714 66.4
Prupe.2G019300 Prunus persica HOM05D005389 ORTHO05D008484 6.2e-281 971.1 951 57.5
C07p01310 Brassica napus HOM05D005389 ORTHO05D008484 9.6e-266 920.6 770 61.0
Mapoly0007s0201 Marchantia polymorpha HOM05D005389 ORTHO05D008484 4.8e-249 865.1 906 50.4
Pp3c17_22750 Physcomitrium patens HOM05D005389 ORTHO05D008484 3.3e-242 842.4 916 48.8
Nn4g22901 Nelumbo nucifera HOM05D005389 ORTHO05D008484 2.5e-234 816.2 766 59.9
SMO244G0055 Selaginella moellendorffii HOM05D005389 ORTHO05D008484 2.0e-231 806.6 907 47.7
TPR.G39126 Trifolium pratense HOM05D005389 ORTHO05D008484 2.2e-230 803.1 715 58.9
Os02g0581000 Oryza sativa ssp. japonica HOM05D005389 ORTHO05D008484 9.7e-226 787.7 579 66.7
AagrBONN_evm.TU.Sc2ySwM_368.926 Anthoceros agrestis HOM05D005389 ORTHO05D008484 1.9e-221 773.5 929 47.1
Cpa.g.sc14.89 Carica papaya HOM05D005389 ORTHO05D008484 2.2e-217 760.0 610 63.3
Dinv35027 Davidia involucrata HOM05D005389 ORTHO05D008484 1.1e-200 704.5 702 55.3
Actinidia36063 Actinidia chinensis HOM05D005389 ORTHO05D008484 7.7e-199 698.4 651 59.3
CDE04G3020 Ceratophyllum demersum HOM05D005389 ORTHO05D008484 6.1e-196 688.7 909 44.7
HPP92_017062 Vanilla planifolia HOM05D005389 ORTHO05D008484 2.3e-195 686.8 489 67.7
Atru.chr8.2421 Acer truncatum HOM05D005389 ORTHO05D008484 3.3e-189 666.4 397 80.1
CARHR075600 Cardamine hirsuta HOM05D005389 ORTHO05D008484 1.6e-183 647.5 656 55.3
Peaxi162Scf00129g00824 Petunia axillaris HOM05D005389 ORTHO05D008484 8.1e-172 608.6 741 47.0
unitig_21.g20503 Utricularia gibba HOM05D005389 ORTHO05D008484 1.1e-168 598.2 671 51.0
Thhalv10021056m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 1.6e-151 541.2 342 75.1
Thhalv10020372m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 1.0e-142 511.9 528 55.3
BcaNung07363 Brassica carinata HOM05D005389 ORTHO05D008484 1.8e-142 511.1 576 51.7
Cfa024795 Carpinus fangiana HOM05D005389 ORTHO05D008484 1.9e-141 507.7 994 35.7
RcHm_v2.0_Chr7g0219571 Rosa chinensis HOM05D005389 ORTHO05D008484 4.0e-139 500.0 405 62.2
CARHR075590 Cardamine hirsuta HOM05D005389 ORTHO05D008484 1.7e-137 494.6 300 77.0
MCO14G282 Micromonas commoda HOM05D005389 ORTHO05D008484 2.4e-123 447.6 912 33.8
SEGI_37358 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 3.5e-98 364.0 306 57.8
SEGI_27782 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 6.8e-86 323.2 421 48.0
Hma1.2p1_1975F.1_g309760 Hydrangea macrophylla HOM05D005389 ORTHO05D008484 9.5e-80 302.8 223 68.2
unitig_21.g20502 Utricularia gibba HOM05D005389 ORTHO05D008484 4.4e-53 214.2 108 88.0
RcHm_v2.0_Chr7g0219581 Rosa chinensis HOM05D005389 ORTHO05D008484 7.6e-53 213.4 213 54.9
RcHm_v2.0_Chr7g0219561 Rosa chinensis HOM05D005389 ORTHO05D008484 1.1e-43 183.0 242 50.8
Gorai.010G191700 Gossypium raimondii HOM05D005389 ORTHO05D017049 3.2e-35 154.8 111 70.3
Peaxi162Scf00129g00823 Petunia axillaris HOM05D005389 ORTHO05D008484 2.8e-31 141.7 88 86.4
TPR.G17640 Trifolium pratense HOM05D005389 ORTHO05D008484 8.1e-31 140.2 100 79.0
Gohir.D11G253466 Gossypium hirsutum HOM05D005389 ORTHO05D017049 5.6e-24 117.5 67 82.1
Gorai.007G272300 Gossypium raimondii HOM05D005389 ORTHO05D017049 5.6e-24 117.5 67 82.1
