Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62031623 Chenopodium quinoa HOM05D004684 ORTHO05D006904 0.0e+00 1093.6 550 100.0
AUR62015690 Chenopodium quinoa HOM05D004684 ORTHO05D006904 2.2e-310 1068.1 550 97.3
Ah.04g153790 Amaranthus hybridus HOM05D004684 ORTHO05D006904 2.0e-287 991.9 559 88.4
Sc19g0005610 Simmondsia chinensis HOM05D004684 ORTHO05D006904 1.3e-265 919.5 550 83.5
Thecc.04G266300 Theobroma cacao HOM05D004684 ORTHO05D006904 3.0e-259 898.3 550 80.5
EL10Ac3g06680 Beta vulgaris HOM05D004684 ORTHO05D006904 1.9e-258 895.6 596 77.5
CANSAT78G0903 Cannabis sativa HOM05D004684 ORTHO05D006904 1.6e-257 892.5 551 79.1
Hund24872 Selenicereus undatus HOM05D004684 ORTHO05D006904 2.1e-257 892.1 666 70.6
Gohir.D09G232200 Gossypium hirsutum HOM05D004684 ORTHO05D006904 4.8e-257 891.0 550 79.5
Gohir.A09G231100 Gossypium hirsutum HOM05D004684 ORTHO05D006904 6.2e-257 890.6 550 79.5
CiPaw.01G176700 Carya illinoinensis HOM05D004684 ORTHO05D006904 1.1e-256 889.8 550 79.3
Manes.03G157750 Manihot esculenta HOM05D004684 ORTHO05D006904 4.0e-256 887.9 551 78.9
CSS0041578 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 1.5e-255 885.9 550 79.3
Duzib212G0777 Durio zibethinus HOM05D004684 ORTHO05D006904 2.6e-255 885.2 550 79.6
MD16G1228500 Malus domestica HOM05D004684 ORTHO05D006904 3.4e-255 884.8 556 79.0
CSS0049189 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 1.3e-254 882.9 550 78.9
Gorai.006G255000 Gossypium raimondii HOM05D004684 ORTHO05D006904 3.8e-254 881.3 566 77.2
QL06p021563 Quercus lobata HOM05D004684 ORTHO05D006904 8.4e-254 880.2 569 77.2
Rhsim04G0170900 Rhododendron simsii HOM05D004684 ORTHO05D006904 1.4e-253 879.4 550 78.4
Solyc09g090840.3 Solanum lycopersicum HOM05D004684 ORTHO05D006904 3.2e-253 878.2 574 76.5
Cpa.g.sc59.16 Carica papaya HOM05D004684 ORTHO05D006904 1.2e-252 876.3 562 77.4
Prupe.1G050600 Prunus persica HOM05D004684 ORTHO05D006904 1.6e-252 875.9 555 78.9
TWI09G1097 Tripterygium wilfordii HOM05D004684 ORTHO05D006904 8.7e-251 870.2 550 77.5
arahy.Tifrunner.gnm1.ann1.14QJGF Arachis hypogaea HOM05D004684 ORTHO05D006904 2.5e-250 868.6 550 76.5
Cfa014797 Carpinus fangiana HOM05D004684 ORTHO05D006904 4.3e-250 867.8 595 73.3
arahy.Tifrunner.gnm1.ann1.1TG9FP Arachis hypogaea HOM05D004684 ORTHO05D006904 6.2e-249 864.0 550 76.0
Glyma.08G047100 Glycine max HOM05D004684 ORTHO05D006904 1.1e-248 863.2 550 75.6
Sopen09g033800 Solanum pennellii HOM05D004684 ORTHO05D006904 1.1e-248 863.2 598 73.2
Haze_11481 Corylus avellana HOM05D004684 ORTHO05D006904 4.0e-248 861.3 579 74.3
vmacro08564 Vaccinium macrocarpon HOM05D004684 ORTHO05D006904 4.0e-248 861.3 534 79.0
