Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62032020 Chenopodium quinoa HOM05D005069 ORTHO05D006024 0.0e+00 2313.5 1150 100.0
AUR62018094 Chenopodium quinoa HOM05D005069 ORTHO05D006024 0.0e+00 1959.9 1111 88.6
EL10Ac3g06634 Beta vulgaris HOM05D005069 ORTHO05D006024 0.0e+00 1537.7 1075 71.7
Ah.00g238040 Amaranthus hybridus HOM05D005069 ORTHO05D006024 0.0e+00 1486.1 1097 68.7
Hund20526 Selenicereus undatus HOM05D005069 ORTHO05D006024 0.0e+00 1262.3 1182 56.3
QL06p010168 Quercus lobata HOM05D005069 ORTHO05D006024 0.0e+00 1192.6 1124 54.4
Actinidia40297 Actinidia chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1180.2 1068 55.2
Cfa015421 Carpinus fangiana HOM05D005069 ORTHO05D006024 0.0e+00 1167.1 1120 52.7
GSVIVG01035118001 Vitis vinifera HOM05D005069 ORTHO05D006024 0.0e+00 1162.9 1129 52.9
Lj6C680G7 Lonicera japonica HOM05D005069 ORTHO05D006024 0.0e+00 1161.0 1143 52.3
CiPaw.02G080300 Carya illinoinensis HOM05D005069 ORTHO05D006024 0.0e+00 1151.7 1155 51.6
Duzib151G0715 Durio zibethinus HOM05D005069 ORTHO05D006024 0.0e+00 1147.1 1122 51.5
Rhsim04G0224900 Rhododendron simsii HOM05D005069 ORTHO05D006024 0.0e+00 1121.3 1153 49.4
Nitab4.5_0000695g0020 Nicotiana tabacum HOM05D005069 ORTHO05D006024 0.0e+00 1119.4 1113 51.1
Prupe.1G132400 Prunus persica HOM05D005069 ORTHO05D006024 0.0e+00 1115.9 1128 51.3
RcHm_v2.0_Chr4g0423171 Rosa chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1109.0 1132 51.1
Atru.chr4.2893 Acer truncatum HOM05D005069 ORTHO05D006024 0.0e+00 1107.0 1124 51.4
Nitab4.5_0006814g0030 Nicotiana tabacum HOM05D005069 ORTHO05D006024 0.0e+00 1107.0 1151 49.8
Ca_10630_v3 Cicer arietinum L. HOM05D005069 ORTHO05D006024 0.0e+00 1097.4 1132 49.6
Gohir.A02G050600 Gossypium hirsutum HOM05D005069 ORTHO05D006024 0.0e+00 1092.8 1078 50.0
Ciclev10007186m.g Citrus clementina HOM05D005069 ORTHO05D006024 0.0e+00 1092.0 1083 51.9
Gorai.005G061500 Gossypium raimondii HOM05D005069 ORTHO05D006024 0.0e+00 1092.0 1078 50.4
TPR.G14183 Trifolium pratense HOM05D005069 ORTHO05D006024 0.0e+00 1088.6 1113 50.5
vmacro08181 Vaccinium macrocarpon HOM05D005069 ORTHO05D006024 0.0e+00 1085.5 1170 47.6
Sabra07G0100800 Salix brachista HOM05D005069 ORTHO05D006024 0.0e+00 1081.2 1131 49.0
FAN12G2768 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1079.3 1117 49.6
Potri.007G124900 Populus trichocarpa HOM05D005069 ORTHO05D006024 0.0e+00 1079.3 1144 48.4
CAN.G1639.1 Capsicum annuum HOM05D005069 ORTHO05D006024 0.0e+00 1078.2 1114 49.7
Aqoxy2G02916 Aquilegia oxysepala HOM05D005069 ORTHO05D006024 7.9e-312 1074.3 1116 49.0
Phvul.009G250200 Phaseolus vulgaris HOM05D005069 ORTHO05D006024 7.9e-312 1073.5 1076 51.1
FAN07G0695 Fragaria x ananassa HOM05D005069 ORTHO05D006024 1.6e-311 1073.2 1083 50.5
Psat1g155720 Pisum sativum HOM05D005069 ORTHO05D006024 3.9e-311 1071.6 1111 49.8
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 5.5e-311 1071.2 1099 50.1
Glyma.09G042600 Glycine max HOM05D005069 ORTHO05D006024 7.1e-311 1070.8 1104 50.2
VMungo1309G0850 Vigna mungo HOM05D005069 ORTHO05D006024 3.5e-310 1068.5 1099 50.5
Medtr2g435850 Medicago truncatula HOM05D005069 ORTHO05D006024 1.6e-307 1059.7 1052 50.8
