Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62031644 Chenopodium quinoa HOM05D001960 ORTHO05D007725 1.7e-265 918.7 450 100.0
AUR62038879 Chenopodium quinoa HOM05D001960 ORTHO05D007725 2.3e-257 891.7 460 95.7
Hund13245 Selenicereus undatus HOM05D001960 ORTHO05D007725 1.5e-224 782.7 451 84.3
EL10Ac2g03435 Beta vulgaris HOM05D001960 ORTHO05D007725 2.9e-220 768.5 452 82.5
QL02p080348 Quercus lobata HOM05D001960 ORTHO05D007725 2.8e-215 751.9 448 78.8
Gorai.012G056000 Gossypium raimondii HOM05D001960 ORTHO05D007725 2.4e-214 748.8 441 79.6
Gohir.D04G050500 Gossypium hirsutum HOM05D001960 ORTHO05D007725 9.1e-214 746.9 441 79.1
Actinidia06068 Actinidia chinensis HOM05D001960 ORTHO05D007725 1.7e-212 742.7 450 79.1
Atru.chr8.1915 Acer truncatum HOM05D001960 ORTHO05D007725 2.9e-212 741.9 446 78.7
Thecc.04G074100 Theobroma cacao HOM05D001960 ORTHO05D007725 2.9e-212 741.9 422 82.2
CANSAT64G2224 Cannabis sativa HOM05D001960 ORTHO05D007725 5.5e-211 737.6 445 79.8
Eucgr.J02136 Eucalyptus grandis HOM05D001960 ORTHO05D007725 1.2e-210 736.5 445 78.0
CSS0036057 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 6.1e-210 734.2 452 76.8
TWI34G1416 Tripterygium wilfordii HOM05D001960 ORTHO05D007725 6.1e-210 734.2 450 77.1
TAR371G1229 Trochodendron aralioides HOM05D001960 ORTHO05D007725 1.4e-209 733.0 449 77.5
Hma1.2p1_1232F.1_g268880 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 2.3e-209 732.3 432 79.2
Sc10g0003830 Simmondsia chinensis HOM05D001960 ORTHO05D007725 2.3e-209 732.3 447 79.0
Cfa007507 Carpinus fangiana HOM05D001960 ORTHO05D007725 1.5e-208 729.6 445 77.3
Sabra17G0069200 Salix brachista HOM05D001960 ORTHO05D007725 1.5e-208 729.6 449 77.1
Sopen02g032390 Solanum pennellii HOM05D001960 ORTHO05D007725 3.3e-208 728.4 451 77.2
MELO3C021973.2 Cucumis melo HOM05D001960 ORTHO05D007725 5.7e-208 727.6 447 77.0
Solyc02g087640.3 Solanum lycopersicum HOM05D001960 ORTHO05D007725 5.7e-208 727.6 451 77.2
GSVIVG01032604001 Vitis vinifera HOM05D001960 ORTHO05D007725 7.5e-208 727.2 443 77.9
CiPaw.03G030400 Carya illinoinensis HOM05D001960 ORTHO05D007725 9.7e-208 726.9 443 77.2
RhsimUnG0055000 Rhododendron simsii HOM05D001960 ORTHO05D007725 9.7e-208 726.9 445 77.3
Manes.17G020800 Manihot esculenta HOM05D001960 ORTHO05D007725 1.3e-207 726.5 450 77.3
Potri.017G077000 Populus trichocarpa HOM05D001960 ORTHO05D007725 1.3e-207 726.5 427 79.4
CsaV3_5G037870 Cucumis sativus L. HOM05D001960 ORTHO05D007725 1.1e-206 723.4 447 76.7
PGSC0003DMG400001411 Solanum tuberosum HOM05D001960 ORTHO05D007725 1.4e-206 723.0 451 76.5
Prupe.3G272300 Prunus persica HOM05D001960 ORTHO05D007725 2.4e-206 722.2 442 77.4
