Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62031915 Chenopodium quinoa HOM05D002451 ORTHO05D005601 0.0e+00 2210.3 1143 100.0
AUR62022206 Chenopodium quinoa HOM05D002451 ORTHO05D005601 0.0e+00 2027.3 1121 93.5
EL10Ac9g21204 Beta vulgaris HOM05D002451 ORTHO05D005601 0.0e+00 1437.6 1069 71.7
Ah.01g022090 Amaranthus hybridus HOM05D002451 ORTHO05D005601 0.0e+00 1337.8 1144 64.6
Hund07601 Selenicereus undatus HOM05D002451 ORTHO05D005601 0.0e+00 1286.6 1146 61.6
Sc10g0007590 Simmondsia chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1204.9 1159 56.4
Dinv37977 Davidia involucrata HOM05D002451 ORTHO05D005601 0.0e+00 1167.5 1155 54.5
GSVIVG01016980001 Vitis vinifera HOM05D002451 ORTHO05D005601 0.0e+00 1166.8 1154 53.9
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 0.0e+00 1144.4 1152 53.0
Lj9C513G3 Lonicera japonica HOM05D002451 ORTHO05D005601 0.0e+00 1132.1 1148 54.0
Nn8g39071 Nelumbo nucifera HOM05D002451 ORTHO05D005601 0.0e+00 1127.1 1156 51.0
Prupe.3G059000 Prunus persica HOM05D002451 ORTHO05D005601 0.0e+00 1093.2 1166 50.4
QL05p020031 Quercus lobata HOM05D002451 ORTHO05D005601 0.0e+00 1093.2 1227 49.4
Cfa003647 Carpinus fangiana HOM05D002451 ORTHO05D005601 0.0e+00 1090.5 1146 51.4
CiPaw.01G231400 Carya illinoinensis HOM05D002451 ORTHO05D005601 0.0e+00 1089.7 1158 51.0
Potri.003G048800 Populus trichocarpa HOM05D002451 ORTHO05D005601 0.0e+00 1075.5 1151 51.3
MD09G1202800 Malus domestica HOM05D002451 ORTHO05D005601 1.6e-311 1072.8 1154 50.1
Duzib192G0210 Durio zibethinus HOM05D002451 ORTHO05D005601 1.6e-310 1069.7 1156 50.4
Rhsim08G0227600 Rhododendron simsii HOM05D002451 ORTHO05D005601 3.8e-309 1065.1 1217 48.6
Thecc.06G100100 Theobroma cacao HOM05D002451 ORTHO05D005601 7.2e-308 1060.8 1158 50.1
Aqoxy7G01406 Aquilegia oxysepala HOM05D002451 ORTHO05D005601 9.8e-305 1050.4 1147 49.3
TWI12G0408 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 2.8e-304 1048.9 1156 49.6
Manes.11G033500 Manihot esculenta HOM05D002451 ORTHO05D005601 3.7e-304 1048.5 1158 50.0
Haze_15848 Corylus avellana HOM05D002451 ORTHO05D005601 1.1e-303 1047.0 1165 49.6
PSO063G3373 Papaver somniferum HOM05D002451 ORTHO05D005601 1.1e-303 1047.0 1149 49.7
RcHm_v2.0_Chr2g0140541 Rosa chinensis HOM05D002451 ORTHO05D005601 5.4e-303 1044.6 1154 48.7
Ciclev10024743m.g Citrus clementina HOM05D002451 ORTHO05D005601 1.7e-301 1039.6 1161 49.2
Cc04_g02550 Coffea canephora HOM05D002451 ORTHO05D005601 4.7e-299 1031.6 1158 47.3
PSO832G2466 Papaver somniferum HOM05D002451 ORTHO05D005601 8.0e-299 1030.8 1149 49.3
COL.COLO4_30513 Corchorus olitorius HOM05D002451 ORTHO05D005601 1.4e-298 1030.0 1146 49.1
CANSAT56G2471 Cannabis sativa HOM05D002451 ORTHO05D005601 3.0e-298 1028.9 1150 48.7
Solyc03g121030.2 Solanum lycopersicum HOM05D002451 ORTHO05D005601 3.0e-298 1028.9 1153 48.0
Gorai.010G230600 Gossypium raimondii HOM05D002451 ORTHO05D005601 8.9e-298 1027.3 1150 48.6
Actinidia32098 Actinidia chinensis HOM05D002451 ORTHO05D005601 4.4e-297 1025.0 1154 49.6
Gohir.D06G197800 Gossypium hirsutum HOM05D002451 ORTHO05D005601 4.4e-297 1025.0 1150 48.5
Sopen03g039860 Solanum pennellii HOM05D002451 ORTHO05D005601 1.8e-295 1019.6 1155 48.1
Sed0021872 Sechium edule HOM05D002451 ORTHO05D005601 2.4e-295 1019.2 1155 49.0