Medtr2g436170 Medicago truncatula HOM05D005069 ORTHO05D006024 1.6e-307 1059.7 1052 50.8
Haze_01171 Corylus avellana HOM05D005069 ORTHO05D006024 2.1e-307 1059.3 1163 48.3
Cpa.g.sc50.170 Carica papaya HOM05D005069 ORTHO05D006024 3.6e-307 1058.5 1089 49.8
Medtr5g020160 Medicago truncatula HOM05D005069 ORTHO05D006024 1.4e-306 1056.6 1106 49.0
Peaxi162Scf00065g01432 Petunia axillaris HOM05D005069 ORTHO05D006024 3.1e-306 1055.4 1125 48.2
Solyc01g066510.3 Solanum lycopersicum HOM05D005069 ORTHO05D006024 3.1e-306 1055.4 1148 48.5
Lj6g0024094 Lotus japonicus HOM05D005069 ORTHO05D006024 9.2e-303 1043.9 1107 48.9
PGR004G1871 Punica granatum HOM05D005069 ORTHO05D006024 2.0e-302 1042.7 1120 48.9
PSO170G2573 Papaver somniferum HOM05D005069 ORTHO05D006024 2.7e-302 1042.3 1055 51.6
TWI09G0094 Tripterygium wilfordii HOM05D005069 ORTHO05D006024 4.6e-302 1041.6 1131 49.3
PSO407G0255 Papaver somniferum HOM05D005069 ORTHO05D006024 2.2e-296 1022.7 1050 51.0
Cc03_g01590 Coffea canephora HOM05D005069 ORTHO05D006024 1.4e-295 1020.0 1015 50.4
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 1.1e-292 1010.4 1020 50.2
arahy.Tifrunner.gnm1.ann1.9CA2Y1 Arachis hypogaea HOM05D005069 ORTHO05D006024 9.5e-292 1007.3 1074 49.2
Migut.G00133 Erythranthe guttata HOM05D005069 ORTHO05D006024 1.2e-291 1006.9 1094 47.3
Eucgr.H03956 Eucalyptus grandis HOM05D005069 ORTHO05D006024 4.7e-291 1005.0 1077 48.3
Manes.04G040225 Manihot esculenta HOM05D005069 ORTHO05D006024 1.5e-289 1000.0 1135 47.4
AL8G22670 Arabidopsis lyrata HOM05D005069 ORTHO05D006024 2.0e-289 999.6 1120 48.4
Dinv29734 Davidia involucrata HOM05D005069 ORTHO05D006024 2.6e-289 999.2 900 55.2
THA.LOC104818914 Tarenaya hassleriana HOM05D005069 ORTHO05D006024 2.6e-289 999.2 1077 48.4
FAN17G1646 Fragaria x ananassa HOM05D005069 ORTHO05D006024 1.1e-287 993.8 1070 48.8
AT5G49150 Arabidopsis thaliana HOM05D005069 ORTHO05D006024 4.1e-287 991.9 1080 47.9
arahy.Tifrunner.gnm1.ann1.I5RJVP Arachis hypogaea HOM05D005069 ORTHO05D006024 2.3e-285 986.1 1074 48.6
DCAR_023295 Daucus carota HOM05D005069 ORTHO05D006024 5.1e-285 984.9 1054 47.8
Carub.0008s0895 Capsella rubella HOM05D005069 ORTHO05D006024 1.1e-284 983.8 1070 47.9
BraA02t08774Z Brassica rapa HOM05D005069 ORTHO05D006024 3.1e-282 975.7 1092 47.7
SalBow2G1933 Salvia bowleyana HOM05D005069 ORTHO05D006024 6.9e-282 974.5 1053 47.0
Aa31LG11G8390 Aethionema arabicum HOM05D005069 ORTHO05D006024 5.8e-281 971.5 1082 47.3
BolC2t11776H Brassica oleracea HOM05D005069 ORTHO05D006024 9.9e-281 970.7 1081 47.9
BcaC03g17701 Brassica carinata HOM05D005069 ORTHO05D006024 3.8e-280 968.8 1082 47.9
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 8.4e-280 967.6 1081 47.8
Glyma.15G192400 Glycine max HOM05D005069 ORTHO05D006024 9.3e-279 964.1 953 51.4
A02p37900 Brassica napus HOM05D005069 ORTHO05D006024 1.0e-277 960.7 1090 47.4
Thhalv10005444m.g Eutrema salsugineum HOM05D005069 ORTHO05D006024 1.7e-277 959.9 1023 48.6
SGA_v2.0_scaffold67G22603 Striga asiatica HOM05D005069 ORTHO05D006024 3.0e-277 959.1 1034 47.1
Manes.04G045344 Manihot esculenta HOM05D005069 ORTHO05D006024 2.8e-275 952.6 1151 45.4
Manes.04G046000 Manihot esculenta HOM05D005069 ORTHO05D006024 5.8e-273 944.9 1147 45.6