Nn3g17123 Nelumbo nucifera HOM05D001960 ORTHO05D007725 5.3e-206 721.1 451 75.8
Ciclev10011611m.g Citrus clementina HOM05D001960 ORTHO05D007725 7.0e-206 720.7 441 76.9
RcHm_v2.0_Chr2g0169211 Rosa chinensis HOM05D001960 ORTHO05D007725 1.2e-205 719.9 449 76.2
Nitab4.5_0002265g0270 Nicotiana tabacum HOM05D001960 ORTHO05D007725 4.5e-205 718.0 449 76.2
Psat7g177520 Pisum sativum HOM05D001960 ORTHO05D007725 5.9e-205 717.6 426 78.6
CAN.G206.108 Capsicum annuum HOM05D001960 ORTHO05D007725 1.0e-204 716.8 449 75.3
Nitab4.5_0000564g0320 Nicotiana tabacum HOM05D001960 ORTHO05D007725 1.3e-204 716.5 449 75.7
Thhalv10004119m.g Eutrema salsugineum HOM05D001960 ORTHO05D007725 1.7e-204 716.1 450 75.3
THA.LOC104823928 Tarenaya hassleriana HOM05D001960 ORTHO05D007725 2.9e-204 715.3 445 76.6
Phvul.011G027550 Phaseolus vulgaris HOM05D001960 ORTHO05D007725 6.5e-204 714.1 428 77.8
TPR.G17186 Trifolium pratense HOM05D001960 ORTHO05D007725 6.5e-204 714.1 448 75.0
arahy.Tifrunner.gnm1.ann1.9ZMQ3R Arachis hypogaea HOM05D001960 ORTHO05D007725 1.5e-203 713.0 446 75.6
Lj3g0011182 Lotus japonicus HOM05D001960 ORTHO05D007725 1.6e-202 709.5 438 75.8
arahy.Tifrunner.gnm1.ann1.57V2RC Arachis hypogaea HOM05D001960 ORTHO05D007725 2.1e-202 709.1 445 75.5
Medtr4g075200 Medicago truncatula HOM05D001960 ORTHO05D007725 2.7e-202 708.8 427 77.5
Sed0013706 Sechium edule HOM05D001960 ORTHO05D007725 2.7e-202 708.8 428 77.8
Haze_14586 Corylus avellana HOM05D001960 ORTHO05D007725 6.1e-202 707.6 481 70.9
VMungo1127G2029 Vigna mungo HOM05D001960 ORTHO05D007725 3.0e-201 705.3 435 75.9
Carub.0005s0723 Capsella rubella HOM05D001960 ORTHO05D007725 4.0e-201 704.9 433 76.0
FvH4_6g49351 Fragaria vesca HOM05D001960 ORTHO05D007725 4.0e-201 704.9 424 77.1
BcaC06g30901 Brassica carinata HOM05D001960 ORTHO05D007725 5.2e-201 704.5 450 73.8
Glyma.11G099200 Glycine max HOM05D001960 ORTHO05D007725 5.2e-201 704.5 433 76.7
AT3G28700 Arabidopsis thaliana HOM05D001960 ORTHO05D007725 8.8e-201 703.7 435 76.6
Sed0024340 Sechium edule HOM05D001960 ORTHO05D007725 8.8e-201 703.7 438 75.3
FAN05G4054 Fragaria x ananassa HOM05D001960 ORTHO05D007725 1.2e-200 703.4 445 75.1
ClCG09G018410 Citrullus lanatus HOM05D001960 ORTHO05D007725 1.5e-200 703.0 465 72.5
BcaC06g33634 Brassica carinata HOM05D001960 ORTHO05D007725 2.0e-200 702.6 431 75.4
MD17G1046800 Malus domestica HOM05D001960 ORTHO05D007725 2.0e-200 702.6 440 74.8
Ca_20945_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 2.6e-200 702.2 427 77.0
PGR083G0481 Punica granatum HOM05D001960 ORTHO05D007725 2.6e-200 702.2 443 75.2
