Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62032079 Chenopodium quinoa HOM05D003355 ORTHO05D006192 8.1e-183 643.7 335 100.0
AUR62034926 Chenopodium quinoa HOM05D003355 ORTHO05D006192 1.3e-132 476.9 251 100.0
AUR62036327 Chenopodium quinoa HOM05D003355 ORTHO05D006192 3.2e-131 472.2 251 99.2
AUR62026608 Chenopodium quinoa HOM05D003355 ORTHO05D006192 1.4e-123 446.8 251 94.8
EL10Ac2g03332 Beta vulgaris HOM05D003355 ORTHO05D006192 1.1e-120 437.2 251 90.0
EL10Ac3g07470 Beta vulgaris HOM05D003355 ORTHO05D006192 1.1e-118 430.6 258 87.6
Ah.04g164110 Amaranthus hybridus HOM05D003355 ORTHO05D006192 9.4e-115 417.5 251 84.5
Hund05007 Selenicereus undatus HOM05D003355 ORTHO05D006192 5.7e-112 408.3 251 84.5
Duzib170G1171 Durio zibethinus HOM05D003355 ORTHO05D006192 1.1e-107 394.0 279 74.2
Duzib150G0383 Durio zibethinus HOM05D003355 ORTHO05D006192 2.5e-107 392.9 251 80.1
EL10Ac1g02148 Beta vulgaris HOM05D003355 ORTHO05D006192 2.7e-106 389.4 251 82.9
CSS0050028 Camellia sinensis var. sinensis HOM05D003355 ORTHO05D006192 3.6e-106 389.0 251 79.3
TAR629G1053 Trochodendron aralioides HOM05D003355 ORTHO05D006192 4.7e-106 388.7 251 78.1
Nn8g39637 Nelumbo nucifera HOM05D003355 ORTHO05D006192 8.0e-106 387.9 251 79.3
CANSAT78G0728 Cannabis sativa HOM05D003355 ORTHO05D006192 1.0e-105 387.5 251 78.9
Sc06g0001940 Simmondsia chinensis HOM05D003355 ORTHO05D006192 2.3e-105 386.3 251 80.9
Gohir.D02G102800 Gossypium hirsutum HOM05D003355 ORTHO05D006192 4.0e-105 385.6 251 78.5
Manes.06G172500 Manihot esculenta HOM05D003355 ORTHO05D006192 5.2e-105 385.2 259 79.2
vmacro11671 Vaccinium macrocarpon HOM05D003355 ORTHO05D006192 5.2e-105 385.2 251 78.9
Thecc.09G244300 Theobroma cacao HOM05D003355 ORTHO05D006192 2.0e-104 383.3 279 72.0
Atru.chr3.4019 Acer truncatum HOM05D003355 ORTHO05D006192 5.7e-104 381.7 259 78.0
Cc05_g16150 Coffea canephora HOM05D003355 ORTHO05D006192 5.7e-104 381.7 252 79.4
Hma1.2p1_0334F.1_g128710 Hydrangea macrophylla HOM05D003355 ORTHO05D006192 5.7e-104 381.7 251 77.3
Eucgr.F01461 Eucalyptus grandis HOM05D003355 ORTHO05D006192 1.3e-103 380.6 251 77.3
Actinidia28067 Actinidia chinensis HOM05D003355 ORTHO05D006192 1.7e-103 380.2 243 80.2
Cpa.g.sc5.209 Carica papaya HOM05D003355 ORTHO05D006192 1.7e-103 380.2 251 78.1
QL02p047945 Quercus lobata HOM05D003355 ORTHO05D006192 3.7e-103 379.0 251 77.7
Gohir.A02G087800 Gossypium hirsutum HOM05D003355 ORTHO05D006192 4.8e-103 378.6 254 79.5
Rhsim10G0069800 Rhododendron simsii HOM05D003355 ORTHO05D006192 6.3e-103 378.3 303 66.7
SGA_v2.0_scaffold186G40213 Striga asiatica HOM05D003355 ORTHO05D006192 8.3e-103 377.9 251 78.1