Manes.04G046272 Manihot esculenta HOM05D005069 ORTHO05D006024 7.6e-273 944.5 1082 46.8
Lsat_1_v5_gn_6_96300 Lactuca sativa HOM05D005069 ORTHO05D006024 3.1e-258 896.0 1102 43.7
Nn3g21533 Nelumbo nucifera HOM05D005069 ORTHO05D006024 2.0e-257 893.3 893 51.0
CARHR186440 Cardamine hirsuta HOM05D005069 ORTHO05D006024 2.9e-256 889.4 942 48.2
CSS0043552 Camellia sinensis var. sinensis HOM05D005069 ORTHO05D006024 1.3e-251 874.0 949 49.0
Sp2g19500 Schrenkiella parvula HOM05D005069 ORTHO05D006024 6.9e-250 868.2 944 48.0
FvH4_4g18570 Fragaria vesca HOM05D005069 ORTHO05D006024 1.6e-246 857.1 883 50.1
CANSAT78G0554 Cannabis sativa HOM05D005069 ORTHO05D006024 2.7e-246 856.3 831 51.9
HPP92_022450 Vanilla planifolia HOM05D005069 ORTHO05D006024 8.8e-245 851.3 1065 43.8
ATR0580G217 Amborella trichopoda HOM05D005069 ORTHO05D006024 1.1e-244 850.9 1103 42.1
MBI15_g07480_MAGBIO Magnolia biondii HOM05D005069 ORTHO05D006024 1.5e-241 840.5 1116 43.0
TAR636G0683 Trochodendron aralioides HOM05D005069 ORTHO05D006024 2.7e-230 803.1 724 55.4
Sc13g0003270 Simmondsia chinensis HOM05D005069 ORTHO05D006024 2.5e-223 780.0 674 58.2
Lalb_Chr15g0086031 Lupinus albus HOM05D005069 ORTHO05D006024 2.1e-222 776.9 814 49.6
HanXRQChr03g0089541 Helianthus annuus HOM05D005069 ORTHO05D006024 2.3e-221 773.5 1050 39.6
Migut.G00081 Erythranthe guttata HOM05D005069 ORTHO05D006024 4.0e-213 746.1 997 41.0
Oeu035688.1 Olea europaea HOM05D005069 ORTHO05D006024 1.2e-209 734.6 776 49.2
Sopen01g028200 Solanum pennellii HOM05D005069 ORTHO05D006024 4.4e-204 716.1 768 47.8
Zm00001eb099800 Zea mays HOM05D005069 ORTHO05D006024 4.5e-201 706.1 1071 37.2
Hma1.2p1_0078F.1_g040620 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 7.8e-193 678.7 587 56.7
ECA240G4151 Erigeron canadensis HOM05D005069 ORTHO05D006024 3.0e-192 676.8 1113 36.7
Manes.04G046718 Manihot esculenta HOM05D005069 ORTHO05D006024 5.8e-188 662.5 669 51.9
CDE02G3967 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 3.6e-158 563.5 680 43.4
HanXRQChr03g0089561 Helianthus annuus HOM05D005069 ORTHO05D006024 8.7e-152 542.3 615 45.4
Thecc.04G288100 Theobroma cacao HOM05D005069 ORTHO05D006024 1.7e-139 501.5 505 50.7
Sc13g0003280 Simmondsia chinensis HOM05D005069 ORTHO05D006024 4.9e-139 500.0 345 72.5
Thecc.04G288200 Theobroma cacao HOM05D005069 ORTHO05D006024 1.6e-105 388.7 379 50.7
TAR636G0082 Trochodendron aralioides HOM05D005069 ORTHO05D006024 4.4e-103 380.6 379 50.9
SHI26096 Sapria himalayana HOM05D005069 ORTHO05D006024 6.3e-86 323.6 392 45.4
SMO174G0176 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 1.9e-74 285.4 1036 25.6
Gohir.D02G055533 Gossypium hirsutum HOM05D005069 ORTHO05D006024 2.0e-71 275.4 239 54.0
Manes.04G046727 Manihot esculenta HOM05D005069 ORTHO05D006024 1.3e-67 262.7 246 50.8
HanXRQChr03g0089551 Helianthus annuus HOM05D005069 ORTHO05D006024 8.6e-67 260.0 321 43.0
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 2.6e-63 248.4 255 47.8
Sabra07G0101000 Salix brachista HOM05D005069 ORTHO05D006024 2.7e-52 211.8 256 45.3
Hma1.2p1_1659F.1_g296120 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 1.3e-51 209.5 200 51.5
Lalb_Chr15g0086041 Lupinus albus HOM05D005069 ORTHO05D006024 1.1e-50 206.5 176 53.4
