Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62030864 Chenopodium quinoa HOM05D001568 ORTHO05D004404 3.8e-32 141.0 74 100.0
EL10Ac9g22180 Beta vulgaris HOM05D001568 ORTHO05D004404 3.5e-14 81.3 77 62.3
Gohir.A03G181200 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.2e-09 66.2 74 55.4
Gohir.D02G203199 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.0e-08 63.2 74 54.1
Cpa.g.sc106.34 Carica papaya HOM05D001568 ORTHO05D004404 2.2e-08 62.0 74 52.7
RcHm_v2.0_Chr6g0248611 Rosa chinensis HOM05D001568 ORTHO05D004404 2.9e-08 61.6 74 55.4
FAN15G0246 Fragaria x ananassa HOM05D001568 ORTHO05D004404 3.8e-08 61.2 74 54.1
TAR628G0963 Trochodendron aralioides HOM05D001568 ORTHO05D004404 3.8e-08 61.2 74 50.0
TAR376G0823 Trochodendron aralioides HOM05D001568 ORTHO05D004404 4.9e-08 60.8 74 51.4
Duzib052G0823 Durio zibethinus HOM05D001568 ORTHO05D004404 6.5e-08 60.5 74 52.7
Hma1.2p1_0661F.1_g198120 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 6.5e-08 60.5 74 52.7
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 6.5e-08 60.5 74 52.7
RhsimUnG0183600 Rhododendron simsii HOM05D001568 ORTHO05D004404 6.5e-08 60.5 74 52.7
Hma1.2p1_1051F.1_g252100 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 8.4e-08 60.1 74 52.7
Hma1.2p1_2793F.1_g328635 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 8.4e-08 60.1 74 52.7
Manes.10G086400 Manihot esculenta HOM05D001568 ORTHO05D004404 8.4e-08 60.1 74 51.4
Oeu021354.1 Olea europaea HOM05D001568 ORTHO05D004404 8.4e-08 60.1 74 52.7
Sed0001915 Sechium edule HOM05D001568 ORTHO05D004404 1.4e-07 59.3 74 54.1
MELO3C018020.2 Cucumis melo HOM05D001568 ORTHO05D004404 1.9e-07 58.9 74 52.7
MD05G1104700 Malus domestica HOM05D001568 ORTHO05D004404 1.9e-07 58.9 69 55.1
MD10G1109000 Malus domestica HOM05D001568 ORTHO05D004404 1.9e-07 58.9 69 55.1
Potri.009G085800 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.9e-07 58.9 74 52.7
CANSAT25G0020 Cannabis sativa HOM05D001568 ORTHO05D004404 2.5e-07 58.5 74 52.7
COL.COLO4_32490 Corchorus olitorius HOM05D001568 ORTHO05D004404 2.5e-07 58.5 74 55.4
FAN24G1537 Fragaria x ananassa HOM05D001568 ORTHO05D004404 2.5e-07 58.5 74 54.1
Gorai.005G230000 Gossypium raimondii HOM05D001568 ORTHO05D004404 2.5e-07 58.5 69 53.6
QL11p029492 Quercus lobata HOM05D001568 ORTHO05D004404 3.2e-07 58.2 69 53.6
Thecc.02G119400 Theobroma cacao HOM05D001568 ORTHO05D004404 3.2e-07 58.2 72 50.0
CsaV3_4G000120 Cucumis sativus L. HOM05D001568 ORTHO05D004404 4.2e-07 57.8 74 51.4
FvH4_2g03450 Fragaria vesca HOM05D001568 ORTHO05D004404 4.2e-07 57.8 69 55.1
Manes.07G057600 Manihot esculenta HOM05D001568 ORTHO05D004404 4.2e-07 57.8 74 50.0
Haze_10310 Corylus avellana HOM05D001568 ORTHO05D004404 5.5e-07 57.4 74 50.0