RcHm_v2.0_Chr7g0203561 Rosa chinensis HOM05D004684 ORTHO05D006904 1.2e-247 859.8 556 75.9
Migut.G00560 Erythranthe guttata HOM05D004684 ORTHO05D006904 2.0e-247 859.0 552 77.0
HanXRQChr01g0023061 Helianthus annuus HOM05D004684 ORTHO05D006904 2.0e-247 859.0 547 77.1
VMungo0251G0467 Vigna mungo HOM05D004684 ORTHO05D006904 2.0e-247 859.0 551 76.0
Glyma.05G240000 Glycine max HOM05D004684 ORTHO05D006904 6.5e-246 854.0 550 75.1
PGR031G2768 Punica granatum HOM05D004684 ORTHO05D006904 8.4e-246 853.6 550 77.6
Phvul.002G322100 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 1.4e-245 852.8 551 75.3
Sed0004125 Sechium edule HOM05D004684 ORTHO05D006904 1.4e-245 852.8 571 74.4
Carub.0003s2695 Capsella rubella HOM05D004684 ORTHO05D006904 3.2e-245 851.7 551 76.0
Ciclev10004652m.g Citrus clementina HOM05D004684 ORTHO05D006904 5.5e-245 850.9 566 74.9
PSO384G0234 Papaver somniferum HOM05D004684 ORTHO05D006904 1.2e-244 849.7 555 74.6
Potri.008G172700 Populus trichocarpa HOM05D004684 ORTHO05D006904 1.2e-244 849.7 555 75.5
FvH4_4g05030 Fragaria vesca HOM05D004684 ORTHO05D006904 6.0e-244 847.4 577 72.6
Lj4g0011200 Lotus japonicus HOM05D004684 ORTHO05D006904 6.7e-243 844.0 550 75.5
CARHR100400 Cardamine hirsuta HOM05D004684 ORTHO05D006904 3.3e-242 841.6 549 76.0
ECA248G0897 Erigeron canadensis HOM05D004684 ORTHO05D006904 4.3e-242 841.3 547 76.6
Lalb_Chr09g0330801 Lupinus albus HOM05D004684 ORTHO05D006904 4.3e-242 841.3 556 73.4
AT1G48520 Arabidopsis thaliana HOM05D004684 ORTHO05D006904 7.4e-242 840.5 551 75.5
Lj4g0013294 Lotus japonicus HOM05D004684 ORTHO05D006904 1.6e-241 839.3 551 76.2
Sabra10G0042300 Salix brachista HOM05D004684 ORTHO05D006904 6.3e-241 837.4 596 71.1
AL3G43250 Arabidopsis lyrata HOM05D004684 ORTHO05D006904 1.4e-240 836.3 551 75.5
Ca_04899_v3 Cicer arietinum L. HOM05D004684 ORTHO05D006904 2.4e-240 835.5 530 77.4
TPR.G38256 Trifolium pratense HOM05D004684 ORTHO05D006904 9.0e-240 833.6 550 73.8
MELO3C023021.2 Cucumis melo HOM05D004684 ORTHO05D006904 5.9e-239 830.9 562 74.4
THA.LOC104804573 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 7.6e-239 830.5 521 77.9
Medtr5g055940 Medicago truncatula HOM05D004684 ORTHO05D006904 1.0e-238 830.1 547 74.6
THA.LOC104808741 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 5.0e-238 827.8 553 74.7
Eucgr.G01176 Eucalyptus grandis HOM05D004684 ORTHO05D006904 6.5e-238 827.4 550 74.9
Thhalv10002467m.g Eutrema salsugineum HOM05D004684 ORTHO05D006904 6.5e-238 827.4 555 74.1
Nitab4.5_0005154g0090 Nicotiana tabacum HOM05D004684 ORTHO05D006904 8.5e-238 827.0 588 71.3
Sp3g22110 Schrenkiella parvula HOM05D004684 ORTHO05D006904 1.4e-237 826.2 552 74.5
Aqoxy5G00132 Aquilegia oxysepala HOM05D004684 ORTHO05D006904 1.9e-237 825.9 554 73.1
