Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62030863 Chenopodium quinoa HOM05D001568 ORTHO05D004404 4.4e-27 124.0 68 100.0
AUR62027022 Chenopodium quinoa HOM05D001568 ORTHO05D004404 1.5e-22 109.0 68 91.2
Gohir.D02G203199 Gossypium hirsutum HOM05D001568 ORTHO05D004404 2.4e-17 91.7 67 76.1
Gohir.A13G047600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 4.1e-17 90.9 67 80.6
Gohir.D13G045900 Gossypium hirsutum HOM05D001568 ORTHO05D004404 4.1e-17 90.9 67 80.6
Gorai.005G230000 Gossypium raimondii HOM05D001568 ORTHO05D004404 4.1e-17 90.9 64 79.7
Gorai.013G051400 Gossypium raimondii HOM05D001568 ORTHO05D004404 7.0e-17 90.1 67 76.1
Gohir.A03G181200 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.6e-16 89.0 67 74.6
ClCG10G010080 Citrullus lanatus HOM05D001568 ORTHO05D004404 4.5e-16 87.4 67 74.6
Psat0s6663g0040 Pisum sativum HOM05D001568 ORTHO05D004404 1.0e-15 86.3 64 75.0
SalBow6G5155 Salvia bowleyana HOM05D001568 ORTHO05D004404 1.3e-15 85.9 65 73.8
Sed0007286 Sechium edule HOM05D001568 ORTHO05D004404 1.3e-15 85.9 67 74.6
Manes.07G057600 Manihot esculenta HOM05D001568 ORTHO05D004404 1.7e-15 85.5 67 76.1
FAN15G0246 Fragaria x ananassa HOM05D001568 ORTHO05D004404 3.8e-15 84.3 67 74.6
MELO3C018020.2 Cucumis melo HOM05D001568 ORTHO05D004404 5.0e-15 84.0 67 71.6
Medtr5g005330 Medicago truncatula HOM05D001568 ORTHO05D004404 5.0e-15 84.0 60 80.0
QL11p029492 Quercus lobata HOM05D001568 ORTHO05D004404 5.0e-15 84.0 65 76.9
Thecc.02G119400 Theobroma cacao HOM05D001568 ORTHO05D004404 5.0e-15 84.0 67 74.6
Manes.10G086400 Manihot esculenta HOM05D001568 ORTHO05D004404 6.5e-15 83.6 67 74.6
Haze_10310 Corylus avellana HOM05D001568 ORTHO05D004404 8.5e-15 83.2 67 73.1
TPR.G8320 Trifolium pratense HOM05D001568 ORTHO05D004404 8.5e-15 83.2 60 80.0
Cc00_g17980 Coffea canephora HOM05D001568 ORTHO05D004404 1.1e-14 82.8 67 76.1
CsaV3_4G000120 Cucumis sativus L. HOM05D001568 ORTHO05D004404 1.1e-14 82.8 67 70.1
MD05G1104700 Malus domestica HOM05D001568 ORTHO05D004404 1.1e-14 82.8 64 76.6
Sed0001915 Sechium edule HOM05D001568 ORTHO05D004404 1.5e-14 82.4 67 71.6
Duzib052G0823 Durio zibethinus HOM05D001568 ORTHO05D004404 1.9e-14 82.0 67 68.7
FAN24G1537 Fragaria x ananassa HOM05D001568 ORTHO05D004404 1.9e-14 82.0 66 74.2
CSS0000365 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 2.5e-14 81.6 67 68.7
MD10G1109000 Malus domestica HOM05D001568 ORTHO05D004404 2.5e-14 81.6 64 75.0
RcHm_v2.0_Chr6g0248611 Rosa chinensis HOM05D001568 ORTHO05D004404 2.5e-14 81.6 67 73.1
Sc08g0004350 Simmondsia chinensis HOM05D001568 ORTHO05D004404 2.5e-14 81.6 75 68.0
EL10Ac9g22181 Beta vulgaris HOM05D001568 ORTHO05D004404 3.2e-14 81.3 58 84.5
FvH4_2g03450 Fragaria vesca HOM05D001568 ORTHO05D004404 3.2e-14 81.3 64 75.0
Cpa.g.sc106.34 Carica papaya HOM05D001568 ORTHO05D004404 7.2e-14 80.1 67 71.6
PSO017G7292 Papaver somniferum HOM05D001568 ORTHO05D004404 7.2e-14 80.1 68 67.6
PSO170G4708 Papaver somniferum HOM05D001568 ORTHO05D004404 7.2e-14 80.1 68 67.6
Prupe.8G149100 Prunus persica HOM05D001568 ORTHO05D004404 7.2e-14 80.1 64 73.4
TWI59G0092 Tripterygium wilfordii HOM05D001568 ORTHO05D004404 7.2e-14 80.1 67 71.6
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 9.4e-14 79.7 67 70.1