C07p37650 Brassica napus HOM05D001960 ORTHO05D004348 3.4e-200 701.8 430 75.6
BolC7t44281H Brassica oleracea HOM05D001960 ORTHO05D007725 3.4e-200 701.8 430 75.6
AL5G18340 Arabidopsis lyrata HOM05D001960 ORTHO05D007725 4.4e-200 701.4 435 75.9
Cc01_g00810 Coffea canephora HOM05D001960 ORTHO05D007725 5.7e-200 701.0 447 74.7
CARHR286600 Cardamine hirsuta HOM05D001960 ORTHO05D007725 9.8e-200 700.3 432 75.5
MD09G1045900 Malus domestica HOM05D001960 ORTHO05D007725 2.2e-199 699.1 440 75.0
Os01g0588800 Oryza sativa ssp. japonica HOM05D001960 ORTHO05D007725 4.8e-199 698.0 437 75.5
SalBow1G8169 Salvia bowleyana HOM05D001960 ORTHO05D007725 4.8e-199 698.0 423 76.1
DCAR_006720 Daucus carota HOM05D001960 ORTHO05D007725 2.4e-198 695.7 484 69.2
A06p40400 Brassica napus HOM05D001960 ORTHO05D004348 4.1e-198 694.9 430 75.1
BraA06t26958Z Brassica rapa HOM05D001960 ORTHO05D004348 4.1e-198 694.9 430 75.1
Ca_19010_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 7.0e-198 694.1 427 76.3
Sp2g17340 Schrenkiella parvula HOM05D001960 ORTHO05D007725 7.0e-198 694.1 446 73.1
SGA_v2.0_scaffold30G12523 Striga asiatica HOM05D001960 ORTHO05D007725 5.9e-197 691.0 445 73.3
MSTRG.15488 Avicennia marina HOM05D001960 ORTHO05D007725 1.0e-196 690.3 446 73.1
Lalb_Chr19g0139461 Lupinus albus HOM05D001960 ORTHO05D007725 1.7e-196 689.5 425 75.1
PSO832G0234 Papaver somniferum HOM05D001960 ORTHO05D007725 3.8e-196 688.3 423 77.3
Lsat_1_v5_gn_4_179920 Lactuca sativa HOM05D001960 ORTHO05D007725 5.0e-196 688.0 446 73.8
Ah.12g065370 Amaranthus hybridus HOM05D001960 ORTHO05D007725 8.6e-196 687.2 394 83.8
Oeu060916.1 Olea europaea HOM05D001960 ORTHO05D007725 1.5e-195 686.4 446 73.8
Migut.K01335 Erythranthe guttata HOM05D001960 ORTHO05D007725 9.5e-195 683.7 444 72.3
Lj7A401T79 Lonicera japonica HOM05D001960 ORTHO05D007725 1.0e-193 680.2 446 73.3
Aa31LG2G4510 Aethionema arabicum HOM05D001960 ORTHO05D007725 1.4e-193 679.9 431 75.2
HanXRQChr09g0265611 Helianthus annuus HOM05D001960 ORTHO05D007725 4.4e-192 674.9 429 73.2
MBI15_g37231_MAGBIO Magnolia biondii HOM05D001960 ORTHO05D007725 1.3e-191 673.3 416 76.7
FAN14G4702 Fragaria x ananassa HOM05D001960 ORTHO05D007725 8.3e-191 670.6 404 77.0
Aqoxy3G03264 Aquilegia oxysepala HOM05D001960 ORTHO05D007725 2.0e-189 666.0 402 77.1
Oeu033340.1 Olea europaea HOM05D001960 ORTHO05D007725 2.7e-189 665.6 423 74.5
ATR1120G150 Amborella trichopoda HOM05D001960 ORTHO05D007725 1.2e-186 656.8 449 69.9
Gohir.A05G364200 Gossypium hirsutum HOM05D001960 ORTHO05D007725 3.6e-186 655.2 406 75.6
HPP92_022934 Vanilla planifolia HOM05D001960 ORTHO05D007725 2.2e-183 646.0 438 69.6