Hma1.2p1_0139F.1_g063315 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 2.4e-48 198.7 200 50.0
Hma1.2p1_0139F.1_g063320 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 3.4e-47 194.9 200 49.0
TPR.G29612 Trifolium pratense HOM05D005069 ORTHO05D006024 9.9e-47 193.4 209 49.3
Gohir.D02G055566 Gossypium hirsutum HOM05D005069 ORTHO05D006024 1.2e-44 186.4 158 54.4
SHI26092 Sapria himalayana HOM05D005069 ORTHO05D006024 1.6e-44 186.0 130 66.2
AagrBONN_evm.TU.Sc2ySwM_340.311 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.3e-43 183.0 947 22.2
SHI34756 Sapria himalayana HOM05D005069 ORTHO05D006024 3.1e-40 171.8 356 34.3
Os09g0424701 Oryza sativa ssp. japonica HOM05D005069 ORTHO05D006024 3.8e-38 164.9 207 38.6
AagrBONN_evm.TU.Sc2ySwM_228.988 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.9e-34 152.5 1053 22.2
SMO347G0277 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 2.4e-32 145.6 581 23.8
Mapoly0125s0024 Marchantia polymorpha HOM05D005069 ORTHO05D006024 9.0e-32 143.7 496 24.4
CDE02G3730 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 1.2e-31 143.3 120 52.5
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 1.2e-31 143.3 131 51.1
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 1.2e-28 133.3 126 50.0
Hma1.2p1_0078F.1_g040610 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 2.1e-28 132.5 119 51.3
SHI26089 Sapria himalayana HOM05D005069 ORTHO05D006024 4.6e-28 131.3 123 52.0
Lsat_1_v5_gn_8_152101 Lactuca sativa HOM05D005069 ORTHO05D006024 1.3e-25 123.2 175 35.4
BcaC03g17698 Brassica carinata HOM05D005069 ORTHO05D006024 1.0e-22 113.6 117 50.4
AagrBONN_evm.TU.Sc2ySwM_344.2936 Anthoceros agrestis HOM05D005069 ORTHO05D006024 4.2e-21 108.2 932 21.5
Lalb_Chr15g0086021 Lupinus albus HOM05D005069 ORTHO05D006024 3.0e-19 102.1 123 44.7
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 2.5e-18 99.0 86 50.0
Lsat_1_v5_gn_2_33340 Lactuca sativa HOM05D005069 ORTHO05D006024 9.7e-18 97.1 86 48.8
SMO109G0005 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 2.2e-17 95.9 366 24.9
TPR.G8658 Trifolium pratense HOM05D005069 ORTHO05D006024 8.5e-14 84.0 77 53.2
AagrBONN_evm.TU.Sc2ySwM_340.307 Anthoceros agrestis HOM05D005069 ORTHO05D006024 9.4e-13 80.5 327 26.3
TPR.G9115 Trifolium pratense HOM05D005069 ORTHO05D006024 9.4e-13 80.5 77 49.4
SMO111G0104 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 1.6e-12 79.7 258 26.0
AagrBONN_evm.TU.Sc2ySwM_340.310 Anthoceros agrestis HOM05D005069 ORTHO05D006024 4.6e-12 78.2 269 26.4
BcaC06g30714 Brassica carinata HOM05D005069 ORTHO05D006024 1.7e-09 69.7 92 38.0
BcaC05g26383 Brassica carinata HOM05D005069 ORTHO05D006024 4.8e-09 68.2 79 48.1
C05p24130 Brassica napus HOM05D005069 ORTHO05D006024 1.4e-08 66.6 79 46.8
CARHR286020 Cardamine hirsuta HOM05D005069 ORTHO05D006024 1.3e-06 60.1 100 34.0
CARHR285990 Cardamine hirsuta HOM05D005069 ORTHO05D006024 2.2e-06 59.3 78 43.6
CARHR286000 Cardamine hirsuta HOM05D005069 ORTHO05D006024 3.8e-06 58.5 53 49.1
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 5.0e-06 58.2 58 46.6


User provided reference genes

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