Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62030967 Chenopodium quinoa HOM05D003929 ORTHO05D004499 4.6e-256 887.5 485 100.0
AUR62008214 Chenopodium quinoa HOM05D003929 ORTHO05D004499 1.1e-188 663.7 471 76.4
EL10Ac5g10751 Beta vulgaris HOM05D003929 ORTHO05D004499 1.1e-153 547.4 545 61.5
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 3.4e-142 509.2 514 58.8
Hund09434 Selenicereus undatus HOM05D003929 ORTHO05D004499 6.3e-136 488.4 550 57.8
Sc04g0001820 Simmondsia chinensis HOM05D003929 ORTHO05D004499 5.6e-100 369.0 381 60.4
HanXRQChr16g0504021 Helianthus annuus HOM05D003929 ORTHO05D004499 5.2e-98 362.5 535 47.9
Dinv20657 Davidia involucrata HOM05D003929 ORTHO05D004499 5.8e-97 359.0 568 48.4
QL10p011722 Quercus lobata HOM05D003929 ORTHO05D004499 1.3e-96 357.8 529 47.3
RcHm_v2.0_Chr7g0193581 Rosa chinensis HOM05D003929 ORTHO05D004499 2.4e-95 353.6 532 47.6
PGR083G1389 Punica granatum HOM05D003929 ORTHO05D004499 4.1e-95 352.8 524 46.8
GSVIVG01007750001 Vitis vinifera HOM05D003929 ORTHO05D004499 5.4e-95 352.4 542 46.9
ECA232G3264 Erigeron canadensis HOM05D003929 ORTHO05D004499 1.2e-94 351.3 538 46.7
CiPaw.11G026500 Carya illinoinensis HOM05D003929 ORTHO05D004499 1.6e-94 350.9 546 45.8
FAN13G1321 Fragaria x ananassa HOM05D003929 ORTHO05D004499 2.3e-93 347.1 530 46.4
FAN18G3294 Fragaria x ananassa HOM05D003929 ORTHO05D004499 3.9e-93 346.3 532 46.2
Nitab4.5_0009783g0030 Nicotiana tabacum HOM05D003929 ORTHO05D004499 1.9e-92 344.0 497 46.9
Prupe.5G174100 Prunus persica HOM05D003929 ORTHO05D004499 3.3e-92 343.2 548 47.3
Thecc.03G012300 Theobroma cacao HOM05D003929 ORTHO05D004499 3.3e-92 343.2 536 48.7
FvH4_5g05290 Fragaria vesca HOM05D003929 ORTHO05D004499 4.3e-92 342.8 532 46.8
FAN04G3176 Fragaria x ananassa HOM05D003929 ORTHO05D004499 4.3e-92 342.8 531 46.5
FAN18G3765 Fragaria x ananassa HOM05D003929 ORTHO05D004499 5.6e-92 342.4 532 46.6
Oeu016382.1 Olea europaea HOM05D003929 ORTHO05D004499 5.6e-92 342.4 552 46.6
Dinv02898 Davidia involucrata HOM05D003929 ORTHO05D004499 7.3e-92 342.0 554 48.2
Duzib068G1333 Durio zibethinus HOM05D003929 ORTHO05D004499 2.8e-91 340.1 556 46.2
Hma1.2p1_0176F.1_g077430 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 2.8e-91 340.1 533 45.2
DCAR_026132 Daucus carota HOM05D003929 ORTHO05D004499 6.2e-91 339.0 535 46.4
Atru.chr9.2475 Acer truncatum HOM05D003929 ORTHO05D004499 8.0e-91 338.6 553 45.0
TWI14G0242 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 1.8e-90 337.4 533 42.4
Aqoxy3G02955 Aquilegia oxysepala HOM05D003929 ORTHO05D004499 6.8e-90 335.5 526 46.6
Gorai.008G295200 Gossypium raimondii HOM05D003929 ORTHO05D004499 6.8e-90 335.5 525 44.4
CSS0017959 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 2.0e-89 334.0 510 47.8
BcaB02g09694 Brassica carinata HOM05D003929 ORTHO05D004499 3.4e-89 333.2 488 44.5
Gohir.A12G274000 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.3e-88 331.3 525 44.4
Duzib205G0135 Durio zibethinus HOM05D003929 ORTHO05D004499 1.7e-88 330.9 544 45.8
