Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62031036 Chenopodium quinoa HOM05D006272 ORTHO05D007989 1.7e-131 472.6 234 100.0
AUR62008277 Chenopodium quinoa HOM05D006272 ORTHO05D007989 2.2e-110 402.5 206 95.1
EL10Ac5g10820 Beta vulgaris HOM05D006272 ORTHO05D007989 2.5e-90 335.9 208 79.8
Ah.11g046120 Amaranthus hybridus HOM05D006272 ORTHO05D007989 5.8e-87 324.7 210 79.0
Sc12g0005560 Simmondsia chinensis HOM05D006272 ORTHO05D007989 1.7e-78 296.6 210 73.3
Atru.chr9.2416 Acer truncatum HOM05D006272 ORTHO05D007989 4.8e-73 278.5 223 64.1
Gohir.A03G017300 Gossypium hirsutum HOM05D006272 ORTHO05D007989 6.2e-73 278.1 218 66.1
Gorai.003G157900 Gossypium raimondii HOM05D006272 ORTHO05D007989 6.2e-73 278.1 235 63.0
Gohir.D03G150700 Gossypium hirsutum HOM05D006272 ORTHO05D007989 8.1e-73 277.7 218 67.0
Haze_07447 Corylus avellana HOM05D006272 ORTHO05D007989 1.8e-72 276.6 209 65.1
HanXRQChr16g0503601 Helianthus annuus HOM05D006272 ORTHO05D007989 4.0e-72 275.4 209 64.6
Actinidia19083 Actinidia chinensis HOM05D006272 ORTHO05D007989 6.9e-72 274.6 212 64.6
MD06G1180000 Malus domestica HOM05D006272 ORTHO05D007989 9.0e-72 274.2 212 66.5
Oeu041583.1 Olea europaea HOM05D006272 ORTHO05D007989 1.2e-71 273.9 211 64.5
Prupe.5G178100 Prunus persica HOM05D006272 ORTHO05D007989 2.0e-71 273.1 213 64.8
Manes.14G069600 Manihot esculenta HOM05D006272 ORTHO05D007989 4.5e-71 271.9 170 75.9
Migut.D01790 Erythranthe guttata HOM05D006272 ORTHO05D007989 5.8e-71 271.6 211 63.5
Lsat_1_v5_gn_4_72700 Lactuca sativa HOM05D006272 ORTHO05D007989 5.8e-71 271.6 200 66.0
QL10p013391 Quercus lobata HOM05D006272 ORTHO05D007989 7.6e-71 271.2 215 63.7
Hund09410 Selenicereus undatus HOM05D006272 ORTHO05D007989 1.3e-70 270.4 197 71.6
MD14G1185400 Malus domestica HOM05D006272 ORTHO05D007989 3.8e-70 268.9 208 66.3
MSTRG.4383 Avicennia marina HOM05D006272 ORTHO05D007989 6.4e-70 268.1 211 62.6
FvH4_5g16490 Fragaria vesca HOM05D006272 ORTHO05D007989 6.4e-70 268.1 212 66.0
CiPaw.12G023800 Carya illinoinensis HOM05D006272 ORTHO05D007989 1.1e-69 267.3 214 64.0
FAN04G2131 Fragaria x ananassa HOM05D006272 ORTHO05D007989 1.4e-69 266.9 178 73.0
FAN13G1305 Fragaria x ananassa HOM05D006272 ORTHO05D007989 1.4e-69 266.9 178 73.0
MD06G1180300 Malus domestica HOM05D006272 ORTHO05D007989 1.4e-69 266.9 220 64.1
vmacro16592 Vaccinium macrocarpon HOM05D006272 ORTHO05D007989 2.4e-69 266.2 214 64.5
RcHm_v2.0_Chr7g0179601 Rosa chinensis HOM05D006272 ORTHO05D007989 3.2e-69 265.8 210 67.6
Cc04_g13100 Coffea canephora HOM05D006272 ORTHO05D007989 5.5e-69 265.0 174 71.8
Duzib205G0574 Durio zibethinus HOM05D006272 ORTHO05D007989 5.5e-69 265.0 215 64.7