Nitab4.5_0001583g0050 Nicotiana tabacum HOM05D003355 ORTHO05D006192 1.4e-102 377.1 251 76.9
Nitab4.5_0001225g0080 Nicotiana tabacum HOM05D003355 ORTHO05D006192 2.4e-102 376.3 251 76.9
CiPaw.05G009200 Carya illinoinensis HOM05D003355 ORTHO05D006192 3.1e-102 375.9 259 74.9
arahy.Tifrunner.gnm1.ann1.A7H436 Arachis hypogaea HOM05D003355 ORTHO05D006192 4.1e-102 375.6 259 77.6
arahy.Tifrunner.gnm1.ann1.WNI1ZF Arachis hypogaea HOM05D003355 ORTHO05D006192 4.1e-102 375.6 258 77.9
Solyc02g069950.3 Solanum lycopersicum HOM05D003355 ORTHO05D006192 4.1e-102 375.6 251 75.7
Sopen02g019090 Solanum pennellii HOM05D003355 ORTHO05D006192 4.1e-102 375.6 251 75.7
PGSC0003DMG400021187 Solanum tuberosum HOM05D003355 ORTHO05D006192 1.2e-101 374.0 251 75.3
TWI60G1544 Tripterygium wilfordii HOM05D003355 ORTHO05D006192 3.5e-101 372.5 251 76.5
THA.LOC104818391 Tarenaya hassleriana HOM05D003355 ORTHO05D006192 4.5e-101 372.1 252 77.8
Ca_06140_v3 Cicer arietinum L. HOM05D003355 ORTHO05D006192 7.7e-101 371.3 251 75.7
GSVIVG01037891001 Vitis vinifera HOM05D003355 ORTHO05D006192 7.7e-101 371.3 251 78.1
CAN.G179.43 Capsicum annuum HOM05D003355 ORTHO05D006192 1.0e-100 370.9 251 76.1
Ca_06141_v3 Cicer arietinum L. HOM05D003355 ORTHO05D006192 1.7e-100 370.2 251 75.7
Peaxi162Scf00616g00632 Petunia axillaris HOM05D003355 ORTHO05D006192 1.7e-100 370.2 251 79.3
ClCG09G022570 Citrullus lanatus HOM05D003355 ORTHO05D006192 2.9e-100 369.4 260 74.2
MSTRG.18871 Avicennia marina HOM05D003355 ORTHO05D006192 5.0e-100 368.6 251 78.1
Rhsim06G0239500 Rhododendron simsii HOM05D003355 ORTHO05D006192 6.5e-100 368.2 321 62.9
CsaV3_7G022720 Cucumis sativus L. HOM05D003355 ORTHO05D006192 1.1e-99 367.5 260 74.2
HPP92_009124 Vanilla planifolia HOM05D003355 ORTHO05D006192 1.9e-99 366.7 251 74.9
Gorai.005G116700 Gossypium raimondii HOM05D003355 ORTHO05D006192 3.2e-99 365.9 251 77.7
THA.LOC104826152 Tarenaya hassleriana HOM05D003355 ORTHO05D006192 1.2e-98 364.0 252 75.4
Medtr5g087520 Medicago truncatula HOM05D003355 ORTHO05D006192 1.6e-98 363.6 251 74.1
Potri.007G065500 Populus trichocarpa HOM05D003355 ORTHO05D006192 1.6e-98 363.6 251 74.1
TPR.G11717 Trifolium pratense HOM05D003355 ORTHO05D006192 2.1e-98 363.2 251 73.7
LjContig00564g0020908 Lotus japonicus HOM05D003355 ORTHO05D006192 3.6e-98 362.5 259 73.0
Migut.M01551 Erythranthe guttata HOM05D003355 ORTHO05D006192 6.1e-98 361.7 251 74.5
Sed0012728 Sechium edule HOM05D003355 ORTHO05D006192 2.3e-97 359.8 251 76.5
Dinv14066 Davidia involucrata HOM05D003355 ORTHO05D006192 3.0e-97 359.4 313 63.6