Gohir.D12G274700 Gossypium hirsutum HOM05D003929 ORTHO05D004499 3.7e-88 329.7 525 44.2
Glyma.06G182600 Glycine max HOM05D003929 ORTHO05D004499 4.9e-88 329.3 481 44.7
SalBow5G2324 Salvia bowleyana HOM05D003929 ORTHO05D004499 1.9e-87 327.4 561 43.5
Solyc06g071470.4 Solanum lycopersicum HOM05D003929 ORTHO05D004499 2.1e-86 323.9 549 45.4
MSTRG.11449 Avicennia marina HOM05D003929 ORTHO05D004499 2.7e-86 323.6 538 45.9
Lsat_1_v5_gn_4_75281 Lactuca sativa HOM05D003929 ORTHO05D004499 2.7e-86 323.6 521 45.3
Sp2g25960 Schrenkiella parvula HOM05D003929 ORTHO05D004499 2.7e-86 323.6 522 43.7
CAN.G781.12 Capsicum annuum HOM05D003929 ORTHO05D004499 6.0e-86 322.4 527 43.8
Nitab4.5_0001017g0080 Nicotiana tabacum HOM05D003929 ORTHO05D004499 6.0e-86 322.4 546 43.8
TAR374G1605 Trochodendron aralioides HOM05D003929 ORTHO05D004499 6.0e-86 322.4 568 45.1
BolC9t53798H Brassica oleracea HOM05D003929 ORTHO05D004499 7.8e-86 322.0 527 43.5
BraA06t25903Z Brassica rapa HOM05D003929 ORTHO05D004499 7.8e-86 322.0 494 43.1
Potri.012G080800 Populus trichocarpa HOM05D003929 ORTHO05D004499 7.8e-86 322.0 554 45.1
Cpa.g.sc770.1 Carica papaya HOM05D003929 ORTHO05D004499 1.0e-85 321.6 547 45.0
Manes.14G066000 Manihot esculenta HOM05D003929 ORTHO05D004499 1.0e-85 321.6 548 47.1
Carub.0008s2353 Capsella rubella HOM05D003929 ORTHO05D004499 1.3e-85 321.2 519 42.8
BraA09t36437Z Brassica rapa HOM05D003929 ORTHO05D004499 1.7e-85 320.9 498 45.0
BcaC04g23392 Brassica carinata HOM05D003929 ORTHO05D004499 3.9e-85 319.7 527 43.5
A09p07860 Brassica napus HOM05D003929 ORTHO05D004499 3.9e-85 319.7 487 45.4
C09p08860 Brassica napus HOM05D003929 ORTHO05D004499 3.9e-85 319.7 527 43.5
BcaC01g02523 Brassica carinata HOM05D003929 ORTHO05D004499 6.6e-85 318.9 535 41.9
Thhalv10004017m.g Eutrema salsugineum HOM05D003929 ORTHO05D004499 6.6e-85 318.9 530 43.4
A06p29570 Brassica napus HOM05D003929 ORTHO05D004499 8.6e-85 318.5 493 43.0
CAN.G628.79 Capsicum annuum HOM05D003929 ORTHO05D004499 8.6e-85 318.5 538 45.4
CiPaw.12G026400 Carya illinoinensis HOM05D003929 ORTHO05D004499 1.1e-84 318.2 534 43.4
ClCG06G017000 Citrullus lanatus HOM05D003929 ORTHO05D004499 1.5e-84 317.8 527 46.3
Cfa019114 Carpinus fangiana HOM05D003929 ORTHO05D004499 2.5e-84 317.0 579 43.9
vmacro19383 Vaccinium macrocarpon HOM05D003929 ORTHO05D004499 2.5e-84 317.0 486 44.2
BolC3t18647H Brassica oleracea HOM05D003929 ORTHO05D004499 3.3e-84 316.6 537 41.9
C03p63930 Brassica napus HOM05D003929 ORTHO05D004499 4.3e-84 316.2 535 41.9
Sed0022246 Sechium edule HOM05D003929 ORTHO05D004499 4.3e-84 316.2 544 45.4
CARHR276590 Cardamine hirsuta HOM05D003929 ORTHO05D004499 5.6e-84 315.8 521 42.0
CANSAT80G0843 Cannabis sativa HOM05D003929 ORTHO05D004499 7.3e-84 315.5 549 46.4
Aa31LG11G880 Aethionema arabicum HOM05D003929 ORTHO05D004499 9.5e-84 315.1 544 42.8
PSO063G6021 Papaver somniferum HOM05D003929 ORTHO05D004499 2.1e-83 313.9 541 43.1
Rhsim08G0171800 Rhododendron simsii HOM05D003929 ORTHO05D004499 2.1e-83 313.9 532 45.9