FAN02G2179 Fragaria x ananassa HOM05D001960 ORTHO05D007725 6.4e-183 644.4 482 65.8
vmacro05739 Vaccinium macrocarpon HOM05D001960 ORTHO05D007725 7.0e-182 641.0 453 70.2
Zm00001eb357440 Zea mays HOM05D001960 ORTHO05D007725 4.6e-181 638.3 425 72.2
CSS0006137 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 6.0e-181 637.9 379 78.4
HPP92_022922 Vanilla planifolia HOM05D001960 ORTHO05D007725 5.4e-174 614.8 412 71.4
C09p03940 Brassica napus HOM05D001960 ORTHO05D007725 1.5e-171 606.7 446 65.7
COL.COLO4_25201 Corchorus olitorius HOM05D001960 ORTHO05D007725 7.3e-171 604.4 447 68.7
PSO591G0496 Papaver somniferum HOM05D001960 ORTHO05D007725 9.5e-171 604.0 423 70.2
SEGI_03019 Sequoiadendron giganteum HOM05D001960 ORTHO05D007725 1.2e-170 603.6 449 64.8
ECA232G3528 Erigeron canadensis HOM05D001960 ORTHO05D007725 2.8e-170 602.4 379 73.9
BolC9t53325H Brassica oleracea HOM05D001960 ORTHO05D007725 4.9e-167 591.7 434 66.4
Pp3c8_16780 Physcomitrium patens HOM05D001960 ORTHO05D007725 6.2e-162 574.7 467 60.0
unitig_747.g21836 Utricularia gibba HOM05D001960 ORTHO05D007725 1.8e-161 573.2 411 65.7
Dinv33716 Davidia involucrata HOM05D001960 ORTHO05D007725 4.0e-161 572.0 342 77.2
Peaxi162Scf00129g00533 Petunia axillaris HOM05D001960 ORTHO05D007725 1.7e-159 566.6 391 70.1
ECA232G0063 Erigeron canadensis HOM05D001960 ORTHO05D007725 1.6e-154 550.1 379 69.4
BcaC04g23865 Brassica carinata HOM05D001960 ORTHO05D004348 2.8e-154 549.3 410 65.1
Mapoly0027s0012 Marchantia polymorpha HOM05D001960 ORTHO05D007725 1.1e-150 537.3 450 59.6
CDE05G2812 Ceratophyllum demersum HOM05D001960 ORTHO05D007725 5.3e-145 518.5 378 66.4
AagrBONN_evm.TU.Sc2ySwM_368.2217 Anthoceros agrestis HOM05D001960 ORTHO05D007725 5.8e-144 515.0 456 55.5
Dinv34989 Davidia involucrata HOM05D001960 ORTHO05D007725 2.4e-142 509.6 327 74.6
Hma1.2p1_1232F.1_g268890 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 6.5e-119 431.8 257 77.8
C04p40510 Brassica napus HOM05D001960 ORTHO05D007725 4.8e-114 415.6 298 66.4
BolC4t25631H Brassica oleracea HOM05D001960 ORTHO05D007725 4.8e-114 415.6 298 66.4
SMO200G0063 Selaginella moellendorffii HOM05D001960 ORTHO05D007725 8.2e-114 414.8 392 52.8
Ca_19017_v3 Cicer arietinum L. HOM05D000077 ORTHO05D002511 3.0e-108 396.4 348 57.2
C05p44890 Brassica napus HOM05D001960 ORTHO05D007725 1.3e-103 380.9 296 62.5
C08p31240 Brassica napus HOM05D001960 ORTHO05D007725 6.7e-100 368.6 286 62.9
BolC8t50105H Brassica oleracea HOM05D001960 ORTHO05D007725 1.3e-98 364.4 271 65.3
BcaC02g09250 Brassica carinata HOM05D001960 ORTHO05D007725 6.3e-98 362.1 265 66.0
C08p24890 Brassica napus HOM05D001960 ORTHO05D007725 1.2e-96 357.8 295 60.7