Hma1.2p1_0661F.1_g198120 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 9.4e-14 79.7 67 70.1
CAN.G606.68 Capsicum annuum HOM05D001568 ORTHO05D004404 1.2e-13 79.3 67 68.7
Duzib132G0295 Durio zibethinus HOM05D001568 ORTHO05D004404 1.2e-13 79.3 67 67.2
CiPaw.05G020400 Carya illinoinensis HOM05D001568 ORTHO05D004404 1.6e-13 79.0 67 68.7
Lj1g0010962 Lotus japonicus HOM05D001568 ORTHO05D004404 1.6e-13 79.0 63 69.8
Nn5g30644 Nelumbo nucifera HOM05D001568 ORTHO05D004404 1.6e-13 79.0 67 68.7
Nitab4.5_0001099g0080 Nicotiana tabacum HOM05D001568 ORTHO05D004404 1.6e-13 79.0 67 68.7
PGSC0003DMG400025934 Solanum tuberosum HOM05D001568 ORTHO05D004404 1.6e-13 79.0 67 68.7
Potri.009G085800 Populus trichocarpa HOM05D001568 ORTHO05D004404 2.1e-13 78.6 67 70.1
TAR625G0364 Trochodendron aralioides HOM05D001568 ORTHO05D004404 2.1e-13 78.6 67 65.7
Oeu037288.1 Olea europaea HOM05D001568 ORTHO05D004404 2.7e-13 78.2 67 68.7
PGR142G4268 Punica granatum HOM05D001568 ORTHO05D004404 2.7e-13 78.2 69 73.9
Solyc01g106890.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 2.7e-13 78.2 67 67.2
Sopen01g049170 Solanum pennellii HOM05D001568 ORTHO05D004404 2.7e-13 78.2 67 67.2
TAR628G0963 Trochodendron aralioides HOM05D001568 ORTHO05D004404 2.7e-13 78.2 67 68.7
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 3.6e-13 77.8 70 65.7
RhsimUnG0183600 Rhododendron simsii HOM05D001568 ORTHO05D004404 3.6e-13 77.8 70 65.7
TAR376G0823 Trochodendron aralioides HOM05D001568 ORTHO05D004404 3.6e-13 77.8 67 67.2
Ciclev10029760m.g Citrus clementina HOM05D001568 ORTHO05D004404 4.7e-13 77.4 65 66.2
CANSAT25G0020 Cannabis sativa HOM05D001568 ORTHO05D004404 6.1e-13 77.0 64 73.4
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 6.1e-13 77.0 64 70.3
CSS0019733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 8.0e-13 76.6 67 67.2
Peaxi162Scf00016g03013 Petunia axillaris HOM05D001568 ORTHO05D004404 8.0e-13 76.6 65 67.7
Hma1.2p1_1051F.1_g252100 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 1.0e-12 76.3 67 68.7
Hma1.2p1_2793F.1_g328635 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 1.0e-12 76.3 67 68.7
Oeu021354.1 Olea europaea HOM05D001568 ORTHO05D004404 1.0e-12 76.3 67 67.2
COL.COLO4_32490 Corchorus olitorius HOM05D001568 ORTHO05D004404 1.4e-12 75.9 67 65.7
Potri.001G290200 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.4e-12 75.9 64 71.9
Glyma.01G241700 Glycine max HOM05D001568 ORTHO05D004404 1.8e-12 75.5 60 76.7
Nn6g34513 Nelumbo nucifera HOM05D001568 ORTHO05D004404 1.8e-12 75.5 67 64.2
Nitab4.5_0001458g0030 Nicotiana tabacum HOM05D001568 ORTHO05D004404 2.3e-12 75.1 65 66.2
Actinidia34354 Actinidia chinensis HOM05D001568 ORTHO05D004404 3.0e-12 74.7 62 71.0
Aa31LG8G6440 Aethionema arabicum HOM05D001568 ORTHO05D004404 3.0e-12 74.7 64 67.2
Lsat_1_v5_gn_9_113420 Lactuca sativa HOM05D001568 ORTHO05D004404 3.0e-12 74.7 64 71.9
DCAR_021945 Daucus carota HOM05D001568 ORTHO05D004404 8.8e-12 73.2 60 75.0
Migut.B00459 Erythranthe guttata HOM05D001568 ORTHO05D004404 8.8e-12 73.2 67 65.7
Peaxi162Scf00003g02832 Petunia axillaris HOM05D001568 ORTHO05D004404 1.5e-11 72.4 64 64.1