Rhsim12G0162200 Rhododendron simsii HOM05D006272 ORTHO05D007989 5.5e-69 265.0 209 64.1
CAN.G2099.3 Capsicum annuum HOM05D006272 ORTHO05D007989 7.1e-69 264.6 214 63.1
ECA232G4277 Erigeron canadensis HOM05D006272 ORTHO05D007989 2.7e-68 262.7 185 67.0
Lj5A121G99 Lonicera japonica HOM05D006272 ORTHO05D007989 2.7e-68 262.7 205 65.4
TAR622G0996 Trochodendron aralioides HOM05D006272 ORTHO05D007989 3.5e-68 262.3 208 64.4
Potri.015G072000 Populus trichocarpa HOM05D006272 ORTHO05D007989 1.0e-67 260.8 211 63.0
COL.COLO4_04328 Corchorus olitorius HOM05D006272 ORTHO05D007989 1.3e-67 260.4 203 67.0
Nitab4.5_0006432g0010 Nicotiana tabacum HOM05D006272 ORTHO05D007989 1.3e-67 260.4 191 68.1
GSVIVG01007814001 Vitis vinifera HOM05D006272 ORTHO05D007989 1.8e-67 260.0 179 72.1
Thecc.03G005700 Theobroma cacao HOM05D006272 ORTHO05D007989 3.0e-67 259.2 221 62.0
Ciclev10022132m.g Citrus clementina HOM05D006272 ORTHO05D007989 3.9e-67 258.8 210 64.8
Eucgr.B00343 Eucalyptus grandis HOM05D006272 ORTHO05D007989 5.1e-67 258.5 208 63.9
CSS0019620 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 6.7e-67 258.1 215 60.9
Cfa019077 Carpinus fangiana HOM05D006272 ORTHO05D007989 1.5e-66 256.9 202 64.4
FAN18G3972 Fragaria x ananassa HOM05D006272 ORTHO05D007989 1.9e-66 256.5 231 60.6
arahy.Tifrunner.gnm1.ann1.I0QXBL Arachis hypogaea HOM05D006272 ORTHO05D007989 2.5e-66 256.1 176 70.5
TPR.G15079 Trifolium pratense HOM05D006272 ORTHO05D007989 7.4e-66 254.6 215 61.4
Sabra15G0096800 Salix brachista HOM05D006272 ORTHO05D007989 1.6e-65 253.4 183 67.8
Solyc03g113990.3 Solanum lycopersicum HOM05D006272 ORTHO05D007989 2.1e-65 253.1 212 62.7
CSS0043549 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 3.7e-65 252.3 215 59.5
Sopen03g033040 Solanum pennellii HOM05D006272 ORTHO05D007989 3.7e-65 252.3 209 63.2
Glyma.06G185200 Glycine max HOM05D006272 ORTHO05D007989 6.2e-65 251.5 179 69.8
PGSC0003DMG400024586 Solanum tuberosum HOM05D006272 ORTHO05D007989 1.8e-64 250.0 212 63.2
BcaB08g35362 Brassica carinata HOM05D006272 ORTHO05D007989 2.4e-64 249.6 208 60.1
CANSAT80G1784 Cannabis sativa HOM05D006272 ORTHO05D007989 3.1e-64 249.2 164 71.3
Nn4g22890 Nelumbo nucifera HOM05D006272 ORTHO05D007524 5.3e-64 248.4 205 58.0
ClCG06G016760 Citrullus lanatus HOM05D006272 ORTHO05D007989 6.9e-64 248.1 205 59.0
Phvul.009G181400 Phaseolus vulgaris HOM05D006272 ORTHO05D007989 6.9e-64 248.1 156 75.0
Ca_16206_v3 Cicer arietinum L. HOM05D006272 ORTHO05D007989 1.2e-63 247.3 169 69.8
Medtr3g078320 Medicago truncatula HOM05D006272 ORTHO05D007989 1.2e-63 247.3 168 70.2
Sed0009129 Sechium edule HOM05D006272 ORTHO05D007989 1.5e-63 246.9 193 61.1
MELO3C017116.2 Cucumis melo HOM05D006272 ORTHO05D007989 2.6e-63 246.1 194 62.4