Sopen06g027750 Solanum pennellii HOM05D003929 ORTHO05D004499 2.8e-83 313.5 543 45.1
PGSC0003DMG400027090 Solanum tuberosum HOM05D003929 ORTHO05D004499 2.8e-83 313.5 536 45.3
AL8G39770 Arabidopsis lyrata HOM05D003929 ORTHO05D004499 4.7e-83 312.8 525 42.5
AT5G62810 Arabidopsis thaliana HOM05D003929 ORTHO05D004499 4.7e-83 312.8 528 42.2
Potri.015G076100 Populus trichocarpa HOM05D003929 ORTHO05D004499 6.2e-83 312.4 556 44.1
Peaxi162Scf00017g02914 Petunia axillaris HOM05D003929 ORTHO05D004499 8.1e-83 312.0 534 44.0
TAR622G0564 Trochodendron aralioides HOM05D003929 ORTHO05D004499 8.1e-83 312.0 553 42.0
Phvul.009G178800 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 4.0e-82 309.7 539 41.7
VMungo1309G0717 Vigna mungo HOM05D003929 ORTHO05D004499 1.2e-81 308.1 501 41.5
Migut.I00015 Erythranthe guttata HOM05D003929 ORTHO05D004499 1.5e-81 307.8 541 44.0
MD14G1180600 Malus domestica HOM05D003929 ORTHO05D004499 1.5e-81 307.8 505 44.2
MELO3C026291.2 Cucumis melo HOM05D003929 ORTHO05D004499 3.4e-81 306.6 540 45.4
TWI39G0937 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 9.9e-81 305.1 547 44.8
Cc04_g14000 Coffea canephora HOM05D003929 ORTHO05D004499 1.7e-80 304.3 551 43.7
CsaV3_1G001520 Cucumis sativus L. HOM05D003929 ORTHO05D004499 2.9e-80 303.5 537 45.1
Lalb_Chr13g0297821 Lupinus albus HOM05D003929 ORTHO05D004499 4.9e-80 302.8 538 42.9
Nitab4.5_0007719g0020 Nicotiana tabacum HOM05D003929 ORTHO05D004499 1.4e-79 301.2 503 43.9
TPR.G37553 Trifolium pratense HOM05D003929 ORTHO05D004499 1.4e-79 301.2 477 43.2
Eucgr.B00317 Eucalyptus grandis HOM05D003929 ORTHO05D004499 1.9e-79 300.8 514 42.6
TWI31G0970 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 1.9e-79 300.8 547 44.4
Manes.06G104600 Manihot esculenta HOM05D003929 ORTHO05D004499 2.4e-79 300.4 523 44.9
Hma1.2p1_0000F.1_g000890 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 4.1e-79 299.7 477 45.9
Lj5C124G9 Lonicera japonica HOM05D003929 ORTHO05D004499 9.2e-79 298.5 543 45.5
Lj4g0023186 Lotus japonicus HOM05D003929 ORTHO05D004499 2.1e-78 297.4 542 44.1
Lalb_Chr11g0071231 Lupinus albus HOM05D003929 ORTHO05D004499 3.5e-78 296.6 462 42.9
FAN08G2589 Fragaria x ananassa HOM05D003929 ORTHO05D004499 4.6e-78 296.2 510 44.9
Medtr4g106880 Medicago truncatula HOM05D003929 ORTHO05D004499 2.5e-76 290.4 436 47.9
THA.LOC104821459 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 3.3e-76 290.0 517 43.9
arahy.Tifrunner.gnm1.ann1.S02CG0 Arachis hypogaea HOM05D003929 ORTHO05D004499 4.3e-76 289.7 528 39.8
MD06G1174100 Malus domestica HOM05D003929 ORTHO05D004499 1.2e-75 288.1 508 43.3
Actinidia33066 Actinidia chinensis HOM05D003929 ORTHO05D004499 1.1e-74 285.0 449 48.3
Lj1g0005514 Lotus japonicus HOM05D003929 ORTHO05D004499 5.2e-74 282.7 453 43.5
THA.LOC104818232 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 2.6e-73 280.4 515 40.6
Ca_21916_v3 Cicer arietinum L. HOM05D003929 ORTHO05D004499 3.4e-73 280.0 477 45.7