MCO09G443 Micromonas commoda HOM05D001960 ORTHO05D007725 3.1e-89 333.2 383 44.9
HPP92_022944 Vanilla planifolia HOM05D001960 ORTHO05D007725 9.1e-81 305.1 209 69.9
CBR_g40650 Chara braunii HOM05D001960 ORTHO05D007725 4.7e-77 292.7 329 45.9
Migut.K01334 Erythranthe guttata HOM05D001960 ORTHO05D007725 7.5e-75 285.4 194 71.6
Cre02.g096400 Chlamydomonas reinhardtii HOM05D001960 ORTHO05D007725 2.4e-73 280.4 580 33.1
SHI22231 Sapria himalayana HOM05D001960 ORTHO05D007725 2.5e-70 270.4 250 55.6
Cfa026330 Carpinus fangiana HOM05D001960 ORTHO05D007725 3.4e-51 206.8 463 32.2
Dinv34987 Davidia involucrata HOM05D001960 ORTHO05D007725 9.3e-41 172.2 111 73.0
AUR62031616 Chenopodium quinoa HOM05D000372 ORTHO05D002769 4.6e-40 169.9 82 97.6
Hma1.2p1_1232F.1_g268870 Hydrangea macrophylla HOM05D001960 ORTHO05D014729 5.6e-38 162.9 110 70.9
Actinidia23575 Actinidia chinensis HOM05D001960 ORTHO05D007725 2.1e-37 161.0 112 64.3
Dinv06509 Davidia involucrata HOM05D001960 ORTHO05D014729 3.3e-30 137.1 84 79.8
C07p16020 Brassica napus HOM05D001960 ORTHO05D014930 4.0e-20 103.6 96 55.2
C04p14730 Brassica napus HOM05D001960 ORTHO05D014930 1.2e-19 102.1 69 68.1
BolC3t20150H Brassica oleracea HOM05D001960 ORTHO05D014930 1.5e-19 101.7 69 68.1
BraA05t21956Z Brassica rapa HOM05D001960 ORTHO05D042754 1.5e-19 101.7 92 55.4
BcaC02g11495 Brassica carinata HOM05D001960 ORTHO05D014930 2.0e-19 101.3 68 69.1
A01p26160 Brassica napus HOM05D001960 ORTHO05D014930 2.0e-19 101.3 69 68.1
C07p16060 Brassica napus HOM05D001960 ORTHO05D021151 2.0e-19 101.3 69 68.1
BraA02t06070Z Brassica rapa HOM05D001960 ORTHO05D014930 2.0e-19 101.3 69 68.1
A05p31150 Brassica napus HOM05D001960 ORTHO05D033473 3.4e-19 100.5 69 69.6
BolC5t33816H Brassica oleracea HOM05D001960 ORTHO05D014930 3.4e-19 100.5 69 66.7
A05p31140 Brassica napus HOM05D001960 ORTHO05D042754 4.5e-19 100.1 95 54.7
BcaC05g28941 Brassica carinata HOM05D001960 ORTHO05D014930 5.8e-19 99.8 68 67.6
CDE05G0334 Ceratophyllum demersum HOM05D000115 ORTHO05D000645 1.0e-18 99.0 61 72.1
HPP92_017638 Vanilla planifolia HOM05D003031 ORTHO05D003371 9.3e-17 92.4 53 73.6
HPP92_003669 Vanilla planifolia HOM05D001960 ORTHO05D007725 1.9e-14 84.7 69 63.8
Actinidia27488 Actinidia chinensis HOM05D001960 ORTHO05D058277 4.5e-11 73.6 60 65.0
Medtr5g075800 Medicago truncatula HOM05D001960 ORTHO05D258834 4.6e-08 63.5 85 44.7
GSVIVG01021633001 Vitis vinifera HOM05D001960 ORTHO05D439898 5.1e-07 60.1 52 53.8
Dinv25076 Davidia involucrata HOM05D001960 ORTHO05D033473 3.3e-06 57.4 45 62.2


User provided reference genes

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