MD13G1044300 Malus domestica HOM05D003355 ORTHO05D006192 3.0e-97 359.4 251 74.1
MD16G1045100 Malus domestica HOM05D003355 ORTHO05D006192 3.0e-97 359.4 251 73.7
ECA240G2766 Erigeron canadensis HOM05D003355 ORTHO05D006192 4.0e-97 359.0 279 68.1
TPR.G15674 Trifolium pratense HOM05D003355 ORTHO05D006192 4.0e-97 359.0 260 71.9
Peaxi162Scf01064g00246 Petunia axillaris HOM05D003355 ORTHO05D006192 5.2e-97 358.6 252 76.2
Peaxi162Scf53097g00004 Petunia axillaris HOM05D003355 ORTHO05D006192 5.2e-97 358.6 252 76.2
Oeu052000.3 Olea europaea HOM05D003355 ORTHO05D006192 8.8e-97 357.8 251 73.3
Glyma.14G045600 Glycine max HOM05D003355 ORTHO05D006192 2.0e-96 356.7 254 73.6
DCAR_016825 Daucus carota HOM05D003355 ORTHO05D006192 2.6e-96 356.3 260 70.4
Glyma.02G273000 Glycine max HOM05D003355 ORTHO05D006192 3.4e-96 355.9 254 73.6
SalBow3G3003 Salvia bowleyana HOM05D003355 ORTHO05D006192 7.5e-96 354.8 251 75.7
Phvul.008G209100 Phaseolus vulgaris HOM05D003355 ORTHO05D006192 1.1e-94 350.9 251 72.5
RcHm_v2.0_Chr4g0435531 Rosa chinensis HOM05D003355 ORTHO05D006192 1.8e-94 350.1 253 71.9
C09p68600 Brassica napus HOM05D003355 ORTHO05D006192 3.1e-94 349.4 253 73.9
Psat2g023040 Pisum sativum HOM05D003355 ORTHO05D006192 3.1e-94 349.4 251 74.1
Carub.0006s0734 Capsella rubella HOM05D003355 ORTHO05D006192 4.1e-94 349.0 251 73.7
Aa31LG3G18130 Aethionema arabicum HOM05D003355 ORTHO05D006192 5.4e-94 348.6 267 71.9
PSO541G1087 Papaver somniferum HOM05D003355 ORTHO05D006192 3.5e-93 345.9 251 71.3
BcaB08g37262 Brassica carinata HOM05D003355 ORTHO05D006192 5.9e-93 345.1 251 73.3
PSO133G0101 Papaver somniferum HOM05D003355 ORTHO05D006192 7.8e-93 344.7 251 70.9
C02p03610 Brassica napus HOM05D003355 ORTHO05D006192 1.0e-92 344.4 253 71.5
Ciclev10020638m.g Citrus clementina HOM05D003355 ORTHO05D006192 3.8e-92 342.4 251 75.7
Lalb_Chr10g0105821 Lupinus albus HOM05D003355 ORTHO05D006192 6.6e-92 341.7 259 72.2
AL6G18890 Arabidopsis lyrata HOM05D003355 ORTHO05D006192 3.3e-91 339.3 253 70.0
A10p28340 Brassica napus HOM05D003355 ORTHO05D006192 3.3e-91 339.3 253 71.5
COL.COLO4_07227 Corchorus olitorius HOM05D003355 ORTHO05D006192 7.3e-91 338.2 255 70.6
Mapoly0002s0245 Marchantia polymorpha HOM05D003355 ORTHO05D006192 7.3e-91 338.2 270 66.3
Lsat_1_v5_gn_7_68200 Lactuca sativa HOM05D003355 ORTHO05D006192 1.6e-90 337.0 258 68.2
Pp3c24_18710 Physcomitrium patens HOM05D003355 ORTHO05D006192 1.6e-90 337.0 283 64.3
Os10g0452800 Oryza sativa ssp. japonica HOM05D003355 ORTHO05D006192 2.8e-90 336.3 253 69.6
BcaC03g13229 Brassica carinata HOM05D003355 ORTHO05D006192 8.0e-90 334.7 227 77.1