Haze_07467 Corylus avellana HOM05D003929 ORTHO05D004499 1.3e-72 278.1 642 38.8
Ciclev10024320m.g Citrus clementina HOM05D003929 ORTHO05D004499 2.9e-72 276.9 401 52.1
Nn1g01975 Nelumbo nucifera HOM05D003929 ORTHO05D004499 2.9e-72 276.9 540 43.1
arahy.Tifrunner.gnm1.ann1.R24CC5 Arachis hypogaea HOM05D003929 ORTHO05D004499 3.8e-72 276.6 533 37.9
SGA_v2.0_scaffold90G27941 Striga asiatica HOM05D003929 ORTHO05D004499 3.8e-72 276.6 534 41.9
Glyma.05G037400 Glycine max HOM05D003929 ORTHO05D004499 1.9e-71 274.2 518 41.7
Phvul.003G200200 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 3.2e-71 273.5 539 42.1
MBI10_g41915_MAGBIO Magnolia biondii HOM05D003929 ORTHO05D004499 3.5e-70 270.0 543 41.6
CDE11G0983 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 6.0e-70 269.2 415 44.8
Glyma.17G089700 Glycine max HOM05D003929 ORTHO05D004499 1.0e-69 268.5 513 43.3
PSO832G4520 Papaver somniferum HOM05D003929 ORTHO05D004499 1.0e-69 268.5 548 40.3
Solyc03g114330.3 Solanum lycopersicum HOM05D003929 ORTHO05D004499 1.3e-69 268.1 502 39.4
VMungo1215G1851 Vigna mungo HOM05D003929 ORTHO05D004499 2.3e-69 267.3 515 42.9
COL.COLO4_30035 Corchorus olitorius HOM05D003929 ORTHO05D004499 5.6e-68 262.7 510 39.0
Peaxi162Scf00689g00222 Petunia axillaris HOM05D003929 ORTHO05D004499 5.6e-68 262.7 519 40.3
SalBow5G2758 Salvia bowleyana HOM05D003929 ORTHO05D004499 1.2e-67 261.5 527 38.5
CDE05G2632 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 1.1e-66 258.5 522 40.0
Psat4g057880 Pisum sativum HOM05D003929 ORTHO05D004499 1.4e-66 258.1 378 46.0
ATR0730G040 Amborella trichopoda HOM05D003929 ORTHO05D004499 2.4e-66 257.3 459 40.3
Sed0009068 Sechium edule HOM05D003929 ORTHO05D004499 2.9e-64 250.4 386 46.6
Hund02741 Selenicereus undatus HOM05D003929 ORTHO05D004499 8.4e-64 248.8 475 40.6
Lalb_Chr07g0182721 Lupinus albus HOM05D003929 ORTHO05D004499 1.2e-62 245.0 515 41.2
Sopen03g033430 Solanum pennellii HOM05D003929 ORTHO05D004499 3.0e-61 240.4 504 36.9
PGR044G0511 Punica granatum HOM05D003929 ORTHO05D004499 6.6e-61 239.2 519 40.5
Actinidia19318 Actinidia chinensis HOM05D003929 ORTHO05D004499 4.3e-60 236.5 429 43.6
arahy.Tifrunner.gnm1.ann1.W2DQVT Arachis hypogaea HOM05D003929 ORTHO05D004499 2.1e-59 234.2 548 41.2
SEGI_11105 Sequoiadendron giganteum HOM05D003929 ORTHO05D004499 4.2e-55 219.9 422 39.8
Migut.D01928 Erythranthe guttata HOM05D003929 ORTHO05D004499 1.2e-54 218.4 463 39.7
HPP92_021833 Vanilla planifolia HOM05D003929 ORTHO05D004499 2.7e-54 217.2 386 39.4
Nitab4.5_0000003g0590 Nicotiana tabacum HOM05D003929 ORTHO05D004499 1.1e-52 211.8 504 36.1
Atru.chr11.2035 Acer truncatum HOM05D003929 ORTHO05D004499 6.9e-50 202.6 455 36.5
unitig_749.g13474 Utricularia gibba HOM05D003929 ORTHO05D004499 9.9e-49 198.7 397 37.3
Zm00001eb356320 Zea mays HOM05D003929 ORTHO05D004499 1.6e-46 191.4 457 35.2
Oeu024692.2 Olea europaea HOM05D003929 ORTHO05D004499 7.9e-46 189.1 254 55.5
CSS0023375 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 1.5e-44 184.9 234 54.7