Gohir.D01G103701 Gossypium hirsutum HOM05D005389 ORTHO05D017049 1.3e-23 116.3 67 82.1
Gohir.D07G069451 Gossypium hirsutum HOM05D005389 ORTHO05D017049 1.3e-23 116.3 67 82.1
Gohir.D07G180351 Gossypium hirsutum HOM05D005389 ORTHO05D017049 1.3e-23 116.3 67 82.1
Gorai.008G095000 Gossypium raimondii HOM05D005389 ORTHO05D017049 2.8e-23 115.2 67 80.6
TPR.G36209 Trifolium pratense HOM05D005389 ORTHO05D022799 3.7e-23 114.8 83 68.7
SEGI_22900 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 4.8e-23 114.4 67 77.6
Gohir.D01G051322 Gossypium hirsutum HOM05D005389 ORTHO05D017049 1.1e-22 113.2 67 80.6
Gorai.009G374100 Gossypium raimondii HOM05D005389 ORTHO05D017049 1.8e-22 112.5 67 80.6
Gohir.D11G223028 Gossypium hirsutum HOM05D005389 ORTHO05D017049 4.0e-22 111.3 67 77.6
AUR62029616 Chenopodium quinoa HOM05D000677 ORTHO05D000727 1.2e-21 109.8 62 82.3
AUR62042102 Chenopodium quinoa HOM05D002784 ORTHO05D003113 2.9e-20 105.1 64 76.6
Actinidia13460 Actinidia chinensis HOM05D001853 ORTHO05D001908 1.4e-19 102.8 70 70.0
AUR62007702 Chenopodium quinoa HOM05D000719 ORTHO05D000569 4.2e-19 101.3 62 74.2
Gohir.D06G037575 Gossypium hirsutum HOM05D005389 ORTHO05D022799 7.1e-19 100.5 79 65.8
Gorai.011G193500 Gossypium raimondii HOM05D005389 ORTHO05D022799 7.1e-19 100.5 79 65.8
HanXRQChr05g0163421 Helianthus annuus HOM05D005389 ORTHO05D022799 7.1e-19 100.5 83 61.4
AUR62042776 Chenopodium quinoa HOM05D009516 ORTHO05D010476 9.3e-19 100.1 62 75.8
AUR62041633 Chenopodium quinoa HOM05D009516 ORTHO05D024978 1.2e-18 99.8 62 75.8
Gohir.D05G349750 Gossypium hirsutum HOM05D005389 ORTHO05D022799 2.7e-18 98.6 85 62.4
AUR62007218 Chenopodium quinoa HOM05D000331 ORTHO05D000732 3.5e-18 98.2 61 73.8
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 7.9e-18 97.1 64 71.9
AUR62017335 Chenopodium quinoa HOM05D000866 ORTHO05D000673 7.9e-18 97.1 60 75.0
AUR62036703 Chenopodium quinoa HOM05D038909 ORTHO05D024978 8.7e-17 93.6 62 69.4
Gohir.D08G162051 Gossypium hirsutum HOM05D005389 ORTHO05D022799 3.3e-16 91.7 79 60.8
AUR62031269 Chenopodium quinoa HOM05D000025 ORTHO05D028771 9.6e-16 90.1 106 49.1
Actinidia13461 Actinidia chinensis HOM05D005389 ORTHO05D008484 3.8e-12 78.2 74 50.0
Gohir.D08G122632 Gossypium hirsutum HOM05D005389 ORTHO05D048184 1.9e-11 75.9 58 60.3
Gorai.001G214100 Gossypium raimondii HOM05D005389 ORTHO05D048184 3.2e-11 75.1 58 60.3
Gorai.010G120100 Gossypium raimondii HOM05D005389 ORTHO05D047357 9.3e-11 73.6 58 58.6
AUR62025956 Chenopodium quinoa HOM05D000121 ORTHO05D024978 1.8e-09 69.3 39 76.9
AUR62029249 Chenopodium quinoa HOM05D007916 ORTHO05D010074 1.5e-08 66.2 40 75.0
AUR62019645 Chenopodium quinoa HOM05D000034 ORTHO05D000037 1.9e-08 65.9 49 65.3
Gorai.007G302600 Gossypium raimondii HOM05D000602 ORTHO05D010708 1.9e-08 65.9 35 85.7
Gohir.D03G059266 Gossypium hirsutum HOM05D005389 ORTHO05D047261 2.5e-08 65.5 39 87.2
Gorai.003G063200 Gossypium raimondii HOM05D005389 ORTHO05D047261 2.5e-08 65.5 39 87.2
RcHm_v2.0_Chr2g0111321 Rosa chinensis HOM05D006593 ORTHO05D008512 2.5e-08 65.5 323 24.1
RcHm_v2.0_Chr7g0219531 Rosa chinensis HOM05D005389 ORTHO05D008484 6.3e-07 60.8 79 46.8


User provided reference genes

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