Thhalv10014644m.g Eutrema salsugineum HOM05D006272 ORTHO05D007989 2.6e-63 246.1 178 66.3
PGR083G1342 Punica granatum HOM05D006272 ORTHO05D007989 2.6e-63 246.1 209 63.2
Glyma.04G179400 Glycine max HOM05D006272 ORTHO05D007989 4.5e-63 245.4 162 71.0
SGA_v2.0_scaffold114G31850 Striga asiatica HOM05D006272 ORTHO05D007989 4.5e-63 245.4 220 59.1
Psat5g113800 Pisum sativum HOM05D006272 ORTHO05D007989 7.6e-63 244.6 162 71.6
Nitab4.5_0001422g0120 Nicotiana tabacum HOM05D006272 ORTHO05D007989 1.0e-62 244.2 198 66.2
BraSC37t46149Z Brassica rapa HOM05D006272 ORTHO05D007989 1.3e-62 243.8 208 59.1
CsaV3_1G001760 Cucumis sativus L. HOM05D006272 ORTHO05D007989 1.3e-62 243.8 168 67.9
VMungo1309G0353 Vigna mungo HOM05D006272 ORTHO05D007989 1.3e-62 243.8 158 72.2
BcaC04g20846 Brassica carinata HOM05D006272 ORTHO05D007989 1.7e-62 243.4 208 59.6
C09p38510 Brassica napus HOM05D006272 ORTHO05D007989 1.7e-62 243.4 208 59.6
BolC9t56708H Brassica oleracea HOM05D006272 ORTHO05D007989 1.7e-62 243.4 208 59.6
A10p08550 Brassica napus HOM05D006272 ORTHO05D007989 3.8e-62 242.3 208 59.1
Lalb_Chr23g0273081 Lupinus albus HOM05D006272 ORTHO05D007989 1.1e-61 240.7 168 69.0
AL8G24090 Arabidopsis lyrata HOM05D006272 ORTHO05D007989 1.4e-61 240.4 201 59.7
THA.LOC104809256 Tarenaya hassleriana HOM05D006272 ORTHO05D007989 1.4e-61 240.4 195 61.5
AT5G50100 Arabidopsis thaliana HOM05D006272 ORTHO05D007989 1.9e-61 240.0 211 58.8
Lj1g0014498 Lotus japonicus HOM05D006272 ORTHO05D007989 1.9e-61 240.0 175 66.9
Aqoxy3G03085 Aquilegia oxysepala HOM05D006272 ORTHO05D007989 2.5e-61 239.6 189 63.5
Aa31LG3G6090 Aethionema arabicum HOM05D006272 ORTHO05D007989 9.3e-61 237.7 160 71.9
Carub.0008s1010 Capsella rubella HOM05D006272 ORTHO05D007989 9.3e-61 237.7 202 58.9
Os04g0668800 Oryza sativa ssp. japonica HOM05D006272 ORTHO05D007989 3.5e-60 235.7 159 69.2
Zm00001eb433220 Zea mays HOM05D006272 ORTHO05D007989 7.9e-60 234.6 149 73.2
Sp6g11960 Schrenkiella parvula HOM05D006272 ORTHO05D007989 3.9e-59 232.3 192 62.5
Aqoxy3G03086 Aquilegia oxysepala HOM05D006272 ORTHO05D007989 5.1e-59 231.9 188 62.8
arahy.Tifrunner.gnm1.ann1.LZB4LR Arachis hypogaea HOM05D006272 ORTHO05D007989 5.1e-59 231.9 163 68.7
PSO063G7353 Papaver somniferum HOM05D006272 ORTHO05D007989 5.1e-59 231.9 177 64.4
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 4.3e-58 228.8 145 73.8
FAN08G1485 Fragaria x ananassa HOM05D006272 ORTHO05D007989 3.7e-57 225.7 224 57.1
Peaxi162Scf00017g02427 Petunia axillaris HOM05D006272 ORTHO05D007989 6.3e-57 224.9 209 56.9
PSO832G1007 Papaver somniferum HOM05D006272 ORTHO05D007989 1.4e-56 223.8 160 65.0
Cpa.g.c38966 Carica papaya HOM05D006272 ORTHO05D007989 1.5e-55 220.3 125 80.0