COL.COLO4_24172 Corchorus olitorius HOM05D003929 ORTHO05D004499 2.8e-43 180.6 370 36.2
Thecc.02G250700 Theobroma cacao HOM05D003929 ORTHO05D004499 9.0e-42 175.6 380 33.2
Oeu022163.1 Olea europaea HOM05D003929 ORTHO05D004499 3.8e-40 170.2 268 44.0
Gohir.A03G139300 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.3e-37 161.8 403 33.5
Zm00001eb267680 Zea mays HOM05D003929 ORTHO05D004499 1.8e-37 161.4 459 32.5
Lj9A449T48 Lonicera japonica HOM05D003929 ORTHO05D004499 2.8e-35 154.1 236 46.2
Zm00001eb126680 Zea mays HOM05D003929 ORTHO05D004499 1.1e-34 152.1 480 33.1
Gohir.D02G162200 Gossypium hirsutum HOM05D003929 ORTHO05D004499 5.9e-33 146.4 389 31.4
Gorai.005G182200 Gossypium raimondii HOM05D003929 ORTHO05D004499 1.3e-32 145.2 389 31.4
Pp3c9_20380 Physcomitrium patens HOM05D003929 ORTHO05D004499 5.5e-31 139.8 189 46.0
Psat4g209200 Pisum sativum HOM05D003929 ORTHO05D004499 9.4e-31 139.0 322 35.4
PSO135G0191 Papaver somniferum HOM05D003929 ORTHO05D004499 1.2e-30 138.7 174 48.9
Os01g0107000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 4.6e-30 136.7 223 41.7
Mapoly0102s0017 Marchantia polymorpha HOM05D003929 ORTHO05D004499 8.8e-29 132.5 204 44.6
Pp3c15_21860 Physcomitrium patens HOM05D003929 ORTHO05D004499 1.5e-28 131.7 198 42.4
CBR_g3508 Chara braunii HOM05D003929 ORTHO05D004499 6.3e-27 126.3 251 38.6
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 6.3e-27 126.3 175 47.4
Os05g0101200 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 1.4e-26 125.2 527 30.2
AagrBONN_evm.TU.Sc2ySwM_117.2261 Anthoceros agrestis HOM05D003929 ORTHO05D004499 4.1e-26 123.6 204 39.7
FAN24G3310 Fragaria x ananassa HOM05D003929 ORTHO05D004499 4.1e-26 123.6 253 37.5
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 7.2e-23 112.8 207 48.3
Cfa019127 Carpinus fangiana HOM05D003929 ORTHO05D004499 7.9e-22 109.4 192 40.6
Lj9A449G50 Lonicera japonica HOM05D003929 ORTHO05D004499 3.9e-21 107.1 137 51.1
arahy.Tifrunner.gnm1.ann1.49JIZL Arachis hypogaea HOM05D003929 ORTHO05D004499 1.3e-19 102.1 237 37.1
SHI17030 Sapria himalayana HOM05D003929 ORTHO05D004499 1.0e-16 92.4 56 71.4
SHI17029 Sapria himalayana HOM05D003929 ORTHO05D004499 6.1e-14 83.2 130 40.0
Nitab4.5_0000866g0190 Nicotiana tabacum HOM05D003929 ORTHO05D004499 1.3e-11 75.5 101 44.6
CBR_g3506 Chara braunii HOM05D003929 ORTHO05D004499 1.1e-10 72.4 74 43.2
CBR_g10793 Chara braunii HOM05D027206 ORTHO05D004499 3.1e-10 70.9 60 61.7
ClCG01G013120 Citrullus lanatus HOM05D003929 ORTHO05D004499 4.1e-10 70.5 133 37.6
Zm00001eb296750 Zea mays HOM05D003929 ORTHO05D004499 1.2e-09 68.9 72 50.0
Os05g0578000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 1.0e-08 65.9 116 37.1
Cre10.g454025 Chlamydomonas reinhardtii HOM05D003929 ORTHO05D004499 2.2e-08 64.7 247 30.8
PGSC0003DMG400024502 Solanum tuberosum HOM05D003929 ORTHO05D004499 2.9e-08 64.3 134 39.6
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 5.0e-08 63.5 172 41.9


User provided reference genes

Program Settings