Atru.chr1.3524 Acer truncatum HOM05D002451 ORTHO05D005601 7.3e-292 1007.7 1157 48.1
Glyma.13G354600 Glycine max HOM05D002451 ORTHO05D005601 6.1e-291 1004.6 1146 48.5
CsaV3_7G035270 Cucumis sativus L. HOM05D002451 ORTHO05D005601 3.1e-290 1002.3 1157 48.0
Migut.I00897 Erythranthe guttata HOM05D002451 ORTHO05D005601 4.0e-290 1001.9 1152 48.4
FAN05G4332 Fragaria x ananassa HOM05D002451 ORTHO05D005601 5.8e-289 998.0 1155 47.6
MSTRG.11027 Avicennia marina HOM05D002451 ORTHO05D005601 7.5e-289 997.7 1148 48.8
Phvul.005G166100 Phaseolus vulgaris HOM05D002451 ORTHO05D005601 9.2e-287 990.7 1152 47.7
Ca_01165_v3 Cicer arietinum L. HOM05D002451 ORTHO05D005601 1.1e-279 967.2 1151 47.4
TPR.G6596 Trifolium pratense HOM05D002451 ORTHO05D005601 1.9e-279 966.5 1151 46.7
Glyma.15G019600 Glycine max HOM05D002451 ORTHO05D005601 7.1e-279 964.5 1150 46.6
FAN02G1073 Fragaria x ananassa HOM05D002451 ORTHO05D005601 1.3e-277 960.3 1130 46.5
Lalb_Chr14g0373021 Lupinus albus HOM05D002451 ORTHO05D005601 3.0e-277 959.1 1145 47.6
MELO3C024437.2 Cucumis melo HOM05D002451 ORTHO05D005601 2.5e-276 956.1 1118 47.7
Lsat_1_v5_gn_4_97440 Lactuca sativa HOM05D002451 ORTHO05D005601 5.6e-276 954.9 1138 46.5
ECA232G2699 Erigeron canadensis HOM05D002451 ORTHO05D005601 2.8e-275 952.6 1148 47.1
MBI04_g20307_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D005601 3.6e-275 952.2 1228 44.6
Medtr2g100870 Medicago truncatula HOM05D002451 ORTHO05D005601 4.0e-274 948.7 1152 46.2
Lj1g0009957 Lotus japonicus HOM05D002451 ORTHO05D005601 8.9e-274 947.6 1151 46.3
PGR102G3176 Punica granatum HOM05D002451 ORTHO05D005601 8.9e-274 947.6 1153 45.8
THA.LOC104809828 Tarenaya hassleriana HOM05D002451 ORTHO05D005601 4.9e-272 941.8 1151 45.4
Gohir.A06G189400 Gossypium hirsutum HOM05D002451 ORTHO05D005601 1.6e-267 926.8 1098 46.6
ATR0705G185 Amborella trichopoda HOM05D002451 ORTHO05D005601 6.8e-266 921.4 1173 44.5
Medtr5g085950 Medicago truncatula HOM05D002451 ORTHO05D005601 1.3e-264 917.1 1162 44.5
arahy.Tifrunner.gnm1.ann1.65X03I Arachis hypogaea HOM05D002451 ORTHO05D005601 1.6e-262 910.2 1149 44.4
TWI75G1452 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 2.7e-262 909.4 1159 45.5
FvH4_6g32400 Fragaria vesca HOM05D002451 ORTHO05D005601 7.8e-262 907.9 1068 46.7
HanXRQChr09g0276251 Helianthus annuus HOM05D002451 ORTHO05D005601 2.3e-261 906.4 1138 44.6
arahy.Tifrunner.gnm1.ann1.T566S8 Arachis hypogaea HOM05D002451 ORTHO05D005601 3.9e-261 905.6 1150 44.5
vmacro18852 Vaccinium macrocarpon HOM05D002451 ORTHO05D005601 1.4e-258 897.1 1020 48.3
Eucgr.F03079 Eucalyptus grandis HOM05D002451 ORTHO05D005601 1.5e-257 893.6 1109 45.2
Sp2g18530 Schrenkiella parvula HOM05D002451 ORTHO05D005601 2.0e-257 893.3 1149 43.1
Thhalv10003552m.g Eutrema salsugineum HOM05D002451 ORTHO05D005601 1.7e-256 890.2 1137 43.1
AL8G20730 Arabidopsis lyrata HOM05D002451 ORTHO05D005601 6.0e-254 881.7 1147 42.4
AT5G48120 Arabidopsis thaliana HOM05D002451 ORTHO05D005601 1.0e-253 880.9 1148 42.9
BcaB07g30001 Brassica carinata HOM05D002451 ORTHO05D005601 2.1e-251 873.2 1144 42.2
Carub.0008s0769 Capsella rubella HOM05D002451 ORTHO05D005601 2.1e-251 873.2 1148 42.1
