Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 0.0e+00 1123.2 578 100.0
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 6.2e-300 1033.5 584 93.0
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 1.3e-284 982.6 568 88.7
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 6.9e-283 976.9 568 88.7
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 4.4e-269 931.0 557 86.2
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 3.7e-260 901.4 578 80.8
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 8.0e-255 883.6 568 79.0
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 2.3e-254 882.1 550 81.6
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 6.8e-254 880.6 526 84.6
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 2.0e-253 879.0 563 78.2
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 2.6e-253 878.6 552 80.4
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 1.3e-252 876.3 561 80.2
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 1.3e-252 876.3 539 81.8
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 3.7e-252 874.8 564 78.9
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 1.1e-251 873.2 575 77.6
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 3.1e-251 871.7 567 78.5
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 7.0e-251 870.5 561 78.3
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 9.2e-251 870.2 558 80.1
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 9.2e-251 870.2 557 79.0
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 1.6e-250 869.4 561 77.7
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 2.0e-250 869.0 571 77.2
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 5.9e-250 867.5 579 78.1
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 7.7e-250 867.1 558 79.9
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 1.3e-249 866.3 532 81.6
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 1.3e-249 866.3 558 79.7
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 1.3e-249 866.3 572 76.7
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 1.7e-249 865.9 572 77.8
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 1.7e-249 865.9 555 79.3
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 3.8e-249 864.8 571 78.5
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 5.0e-249 864.4 562 79.0
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 5.0e-249 864.4 527 82.2
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 1.1e-248 863.2 537 80.1
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 1.1e-248 863.2 521 82.5
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 1.5e-248 862.8 535 81.3
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 1.9e-248 862.4 559 79.1
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 2.5e-248 862.1 521 82.5
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 5.6e-248 860.9 567 76.9
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 7.3e-248 860.5 531 81.4
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 9.5e-248 860.1 575 77.2
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 1.2e-247 859.8 562 78.1
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 1.2e-247 859.8 510 83.1
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 1.6e-247 859.4 554 79.6
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 2.1e-247 859.0 564 78.0
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 3.6e-247 858.2 566 77.6
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 3.6e-247 858.2 568 76.9
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 1.8e-246 855.9 546 79.1
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 1.8e-246 855.9 546 79.1
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 5.2e-246 854.4 546 78.9
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 5.2e-246 854.4 546 78.9
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 5.2e-246 854.4 546 78.9
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 5.2e-246 854.4 547 79.3
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 5.2e-246 854.4 574 77.0
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 6.8e-246 854.0 544 79.6
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 8.9e-246 853.6 531 80.8
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 1.5e-245 852.8 561 77.0
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 3.4e-245 851.7 576 75.9
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 3.4e-245 851.7 538 80.1
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 4.4e-245 851.3 549 79.1
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 4.4e-245 851.3 550 78.2
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 9.8e-245 850.1 542 79.5
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 9.8e-245 850.1 546 78.8
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 1.7e-244 849.4 574 76.1
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 2.2e-244 849.0 538 79.9
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 3.7e-244 848.2 554 78.2
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 3.7e-244 848.2 542 79.2
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 3.7e-244 848.2 566 76.7
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 4.9e-244 847.8 558 77.6
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 4.9e-244 847.8 521 82.0
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 8.3e-244 847.0 550 77.6
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 1.8e-243 845.9 532 80.5
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 1.8e-243 845.9 566 76.3
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 5.4e-243 844.3 562 76.5
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 7.0e-243 844.0 564 75.4
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 1.6e-242 842.8 564 77.5
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 5.9e-242 840.9 520 80.6
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 3.0e-241 838.6 544 77.9
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 7.3e-240 833.9 527 79.3
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.6e-239 831.6 574 73.3
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 3.6e-239 831.6 561 75.2
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 4.7e-239 831.2 571 74.4
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 1.4e-238 829.7 574 74.4
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 1.8e-238 829.3 531 78.7
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 4.0e-238 828.2 568 74.1
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 1.2e-237 826.6 537 77.5
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.2e-237 826.6 556 75.2
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 2.0e-237 825.9 580 73.3