PGSC0003DMG400012835 Solanum tuberosum HOM05D001568 ORTHO05D004404 1.5e-11 72.4 68 61.8
Aqoxy6G02530 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 2.0e-11 72.0 64 62.5
AL3G33100 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 2.0e-11 72.0 67 62.7
Carub.0003s1953 Capsella rubella HOM05D001568 ORTHO05D004404 2.6e-11 71.6 67 62.7
SHI05029 Sapria himalayana HOM05D001568 ORTHO05D004404 2.6e-11 71.6 67 59.7
Atru.chr5.2306 Acer truncatum HOM05D001568 ORTHO05D004404 3.4e-11 71.2 61 70.5
BcaB06g26036 Brassica carinata HOM05D001568 ORTHO05D004404 4.4e-11 70.9 68 61.8
THA.LOC104803443 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 7.5e-11 70.1 68 61.8
AT3G19660 Arabidopsis thaliana HOM05D001568 ORTHO05D004404 1.7e-10 68.9 67 61.2
A05p29940 Brassica napus HOM05D001568 ORTHO05D004404 2.2e-10 68.6 68 60.3
BraA05t21839Z Brassica rapa HOM05D001568 ORTHO05D004404 2.2e-10 68.6 68 60.3
Phvul.002G051000 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 2.8e-10 68.2 54 77.8
Actinidia27997 Actinidia chinensis HOM05D001568 ORTHO05D004404 8.3e-10 66.6 65 64.6
BcaC05g28437 Brassica carinata HOM05D001568 ORTHO05D004404 8.3e-10 66.6 68 58.8
A01p35050 Brassica napus HOM05D001568 ORTHO05D004404 8.3e-10 66.6 64 57.8
C05p45170 Brassica napus HOM05D001568 ORTHO05D004404 8.3e-10 66.6 68 58.8
BolC5t33243H Brassica oleracea HOM05D001568 ORTHO05D004404 8.3e-10 66.6 68 58.8
BraA01t03586Z Brassica rapa HOM05D001568 ORTHO05D004404 8.3e-10 66.6 64 57.8
CARHR095120 Cardamine hirsuta HOM05D001568 ORTHO05D004404 2.4e-09 65.1 67 58.2
VMungo1215G2526 Vigna mungo HOM05D001946 ORTHO05D002111 4.1e-09 64.3 67 62.7
Aqoxy1G00264 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 3.5e-08 61.2 60 55.0
Aqoxy335s003 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 3.5e-08 61.2 60 55.0
Glyma.18G279700 Glycine max HOM05D001568 ORTHO05D004404 1.7e-07 58.9 58 60.3
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 2.3e-07 58.5 58 60.3
Phvul.008G021300 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 2.9e-07 58.2 58 58.6
Lalb_Chr02g0144911 Lupinus albus HOM05D001568 ORTHO05D004404 3.8e-07 57.8 55 63.6
Medtr7g019160 Medicago truncatula HOM05D001568 ORTHO05D004404 5.0e-07 57.4 62 54.8
Potri.017G109900 Populus trichocarpa HOM05D001568 ORTHO05D004404 5.0e-07 57.4 62 54.8
Lj1g0007549 Lotus japonicus HOM05D001568 ORTHO05D004404 1.5e-06 55.8 58 55.2
Hma1.2p1_0588F.1_g184400 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 1.9e-06 55.5 62 54.8
QL02p053549 Quercus lobata HOM05D001568 ORTHO05D004404 1.9e-06 55.5 58 56.9
EL10Ac9g22180 Beta vulgaris HOM05D001568 ORTHO05D004404 3.3e-06 54.7 77 50.6
Sabra17G0091900 Salix brachista HOM05D001568 ORTHO05D004404 4.2e-06 54.3 62 54.8
TPR.G3300 Trifolium pratense HOM05D001568 ORTHO05D004404 4.2e-06 54.3 58 53.4
COL.COLO4_08509 Corchorus olitorius HOM05D001568 ORTHO05D004404 5.5e-06 53.9 65 53.8
Atru.chr8.777 Acer truncatum HOM05D001568 ORTHO05D004404 9.5e-06 53.1 59 50.8
CiPaw.04G004300 Carya illinoinensis HOM05D001568 ORTHO05D004404 9.5e-06 53.1 56 57.1
TAR622G0735 Trochodendron aralioides HOM05D000764 ORTHO05D002006 9.5e-06 53.1 62 54.8


User provided reference genes

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