Aa31LG11G5160 Aethionema arabicum HOM05D002451 ORTHO05D005601 2.8e-251 872.8 1140 41.8
Oeu017119.1 Olea europaea HOM05D002451 ORTHO05D005601 4.0e-250 869.0 1071 45.8
CAN.G1143.14 Capsicum annuum HOM05D002451 ORTHO05D005601 2.0e-249 866.7 1034 46.2
BraA02t08709Z Brassica rapa HOM05D002451 ORTHO05D005601 1.7e-248 863.6 1152 41.5
BcaC03g17628 Brassica carinata HOM05D002451 ORTHO05D005601 7.1e-247 858.2 1143 41.2
A02p37220 Brassica napus HOM05D002451 ORTHO05D005601 6.0e-246 855.1 1149 41.4
BolC2t11683H Brassica oleracea HOM05D002451 ORTHO05D005601 1.8e-245 853.6 1144 41.2
C02p56250 Brassica napus HOM05D002451 ORTHO05D005601 2.5e-244 849.7 1143 40.9
Nitab4.5_0006902g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 1.4e-242 844.0 1140 43.3
HPP92_007690 Vanilla planifolia HOM05D002451 ORTHO05D005601 5.8e-241 838.6 1166 41.2
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 4.9e-240 835.5 1054 45.4
CARHR259290 Cardamine hirsuta HOM05D002451 ORTHO05D005601 3.2e-239 832.8 1149 41.8
Psat5g295800 Pisum sativum HOM05D002451 ORTHO05D005601 5.7e-236 822.0 1101 44.7
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 8.2e-235 818.1 1161 42.3
Sabra03G0029300 Salix brachista HOM05D002451 ORTHO05D005601 1.6e-227 793.9 1099 43.5
Zm00001eb301230 Zea mays HOM05D002451 ORTHO05D005601 1.4e-226 790.8 1157 39.9
Nitab4.5_0006467g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 3.1e-226 789.6 1139 41.3
FAN14G4820 Fragaria x ananassa HOM05D002451 ORTHO05D005601 8.2e-211 738.4 954 43.5
Peaxi162Scf00038g01032 Petunia axillaris HOM05D002451 ORTHO05D005601 8.2e-211 738.4 910 45.2
DCAR_023080 Daucus carota HOM05D002451 ORTHO05D005601 8.0e-206 721.8 1148 39.5
ClCG09G000210 Citrullus lanatus HOM05D002451 ORTHO05D005601 1.7e-203 714.1 948 44.2
SEGI_26537 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 2.8e-166 590.5 1054 36.5
Pp3c9_4950 Physcomitrium patens HOM05D002451 ORTHO05D005601 9.3e-146 522.3 1179 31.6
Mapoly0036s0119 Marchantia polymorpha HOM05D002451 ORTHO05D005601 2.2e-139 501.1 1182 30.3
Os07g0177100 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D005601 1.0e-128 465.7 641 40.9
unitig_88.g27601 Utricularia gibba HOM05D002451 ORTHO05D005601 2.1e-113 414.8 690 38.0
CSS0036196 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.3e-110 405.6 451 51.2
SMO111G0185 Selaginella moellendorffii HOM05D002451 ORTHO05D005601 2.4e-109 401.4 1136 28.4
Aa31sc1931G10 Aethionema arabicum HOM05D002451 ORTHO05D005601 5.9e-108 396.7 528 39.4
TAR624G0206 Trochodendron aralioides HOM05D002451 ORTHO05D005601 6.3e-102 376.7 438 46.6
CSS0044368 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 6.1e-97 360.1 337 53.4
CDE05G1834 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 1.1e-90 339.3 435 45.5
Cpa.g.sc25.8 Carica papaya HOM05D002451 ORTHO05D005601 2.4e-85 321.6 510 39.6
Aa31LG11G5130 Aethionema arabicum HOM05D002451 ORTHO05D005601 5.3e-85 320.5 438 41.8
ClCG09G000220 Citrullus lanatus HOM05D002451 ORTHO05D005601 2.7e-76 291.6 228 61.4
CBR_g26190 Chara braunii HOM05D002451 ORTHO05D005601 3.8e-75 287.7 1291 24.3
CDE05G2530 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 1.0e-67 263.1 222 57.7
TAR624G0246 Trochodendron aralioides HOM05D002451 ORTHO05D005601 2.3e-64 251.9 195 66.2