Thhalv10013751m.g Eutrema salsugineum HOM05D003355 ORTHO05D006192 8.0e-90 334.7 234 76.5
Sp6g34500 Schrenkiella parvula HOM05D003355 ORTHO05D006192 1.8e-89 333.6 252 72.2
AagrBONN_evm.TU.Sc2ySwM_117.1345 Anthoceros agrestis HOM05D003355 ORTHO05D006192 6.8e-89 331.6 259 66.8
AT5G08420 Arabidopsis thaliana HOM05D003355 ORTHO05D006192 8.9e-89 331.3 253 71.5
Aqoxy4G00025 Aquilegia oxysepala HOM05D003355 ORTHO05D006192 1.5e-88 330.5 258 71.3
HanXRQChr16g0498231 Helianthus annuus HOM05D003355 ORTHO05D006192 1.5e-88 330.5 251 71.3
FAN12G1390 Fragaria x ananassa HOM05D003355 ORTHO05D006192 2.6e-88 329.7 253 69.2
FAN12G1758 Fragaria x ananassa HOM05D003355 ORTHO05D006192 2.6e-88 329.7 253 69.2
SalBow8G2178 Salvia bowleyana HOM05D003355 ORTHO05D006192 3.4e-88 329.3 202 81.7
FvH4_4g27690 Fragaria vesca HOM05D003355 ORTHO05D006192 9.8e-88 327.8 253 68.8
FAN22G1021 Fragaria x ananassa HOM05D003355 ORTHO05D006192 9.8e-88 327.8 253 68.4
Lj8A188G54 Lonicera japonica HOM05D003355 ORTHO05D006192 3.2e-86 322.8 193 82.9
CDE07G1612 Ceratophyllum demersum HOM05D003355 ORTHO05D006192 9.2e-86 321.2 235 71.5
MELO3C012627.2 Cucumis melo HOM05D003355 ORTHO05D006192 2.7e-85 319.7 259 68.3
SMO169G0154 Selaginella moellendorffii HOM05D003355 ORTHO05D006192 7.8e-85 318.2 226 73.0
CARHR204600 Cardamine hirsuta HOM05D003355 ORTHO05D006192 1.7e-84 317.0 255 66.3
Cre12.g508200 Chlamydomonas reinhardtii HOM05D003355 ORTHO05D006192 1.7e-84 317.0 251 66.5
Prupe.1G308200 Prunus persica HOM05D003355 ORTHO05D006192 2.3e-84 316.6 251 66.5
Haze_10137 Corylus avellana HOM05D003355 ORTHO05D006192 6.6e-84 315.1 251 67.3
Cfa021382 Carpinus fangiana HOM05D003355 ORTHO05D006192 2.5e-83 313.2 186 84.4
PGR142G1845 Punica granatum HOM05D003355 ORTHO05D006192 2.8e-82 309.7 259 64.1
ATR0559G338 Amborella trichopoda HOM05D003355 ORTHO05D006192 4.7e-82 308.9 183 83.6
CBR_g23447 Chara braunii HOM05D003355 ORTHO05D006192 3.1e-81 306.2 228 70.2
Sed0008456 Sechium edule HOM05D003355 ORTHO05D006192 7.5e-80 301.6 272 62.1
QL02p103579 Quercus lobata HOM05D000004 ORTHO05D000002 4.1e-78 295.8 194 78.4
BolC9t59602H Brassica oleracea HOM05D003355 ORTHO05D006192 5.4e-78 295.4 253 66.8
Os01g0713800 Oryza sativa ssp. japonica HOM05D003355 ORTHO05D006192 2.0e-77 293.5 253 63.2
MCO15G216 Micromonas commoda HOM05D003355 ORTHO05D006192 3.5e-77 292.7 249 62.2
TAR371G0068 Trochodendron aralioides HOM05D003355 ORTHO05D006192 4.6e-77 292.4 218 69.3
BraA10t44881Z Brassica rapa HOM05D003355 ORTHO05D006192 1.5e-75 287.3 264 62.5
Zm00001eb155040 Zea mays HOM05D003355 ORTHO05D006192 1.5e-75 287.3 256 62.5