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 1.3e-236 823.2 566 74.0
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 4.9e-236 821.2 528 77.5
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 4.9e-236 821.2 575 73.0
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 2.0e-234 815.8 566 73.5
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 1.7e-233 812.8 552 75.4
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 2.3e-233 812.4 563 74.8
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.0e-233 812.0 576 72.6
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.1e-232 810.1 576 72.6
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 1.5e-232 809.7 515 79.2
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 6.8e-230 800.8 550 75.1
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 1.3e-228 796.6 563 73.0
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 6.0e-226 787.7 469 84.6
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 7.8e-226 787.3 561 72.7
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 1.1e-224 783.5 544 75.9
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 1.5e-224 783.1 558 72.0
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 1.2e-221 773.5 465 83.2
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 7.1e-219 764.2 482 79.9
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 1.3e-217 760.0 518 75.1
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 1.4e-214 750.0 560 67.9
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 6.4e-212 741.1 510 71.6
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 2.5e-208 729.2 485 76.7
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 7.3e-208 727.6 571 65.0
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 1.2e-205 720.3 559 64.8
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 3.2e-203 712.2 423 85.3
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 2.7e-194 682.6 446 75.3
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 4.6e-194 681.8 544 67.6
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 6.0e-194 681.4 444 75.2
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 2.3e-193 679.5 547 66.4
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 3.8e-188 662.1 563 65.4
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 8.4e-188 661.0 523 63.7
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 1.6e-183 646.7 584 61.5
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 4.5e-181 638.6 565 58.1
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 1.3e-175 620.5 460 68.0
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 4.8e-175 618.6 531 64.4
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 4.8e-175 618.6 520 61.9
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 1.9e-171 606.7 545 56.3
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 6.7e-161 571.6 522 60.5
Lj7C259T3 Lonicera japonica HOM05D001920 ORTHO05D005408 2.9e-156 556.2 318 86.8
Lj7C264G4 Lonicera japonica HOM05D001920 ORTHO05D005408 3.3e-152 542.7 498 59.8
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 6.3e-151 538.5 359 78.0
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 5.9e-149 531.9 456 59.0
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 2.2e-148 530.0 504 56.3
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 2.2e-148 530.0 504 55.4
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 8.5e-148 528.1 504 56.0
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.7e-146 523.1 503 54.9
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.8e-126 457.2 495 50.7
AagrBONN_evm.TU.Sc2ySwM_228.4615 Anthoceros agrestis HOM05D001920 ORTHO05D005408 1.0e-124 451.4 331 66.8
PRCOL_00001520 Prasinoderma coloniale HOM05D001920 ORTHO05D005408 1.2e-117 427.9 500 46.2
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 2.4e-110 403.7 614 44.1
Cre10.g439650 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D005408 1.8e-97 360.9 546 38.6
FAN17G1736 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.2e-95 354.0 422 47.9
FAN12G2252 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.1e-84 316.2 340 52.1
MCO04G241 Micromonas commoda HOM05D001920 ORTHO05D005408 4.2e-78 296.6 433 38.3
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 2.1e-69 267.7 157 86.0
CDE05G0360 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 1.1e-67 261.9 183 69.4
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 7.2e-62 242.7 551 35.9
CDE05G1717 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 8.8e-60 235.7 250 51.2
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.4e-54 218.4 395 38.2
SEGI_36171 Sequoiadendron giganteum HOM05D001920 ORTHO05D000001 5.0e-47 193.4 129 75.2
arahy.Tifrunner.gnm1.ann1.NPWH83 Arachis hypogaea HOM05D001920 ORTHO05D005408 4.8e-42 176.8 103 81.6
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 1.1e-41 175.6 503 32.4
MSTRG.25967 Avicennia marina HOM05D001920 ORTHO05D005408 5.3e-41 173.3 106 86.8
Lj7A264G15 Lonicera japonica HOM05D001920 ORTHO05D005408 1.9e-38 164.9 117 75.2
Eucgr.L03492 Eucalyptus grandis HOM05D001920 ORTHO05D005408 8.2e-34 149.4 138 58.7
BcaNung02635 Brassica carinata HOM05D001920 ORTHO05D005408 2.7e-29 134.4 80 80.0
Hma1.2p1_0196F.1_g084820 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 1.4e-28 132.1 96 72.9
TPR.G36194 Trifolium pratense HOM05D001920 ORTHO05D005408 1.4e-28 132.1 94 76.6
Zm00001eb014540 Zea mays HOM05D000282 ORTHO05D000272 3.0e-20 104.4 76 65.8
BcaC05g26027 Brassica carinata HOM05D001920 ORTHO05D024365 1.7e-18 98.6 80 67.5
TPR.G748 Trifolium pratense HOM05D001920 ORTHO05D005408 2.2e-18 98.2 65 73.8
TPR.G36118 Trifolium pratense HOM05D001920 ORTHO05D005408 7.0e-17 93.2 54 87.0
SGA_v2.0_scaffold26G11215 Striga asiatica HOM05D001920 ORTHO05D024365 1.7e-15 88.6 50 86.0
MBI17_g36954_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D012920 2.9e-15 87.8 56 78.6
TPR.G14973 Trifolium pratense HOM05D001920 ORTHO05D005408 2.8e-13 81.3 88 40.9
C05p19930 Brassica napus HOM05D001920 ORTHO05D024365 1.8e-12 78.6 53 73.6
C06p01410 Brassica napus HOM05D001920 ORTHO05D024365 5.2e-12 77.0 98 51.0
ECA232G0588 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.2e-11 75.9 49 79.6
AUR62005649 Chenopodium quinoa HOM05D002793 ORTHO05D002965 1.1e-09 69.3 47 83.0
ATR0009G024 Amborella trichopoda HOM05D001920 ORTHO05D005408 1.4e-09 68.9 76 52.6
BolC5t30691H Brassica oleracea HOM05D001920 ORTHO05D024365 1.4e-09 68.9 43 76.7
ATR0009G028 Amborella trichopoda HOM05D001920 ORTHO05D005408 2.5e-06 58.2 46 54.3
Lj7A259T19 Lonicera japonica HOM05D001920 ORTHO05D235283 5.6e-06 57.0 144 34.7


User provided reference genes

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