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 5.5e-07 57.4 74 48.6
Peaxi162Scf00003g02832 Petunia axillaris HOM05D001568 ORTHO05D004404 5.5e-07 57.4 69 52.2
SalBow6G5155 Salvia bowleyana HOM05D001568 ORTHO05D004404 5.5e-07 57.4 74 51.4
PGSC0003DMG400012835 Solanum tuberosum HOM05D001568 ORTHO05D004404 5.5e-07 57.4 69 52.2
CSS0000365 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 7.1e-07 57.0 74 50.0
Duzib132G0295 Durio zibethinus HOM05D001568 ORTHO05D004404 7.1e-07 57.0 74 50.0
Nn5g30644 Nelumbo nucifera HOM05D001568 ORTHO05D004404 7.1e-07 57.0 74 48.6
Gohir.A13G047600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 9.3e-07 56.6 74 51.4
Gohir.D13G045900 Gossypium hirsutum HOM05D001568 ORTHO05D004404 9.3e-07 56.6 74 51.4
Nitab4.5_0001099g0080 Nicotiana tabacum HOM05D001568 ORTHO05D004404 9.3e-07 56.6 74 48.6
Psat0s6663g0040 Pisum sativum HOM05D001568 ORTHO05D004404 9.3e-07 56.6 73 49.3
Potri.001G290200 Populus trichocarpa HOM05D001568 ORTHO05D004404 9.3e-07 56.6 74 50.0
Medtr5g005330 Medicago truncatula HOM05D001568 ORTHO05D004404 1.2e-06 56.2 65 53.8
TAR625G0364 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.2e-06 56.2 74 47.3
CiPaw.05G020400 Carya illinoinensis HOM05D001568 ORTHO05D004404 1.6e-06 55.8 74 48.6
AUR62027022 Chenopodium quinoa HOM05D001568 ORTHO05D004404 1.6e-06 55.8 64 53.1
Gorai.013G051400 Gossypium raimondii HOM05D001568 ORTHO05D004404 1.6e-06 55.8 74 50.0
Prupe.8G149100 Prunus persica HOM05D001568 ORTHO05D004404 2.1e-06 55.5 69 52.2
PGSC0003DMG400025934 Solanum tuberosum HOM05D001568 ORTHO05D004404 2.1e-06 55.5 74 48.6
CSS0019733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 2.7e-06 55.1 74 50.0
ClCG10G010080 Citrullus lanatus HOM05D001568 ORTHO05D004404 2.7e-06 55.1 73 49.3
Nn6g34513 Nelumbo nucifera HOM05D001568 ORTHO05D004404 2.7e-06 55.1 74 47.3
TPR.G8320 Trifolium pratense HOM05D001568 ORTHO05D004404 2.7e-06 55.1 65 52.3
Cc00_g17980 Coffea canephora HOM05D001568 ORTHO05D004404 3.5e-06 54.7 74 51.4
DCAR_021945 Daucus carota HOM05D001568 ORTHO05D004404 3.5e-06 54.7 65 52.3
Nitab4.5_0001458g0030 Nicotiana tabacum HOM05D001568 ORTHO05D004404 3.5e-06 54.7 69 50.7
Oeu037288.1 Olea europaea HOM05D001568 ORTHO05D004404 3.5e-06 54.7 72 48.6
Solyc01g106890.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 3.5e-06 54.7 74 48.6
Sopen01g049170 Solanum pennellii HOM05D001568 ORTHO05D004404 3.5e-06 54.7 74 48.6
CAN.G606.68 Capsicum annuum HOM05D001568 ORTHO05D004404 4.6e-06 54.3 74 47.3
Ciclev10029760m.g Citrus clementina HOM05D001568 ORTHO05D004404 4.6e-06 54.3 72 48.6
Aa31LG8G6440 Aethionema arabicum HOM05D001568 ORTHO05D004404 6.0e-06 53.9 74 50.0
Peaxi162Scf00016g03013 Petunia axillaris HOM05D001568 ORTHO05D004404 7.9e-06 53.5 69 50.7


User provided reference genes

Program Settings