BolC2t06320H Brassica oleracea HOM05D003355 ORTHO05D006192 3.6e-74 282.7 233 67.4
MBI07_g21077_MAGBIO Magnolia biondii HOM05D003355 ORTHO05D006192 6.2e-74 282.0 264 59.1
FAN07G1422 Fragaria x ananassa HOM05D003355 ORTHO05D006192 6.8e-73 278.5 255 60.0
BraA02t04958Z Brassica rapa HOM05D003355 ORTHO05D006192 5.8e-72 275.4 263 59.7
SEGI_21388 Sequoiadendron giganteum HOM05D003355 ORTHO05D006192 3.0e-68 263.1 241 61.0
Cfa024749 Carpinus fangiana HOM05D003355 ORTHO05D006192 6.6e-68 261.9 232 62.9
PRCOL_00006993 Prasinoderma coloniale HOM05D003355 ORTHO05D006192 1.1e-65 254.6 256 56.6
Sabra07G0052100 Salix brachista HOM05D003355 ORTHO05D006192 5.2e-65 252.3 177 73.4
CDE07G0559 Ceratophyllum demersum HOM05D003355 ORTHO05D006192 4.3e-59 232.6 123 91.1
AagrBONN_evm.TU.Sc2ySwM_228.4702 Anthoceros agrestis HOM05D003355 ORTHO05D006192 2.1e-58 230.3 185 63.8
unitig_46.g18517 Utricularia gibba HOM05D003355 ORTHO05D006192 7.1e-54 215.3 256 52.0
CAN.G322.12 Capsicum annuum HOM05D003355 ORTHO05D006192 1.9e-43 180.6 147 65.3
CARHR204610 Cardamine hirsuta HOM05D003355 ORTHO05D006192 5.6e-43 179.1 171 57.9
GSVIVG01012285001 Vitis vinifera HOM05D003355 ORTHO05D006192 9.0e-41 171.8 93 87.1
C02p02380 Brassica napus HOM05D003355 ORTHO05D006192 3.5e-37 159.8 108 76.9
BraA02t04852Z Brassica rapa HOM05D003355 ORTHO05D006192 7.9e-37 158.7 108 75.0
CARHR204150 Cardamine hirsuta HOM05D003355 ORTHO05D006192 5.6e-35 152.5 155 54.2
BolC2t06203H Brassica oleracea HOM05D003355 ORTHO05D006192 1.8e-33 147.5 108 72.2
BolC3t13633H Brassica oleracea HOM05D003355 ORTHO05D006192 4.5e-32 142.9 118 61.9
RcHm_v2.0_Chr5g0049291 Rosa chinensis HOM05D003355 ORTHO05D015652 7.4e-27 125.6 138 51.4
BcaB05g21712 Brassica carinata HOM05D003355 ORTHO05D006192 9.0e-25 118.6 108 62.0
BraA03t10346Z Brassica rapa HOM05D003355 ORTHO05D006192 1.4e-22 111.3 111 52.3
SEGI_15731 Sequoiadendron giganteum HOM05D003355 ORTHO05D006192 7.9e-21 105.5 56 91.1
SEGI_37851 Sequoiadendron giganteum HOM05D003355 ORTHO05D006192 7.9e-21 105.5 56 91.1
Actinidia29266 Actinidia chinensis HOM05D003355 ORTHO05D006192 2.3e-20 104.0 107 57.0
RcHm_v2.0_Chr5g0014021 Rosa chinensis HOM05D003355 ORTHO05D013882 3.3e-19 100.1 141 45.4
RcHm_v2.0_Chr5g0014041 Rosa chinensis HOM05D003355 ORTHO05D013882 7.4e-19 99.0 143 42.7
QL02p103586 Quercus lobata HOM05D003355 ORTHO05D006192 2.2e-18 97.4 56 85.7
QL02p032103 Quercus lobata HOM05D003355 ORTHO05D002623 1.4e-17 94.7 126 50.8
RcHm_v2.0_Chr5g0014031 Rosa chinensis HOM05D003355 ORTHO05D013882 2.4e-17 94.0 142 39.4
QL01p011915 Quercus lobata HOM05D003355 ORTHO05D006192 3.1e-17 93.6 56 82.1