Nn1g02992 Nelumbo nucifera HOM05D004684 ORTHO05D006904 9.3e-237 823.5 491 81.1
Eucgr.H02859 Eucalyptus grandis HOM05D004684 ORTHO05D006904 3.3e-234 815.1 550 74.2
BcaC01g03327 Brassica carinata HOM05D004684 ORTHO05D006904 6.3e-233 810.8 555 72.4
MBI07_g08913_MAGBIO Magnolia biondii HOM05D004684 ORTHO05D006904 2.0e-231 805.8 523 75.3
A03p43590 Brassica napus HOM05D004684 ORTHO05D006904 1.0e-230 803.5 554 72.7
ClCG06G007290 Citrullus lanatus HOM05D004684 ORTHO05D006904 2.9e-230 802.0 572 71.2
BraA03t13496Z Brassica rapa HOM05D004684 ORTHO05D006904 5.0e-230 801.2 560 72.0
Os11g0544800 Oryza sativa ssp. japonica HOM05D004684 ORTHO05D006904 2.5e-229 798.9 482 79.9
Zm00001eb197630 Zea mays HOM05D004684 ORTHO05D006904 1.6e-228 796.2 503 76.9
C03p53620 Brassica napus HOM05D004684 ORTHO05D006904 2.7e-228 795.4 558 71.5
BolC3t17622H Brassica oleracea HOM05D004684 ORTHO05D006904 1.4e-227 793.1 564 70.7
ATR0787G095 Amborella trichopoda HOM05D004684 ORTHO05D006904 5.1e-227 791.2 537 73.6
Aa31LG8G11000 Aethionema arabicum HOM05D004684 ORTHO05D006904 6.7e-227 790.8 553 72.9
DCAR_002298 Daucus carota HOM05D004684 ORTHO05D006904 7.4e-226 787.3 462 82.0
PGSC0003DMG400001555 Solanum tuberosum HOM05D004684 ORTHO05D006904 5.3e-224 781.2 539 73.1
FAN22G2229 Fragaria x ananassa HOM05D004684 ORTHO05D006904 7.7e-223 777.3 609 66.0
Dinv29794 Davidia involucrata HOM05D004684 ORTHO05D006904 1.1e-221 773.5 504 76.8
TAR636G2335 Trochodendron aralioides HOM05D002740 ORTHO05D003126 3.6e-220 768.5 522 73.9
Lsat_1_v5_gn_1_75460 Lactuca sativa HOM05D004684 ORTHO05D006904 2.3e-219 765.8 562 70.6
Potri.010G064700 Populus trichocarpa HOM05D004684 ORTHO05D006904 2.6e-215 752.3 533 72.2
Nitab4.5_0001041g0120 Nicotiana tabacum HOM05D004684 ORTHO05D006904 5.9e-215 751.1 588 66.5
Duzib151G0232 Durio zibethinus HOM05D004684 ORTHO05D006904 2.2e-214 749.2 550 69.1
CAN.G812.19 Capsicum annuum HOM05D004684 ORTHO05D006904 8.5e-214 747.3 484 76.4
PSO832G1147 Papaver somniferum HOM05D004684 ORTHO05D006904 2.3e-211 739.2 493 72.8
SalBow2G2567 Salvia bowleyana HOM05D004684 ORTHO05D006904 8.8e-211 737.3 548 69.5
Lalb_Chr05g0222141 Lupinus albus HOM05D004684 ORTHO05D006904 5.7e-210 734.6 443 79.0
HPP92_005111 Vanilla planifolia HOM05D004684 ORTHO05D006904 5.7e-210 734.6 492 74.4
Mapoly0107s0036 Marchantia polymorpha HOM05D004684 ORTHO05D006904 2.2e-206 722.6 485 71.1
Pp3c21_8670 Physcomitrium patens HOM05D004684 ORTHO05D006904 3.4e-202 708.8 552 64.5
Nitab4.5_0022682g0010 Nicotiana tabacum HOM05D004684 ORTHO05D006904 5.7e-202 708.0 486 73.0
CDE02G2675 Ceratophyllum demersum HOM05D004684 ORTHO05D006904 1.1e-200 703.7 440 76.8