Sc17g0002930 Simmondsia chinensis HOM05D002451 ORTHO05D005601 5.7e-63 247.3 183 66.1
QL05p020001 Quercus lobata HOM05D002451 ORTHO05D005601 2.3e-59 235.3 305 47.5
Cpa.g.sc25.4 Carica papaya HOM05D002451 ORTHO05D005601 6.6e-59 233.8 155 69.7
Cpa.g.sc25.5 Carica papaya HOM05D002451 ORTHO05D005601 3.0e-51 208.4 252 44.8
Sabra03G0029200 Salix brachista HOM05D002451 ORTHO05D005601 6.0e-44 184.1 184 50.5
Aa31LG9G10330 Aethionema arabicum HOM05D002451 ORTHO05D005601 7.8e-44 183.7 319 36.4
HPP92_007773 Vanilla planifolia HOM05D002451 ORTHO05D005601 4.7e-41 174.5 159 54.1
EL10Ac9g21205 Beta vulgaris HOM05D002451 ORTHO05D005601 4.4e-39 167.9 180 56.7
TAR624G0921 Trochodendron aralioides HOM05D002451 ORTHO05D005601 3.8e-38 164.9 234 39.7
TAR624G0431 Trochodendron aralioides HOM05D002451 ORTHO05D005601 9.6e-34 150.2 118 63.6
MCO12G207 Micromonas commoda HOM05D002451 ORTHO05D005601 3.1e-32 145.2 1280 22.6
unitig_88.g27602 Utricularia gibba HOM05D002451 ORTHO05D005601 3.8e-30 138.3 134 53.0
HPP92_007804 Vanilla planifolia HOM05D002451 ORTHO05D005601 5.4e-29 134.4 162 47.5
A06p15140 Brassica napus HOM05D002451 ORTHO05D020166 1.3e-27 129.8 148 46.6
BraA06t24629Z Brassica rapa HOM05D002451 ORTHO05D020166 1.3e-27 129.8 148 46.6
Psat3g036640 Pisum sativum HOM05D002451 ORTHO05D005601 3.9e-27 128.3 173 42.2
SEGI_23779 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 1.9e-26 125.9 116 54.3
Aa31LG9G10320 Aethionema arabicum HOM05D002451 ORTHO05D005601 5.3e-24 117.9 121 47.9
Zm00001eb320400 Zea mays HOM05D002451 ORTHO05D005601 6.9e-24 117.5 274 30.7
Psat4g171400 Pisum sativum HOM05D002451 ORTHO05D005601 2.6e-23 115.5 126 49.2
CSS0026050 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 9.9e-23 113.6 96 60.4
CSS0028178 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 9.9e-23 113.6 96 60.4
Cpa.g.sc25.3 Carica papaya HOM05D002451 ORTHO05D005601 4.2e-21 108.2 90 57.8
Lj1g0017121 Lotus japonicus HOM05D002451 ORTHO05D005601 2.1e-20 105.9 93 54.8
SHI11089 Sapria himalayana HOM05D002451 ORTHO05D005601 1.9e-18 99.4 80 57.5
Cre13.g605050 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D005601 1.3e-17 96.7 143 38.5
SHI11090 Sapria himalayana HOM05D002451 ORTHO05D005601 6.2e-17 94.4 63 60.3
CSS0023144 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.4e-16 93.2 122 43.4
SHI11092 Sapria himalayana HOM05D002451 ORTHO05D005601 9.9e-15 87.0 128 35.2
Zm00001eb029900 Zea mays HOM05D002451 ORTHO05D005601 9.9e-15 87.0 90 46.7
Hund28828 Selenicereus undatus HOM05D002451 ORTHO05D005601 1.3e-14 86.7 68 67.6
Peaxi162Scf00038g01031 Petunia axillaris HOM05D002451 ORTHO05D005601 1.7e-14 86.3 54 75.9
Hund28869 Selenicereus undatus HOM05D002451 ORTHO05D005601 2.9e-14 85.5 64 70.3
TPR.G18835 Trifolium pratense HOM05D002451 ORTHO05D005601 3.8e-14 85.1 62 61.3
SGA_v2.0_scaffold123G33404 Striga asiatica HOM05D002451 ORTHO05D005601 6.0e-12 77.8 92 43.5
vmacro17797 Vaccinium macrocarpon HOM05D000003 ORTHO05D000007 1.9e-10 72.8 81 46.9
TPR.G18837 Trifolium pratense HOM05D002451 ORTHO05D005601 4.3e-10 71.6 73 50.7
Medtr5g055460 Medicago truncatula HOM05D002451 ORTHO05D005601 2.4e-08 65.9 51 52.9


User provided reference genes

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