DCAR_021559 Daucus carota HOM05D006272 ORTHO05D007989 7.6e-55 218.0 151 68.2
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 1.7e-54 216.9 176 61.9
ATR1149G021 Amborella trichopoda HOM05D006272 ORTHO05D007989 7.2e-53 211.5 130 73.8
HPP92_028587 Vanilla planifolia HOM05D006272 ORTHO05D007989 9.3e-53 211.1 134 71.6
TWI15G0925 Tripterygium wilfordii HOM05D006272 ORTHO05D007989 8.7e-51 204.5 175 62.3
Mapoly0071s0065 Marchantia polymorpha HOM05D006272 ORTHO05D007989 1.1e-50 204.1 197 52.8
MBI15_g12943_MAGBIO Magnolia biondii HOM05D006272 ORTHO05D007989 5.7e-50 201.8 162 61.7
CSS0030983 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 8.2e-49 198.0 126 74.6
Pp3c1_15150 Physcomitrium patens HOM05D006272 ORTHO05D007989 3.1e-48 196.1 136 67.6
CBR_g17090 Chara braunii HOM05D006272 ORTHO05D007989 4.5e-47 192.2 155 53.5
SMO134G0173 Selaginella moellendorffii HOM05D006272 ORTHO05D007989 2.2e-41 173.3 111 69.4
Sed0028033 Sechium edule HOM05D006272 ORTHO05D007989 4.8e-41 172.2 137 62.0
Hma1.2p1_1643F.1_g295250 Hydrangea macrophylla HOM05D006272 ORTHO05D007989 5.0e-38 162.2 158 58.9
Hma1.2p1_2351F.1_g320495 Hydrangea macrophylla HOM05D006272 ORTHO05D007989 5.0e-38 162.2 158 58.9
CARHR258530 Cardamine hirsuta HOM05D006272 ORTHO05D007989 6.5e-38 161.8 160 53.1
Dinv09172 Davidia involucrata HOM05D006272 ORTHO05D007989 4.4e-34 149.1 134 58.2
PRCOL_00006774 Prasinoderma coloniale HOM05D006272 ORTHO05D007989 4.8e-33 145.6 122 55.7
AL8G10070 Arabidopsis lyrata HOM05D006272 ORTHO05D007989 6.3e-33 145.2 93 76.3
Cre03.g145587 Chlamydomonas reinhardtii HOM05D006272 ORTHO05D007989 1.8e-32 143.7 156 44.9
SalBow3G0460 Salvia bowleyana HOM05D006272 ORTHO05D007989 4.5e-31 139.0 80 80.0
Gohir.A03G017120 Gossypium hirsutum HOM05D006272 ORTHO05D007989 1.3e-30 137.5 143 55.2
MCO16G260 Micromonas commoda HOM05D006272 ORTHO05D007989 1.3e-30 137.5 128 46.9
QL12p034838 Quercus lobata HOM05D006272 ORTHO05D007989 6.1e-28 128.6 85 74.1
SalBow3G4540 Salvia bowleyana HOM05D006272 ORTHO05D007989 2.3e-27 126.7 136 51.5
Cpa.g.c35589.1 Carica papaya HOM05D006272 ORTHO05D007989 2.0e-26 123.6 136 50.0
MBI15_g10564_MAGBIO Magnolia biondii HOM05D006272 ORTHO05D007989 1.8e-24 117.1 108 57.4
Cre02.g095077 Chlamydomonas reinhardtii HOM05D006272 ORTHO05D007989 3.7e-17 92.8 114 36.0
TPR.G22672 Trifolium pratense HOM05D006272 ORTHO05D007989 1.8e-08 63.9 62 50.0
PRCOL_00004884 Prasinoderma coloniale HOM05D006272 ORTHO05D030206 1.6e-07 60.8 136 30.1
vmacro22872 Vaccinium macrocarpon HOM05D006272 ORTHO05D007989 4.5e-07 59.3 51 60.8


User provided reference genes

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