Peaxi162Scf00531g00034 Petunia axillaris HOM05D004684 ORTHO05D006904 5.0e-198 694.9 557 65.4
unitig_748.g8291 Utricularia gibba HOM05D004684 ORTHO05D006904 2.4e-192 676.0 576 62.5
CBR_g20386 Chara braunii HOM05D004684 ORTHO05D006904 9.5e-189 664.1 486 64.4
SMO147G0416 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 3.0e-187 659.1 486 66.5
SEGI_18338 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 2.2e-185 652.9 456 69.3
SMO273G0058 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 7.0e-184 647.9 501 63.7
MD13G1223700 Malus domestica HOM05D004684 ORTHO05D006904 1.9e-181 639.8 469 68.7
Actinidia20844 Actinidia chinensis HOM05D004684 ORTHO05D006904 3.3e-181 639.0 514 66.0
AagrBONN_evm.TU.Sc2ySwM_368.913 Anthoceros agrestis HOM05D004684 ORTHO05D006904 1.8e-179 633.3 423 72.8
Psat2g106400 Pisum sativum HOM05D004684 ORTHO05D006904 9.9e-170 600.9 550 58.4
CsaV3_2G012390 Cucumis sativus L. HOM05D004684 ORTHO05D006904 1.6e-164 583.6 340 84.7
QL02p071976 Quercus lobata HOM05D004684 ORTHO05D006904 1.1e-163 580.9 455 66.8
MCO15G005 Micromonas commoda HOM05D004684 ORTHO05D006904 1.0e-158 564.3 486 58.2
Lj3A639G13 Lonicera japonica HOM05D004684 ORTHO05D006904 3.3e-157 559.3 372 77.2
PRCOL_00005018 Prasinoderma coloniale HOM05D004684 ORTHO05D006904 7.3e-157 558.1 490 57.6
RcHm_v2.0_Chr4g0395911 Rosa chinensis HOM05D004684 ORTHO05D006904 1.8e-147 526.9 322 80.4
BcaB03g14590 Brassica carinata HOM05D004684 ORTHO05D006904 4.9e-145 518.8 322 79.8
GSVIVG01027938001 Vitis vinifera HOM05D004684 ORTHO05D006904 7.1e-136 488.4 293 84.0
Pp3s32_289 Physcomitrium patens HOM05D004684 ORTHO05D006904 2.3e-134 483.4 481 47.4
Oeu059392.1 Olea europaea HOM05D004684 ORTHO05D006904 1.3e-116 424.5 271 78.6
Rhsim02G0163300 Rhododendron simsii HOM05D004684 ORTHO05D006904 5.9e-114 415.6 443 52.6
Psat2g046800 Pisum sativum HOM05D004684 ORTHO05D006904 4.8e-108 396.0 259 74.1
FAN12G2037 Fragaria x ananassa HOM05D004684 ORTHO05D006904 1.7e-105 387.5 386 56.7
MELO3C023047.2 Cucumis melo HOM05D004684 ORTHO05D006904 2.8e-100 370.2 228 78.9
Cc03_g06440 Coffea canephora HOM05D004684 ORTHO05D006904 2.4e-91 340.5 205 81.0
COL.COLO4_15980 Corchorus olitorius HOM05D004684 ORTHO05D006904 8.0e-87 325.5 210 73.8
RcHm_v2.0_Chr4g0395921 Rosa chinensis HOM05D004684 ORTHO05D006904 5.9e-82 309.3 210 70.0
Cc01_g12830 Coffea canephora HOM05D004684 ORTHO05D006904 1.9e-80 304.3 188 78.2
Lj3C639G0 Lonicera japonica HOM05D004684 ORTHO05D006904 7.2e-80 302.4 210 69.5
CsaV3_2G012380 Cucumis sativus L. HOM05D004684 ORTHO05D006904 1.3e-76 291.6 211 66.8
MCO02G423 Micromonas commoda HOM05D004684 ORTHO05D006904 1.6e-74 284.6 472 36.4
SEGI_18835 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 4.9e-60 236.5 134 76.9