MD04G1231500 Malus domestica HOM05D003355 ORTHO05D013882 3.4e-16 90.1 134 43.3
FAN19G0319 Fragaria x ananassa HOM05D003355 ORTHO05D013882 5.9e-16 89.4 142 37.3
FvH4_1g11160 Fragaria vesca HOM05D003355 ORTHO05D013882 7.7e-16 89.0 142 38.0
Glyma.09G058066 Glycine max HOM05D003355 ORTHO05D013882 7.7e-16 89.0 50 78.0
Prupe.2G125300 Prunus persica HOM05D003355 ORTHO05D013882 4.2e-14 83.2 139 40.3
RcHm_v2.0_Chr7g0179721 Rosa chinensis HOM05D003355 ORTHO05D025419 3.6e-13 80.1 140 40.0
MD02G1015700 Malus domestica HOM05D003355 ORTHO05D247400 4.7e-13 79.7 134 38.1
Prupe.6G351700 Prunus persica HOM05D003355 ORTHO05D013882 3.9e-12 76.6 131 41.2
RcHm_v2.0_Chr3g0469061 Rosa chinensis HOM05D003355 ORTHO05D022549 1.7e-10 71.2 141 37.6
RcHm_v2.0_Chr3g0469081 Rosa chinensis HOM05D003355 ORTHO05D022549 1.7e-10 71.2 141 37.6
MD02G1059000 Malus domestica HOM05D003355 ORTHO05D247816 2.8e-10 70.5 127 40.9
FvH4_2g01170 Fragaria vesca HOM05D003355 ORTHO05D025419 3.1e-09 67.0 144 35.4
CAN.G79.30 Capsicum annuum HOM05D003355 ORTHO05D115802 9.1e-09 65.5 156 30.8
RcHm_v2.0_Chr3g0481091 Rosa chinensis HOM05D011179 ORTHO05D017929 4.5e-08 63.2 133 36.1
FvH4_3g45301 Fragaria vesca HOM05D003355 ORTHO05D013882 1.0e-07 62.0 104 35.6
RcHm_v2.0_Chr1g0368121 Rosa chinensis HOM05D003355 ORTHO05D019199 1.0e-07 62.0 137 31.4
RcHm_v2.0_Chr1g0368161 Rosa chinensis HOM05D003355 ORTHO05D019199 1.0e-07 62.0 141 31.9
RcHm_v2.0_Chr1g0368141 Rosa chinensis HOM05D003355 ORTHO05D019199 1.3e-07 61.6 137 31.4
FAN05G2571 Fragaria x ananassa HOM05D012211 ORTHO05D045515 1.1e-06 58.5 122 34.4
FAN15G0401 Fragaria x ananassa HOM05D003355 ORTHO05D015652 1.1e-06 58.5 142 33.1
FAN24G2229 Fragaria x ananassa HOM05D003355 ORTHO05D025419 1.4e-06 58.2 166 30.1
FAN28G2737 Fragaria x ananassa HOM05D003355 ORTHO05D013882 1.4e-06 58.2 59 42.4
MD02G1058900 Malus domestica HOM05D003355 ORTHO05D247873 1.9e-06 57.8 58 51.7
FvH4_6g42550 Fragaria vesca HOM05D012211 ORTHO05D045515 3.2e-06 57.0 122 34.4
FAN14G1550 Fragaria x ananassa HOM05D012211 ORTHO05D204992 3.2e-06 57.0 122 34.4
Lsat_1_v5_gn_4_108400 Lactuca sativa HOM05D003355 ORTHO05D005088 3.2e-06 57.0 33 90.9
RcHm_v2.0_Chr7g0210441 Rosa chinensis HOM05D012211 ORTHO05D029661 3.2e-06 57.0 125 36.0
FvH4_6g02020 Fragaria vesca HOM05D017208 ORTHO05D025447 5.5e-06 56.2 127 27.6
RcHm_v2.0_Chr7g0188481 Rosa chinensis HOM05D011179 ORTHO05D017929 5.5e-06 56.2 126 35.7
RcHm_v2.0_Chr2g0090081 Rosa chinensis HOM05D003355 ORTHO05D015652 7.2e-06 55.8 128 32.0


User provided reference genes

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