Psat2g046760 Pisum sativum HOM05D004684 ORTHO05D006904 1.6e-55 221.5 139 78.4
FvH4_4g04730 Fragaria vesca HOM05D004684 ORTHO05D006904 1.1e-54 218.8 248 50.8
Cfa025385 Carpinus fangiana HOM05D004684 ORTHO05D123888 3.5e-50 203.8 444 31.3
BcaB06g26612 Brassica carinata HOM05D004684 ORTHO05D006904 4.6e-50 203.4 187 56.1
Psat0s5182g0040 Pisum sativum HOM05D004684 ORTHO05D006904 7.3e-40 169.5 102 78.4
Psat3g087000 Pisum sativum HOM05D004684 ORTHO05D006904 7.3e-40 169.5 102 78.4
Cre14.g627488 Chlamydomonas reinhardtii HOM05D004684 ORTHO05D006904 6.2e-39 166.4 361 32.4
Phvul.002G091800 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 5.3e-38 163.3 134 61.2
FAN12G0780 Fragaria x ananassa HOM05D004684 ORTHO05D006904 1.7e-36 158.3 146 59.6
Oeu059393.1 Olea europaea HOM05D004684 ORTHO05D029065 1.1e-32 145.6 114 68.4
CAN.G154.7 Capsicum annuum HOM05D004684 ORTHO05D010951 4.8e-31 140.2 123 60.2
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 6.0e-26 123.2 64 96.9
SEGI_09601 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 1.0e-25 122.5 113 56.6
C07p12070 Brassica napus HOM05D004684 ORTHO05D027888 5.6e-24 116.7 150 49.3
GSVIVG01027937001 Vitis vinifera HOM05D004684 ORTHO05D029065 1.1e-22 112.5 66 84.8
BraA07t28588Z Brassica rapa HOM05D004684 ORTHO05D027888 3.8e-20 104.0 140 45.7
DCAR_018323 Daucus carota HOM05D004684 ORTHO05D000311 6.5e-20 103.2 86 58.1
Cc03_g06450 Coffea canephora HOM05D004684 ORTHO05D029065 9.3e-19 99.4 68 70.6
MD13G1223600 Malus domestica HOM05D004684 ORTHO05D029065 2.1e-18 98.2 57 84.2
Cc03_g06430 Coffea canephora HOM05D004684 ORTHO05D006904 4.6e-18 97.1 52 88.5
Pp3c22_13460 Physcomitrium patens HOM05D004684 ORTHO05D314634 7.9e-18 96.3 119 45.4
BcaC01g03330 Brassica carinata HOM05D004684 ORTHO05D006904 1.8e-17 95.1 120 44.2
A07p08010 Brassica napus HOM05D004684 ORTHO05D027888 9.6e-16 89.4 105 51.4
arahy.Tifrunner.gnm1.ann1.M032NN Arachis hypogaea HOM05D003831 ORTHO05D004440 7.6e-13 79.7 58 70.7
Phvul.009G129001 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 8.4e-12 76.3 87 46.0
BcaB06g27371 Brassica carinata HOM05D004684 ORTHO05D006904 2.7e-10 71.2 61 57.4
CAN.G1407.1 Capsicum annuum HOM05D004684 ORTHO05D016153 1.3e-09 68.9 46 71.7
arahy.Tifrunner.gnm1.ann1.FY8GKD Arachis hypogaea HOM05D003831 ORTHO05D004440 1.1e-08 65.9 56 55.4
BolC7t41675H Brassica oleracea HOM05D004684 ORTHO05D027888 4.3e-08 63.9 72 50.0
BcaC06g35681 Brassica carinata HOM05D004684 ORTHO05D008836 6.3e-07 60.1 51 54.9
arahy.Tifrunner.gnm1.ann1.PGR81E Arachis hypogaea HOM05D004684 ORTHO05D082538 2.4e-06 58.2 43 62.8


User provided reference genes

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