Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62030859 Chenopodium quinoa HOM05D001568 ORTHO05D008804 6.6e-111 404.1 206 100.0
AUR62027019 Chenopodium quinoa HOM05D001568 ORTHO05D008804 4.4e-107 391.3 206 97.1
EL10Ac9g22185 Beta vulgaris HOM05D001568 ORTHO05D008804 2.7e-96 355.5 206 87.9
Sc14g0002500 Simmondsia chinensis HOM05D001568 ORTHO05D008804 7.9e-88 327.4 205 81.5
TAR628G1281 Trochodendron aralioides HOM05D001568 ORTHO05D008804 9.0e-84 313.9 205 76.6
Atru.chr5.2305 Acer truncatum HOM05D001568 ORTHO05D008804 7.6e-83 310.8 205 75.6
GSVIVG01037056001 Vitis vinifera HOM05D001568 ORTHO05D008804 1.7e-82 309.7 205 76.1
CSS0011887 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D008804 4.9e-82 308.1 204 76.5
HanXRQChr03g0072921 Helianthus annuus HOM05D001568 ORTHO05D008804 4.9e-82 308.1 205 75.1
CiPaw.05G020500 Carya illinoinensis HOM05D001568 ORTHO05D008804 6.5e-82 307.8 205 73.7
CANSAT25G3386 Cannabis sativa HOM05D001568 ORTHO05D008804 1.1e-81 307.0 205 75.6
Lj9A337T44 Lonicera japonica HOM05D001568 ORTHO05D008804 1.4e-81 306.6 205 75.6
Ciclev10030269m.g Citrus clementina HOM05D001568 ORTHO05D008804 2.5e-81 305.8 205 74.6
MBI16_g16470_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D008804 3.2e-81 305.4 205 74.1
Hma1.2p1_0661F.1_g198113 Hydrangea macrophylla HOM05D001568 ORTHO05D008804 4.2e-81 305.1 206 74.3
Hma1.2p1_0661F.1_g198116 Hydrangea macrophylla HOM05D001568 ORTHO05D008804 5.5e-81 304.7 205 74.1
Gorai.008G019500 Gossypium raimondii HOM05D001568 ORTHO05D008804 2.1e-80 302.8 205 73.2
RcHm_v2.0_Chr6g0248601 Rosa chinensis HOM05D001568 ORTHO05D008804 3.5e-80 302.0 205 73.2
ECA240G3857 Erigeron canadensis HOM05D001568 ORTHO05D008804 4.6e-80 301.6 204 74.5
FAN15G2988 Fragaria x ananassa HOM05D001568 ORTHO05D008804 6.0e-80 301.2 205 73.2
Manes.07G057400 Manihot esculenta HOM05D001568 ORTHO05D008804 1.0e-79 300.4 205 73.2
Potri.001G290100 Populus trichocarpa HOM05D001568 ORTHO05D008804 1.3e-79 300.1 206 73.3
Gohir.A12G018701 Gossypium hirsutum HOM05D001568 ORTHO05D008804 1.8e-79 299.7 205 72.7
Ca_11027_v3 Cicer arietinum L. HOM05D001568 ORTHO05D008804 2.3e-79 299.3 205 72.7
Migut.B00460 Erythranthe guttata HOM05D001568 ORTHO05D008804 3.9e-79 298.5 205 73.7
Eucgr.I02493 Eucalyptus grandis HOM05D001568 ORTHO05D008804 6.7e-79 297.7 203 73.9
Nn5g30645 Nelumbo nucifera HOM05D001568 ORTHO05D008804 6.7e-79 297.7 205 72.7
Haze_10309 Corylus avellana HOM05D001568 ORTHO05D008804 8.7e-79 297.4 205 71.7
Peaxi162Scf00016g03020 Petunia axillaris HOM05D001568 ORTHO05D008804 8.7e-79 297.4 205 72.2
Aqoxy1G00265 Aquilegia oxysepala HOM05D001568 ORTHO05D008804 1.1e-78 297.0 205 71.7
Cfa004705 Carpinus fangiana HOM05D001568 ORTHO05D008804 1.1e-78 297.0 205 72.2
FvH4_2g03440 Fragaria vesca HOM05D001568 ORTHO05D008804 1.5e-78 296.6 205 72.2
Nitab4.5_0010145g0020 Nicotiana tabacum HOM05D001568 ORTHO05D008804 1.9e-78 296.2 205 72.2
Prupe.8G149200 Prunus persica HOM05D001568 ORTHO05D008804 1.9e-78 296.2 205 70.2
Solyc01g106880.3 Solanum lycopersicum HOM05D001568 ORTHO05D008804 1.9e-78 296.2 205 71.2
Cfa004706 Carpinus fangiana HOM05D001568 ORTHO05D008804 2.5e-78 295.8 205 71.7
Cc00_g17990 Coffea canephora HOM05D001568 ORTHO05D008804 3.3e-78 295.4 204 73.0
AL1G57570 Arabidopsis lyrata HOM05D001568 ORTHO05D008804 4.3e-78 295.0 205 70.2
Nitab4.5_0001099g0070 Nicotiana tabacum HOM05D001568 ORTHO05D008804 4.3e-78 295.0 205 71.7
Rhsim05G0092700 Rhododendron simsii HOM05D001568 ORTHO05D008804 4.3e-78 295.0 206 71.8
TWI14G1141 Tripterygium wilfordii HOM05D001568 ORTHO05D008804 4.3e-78 295.0 205 71.2
CAN.G606.69 Capsicum annuum HOM05D001568 ORTHO05D008804 7.4e-78 294.3 205 71.7
Thhalv10011739m.g Eutrema salsugineum HOM05D001568 ORTHO05D008804 7.4e-78 294.3 205 69.8
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 7.4e-78 294.3 205 72.7
Sp1g36840 Schrenkiella parvula HOM05D001568 ORTHO05D008804 1.3e-77 293.5 205 69.3
SpUn0137_0040 Schrenkiella parvula HOM05D001568 ORTHO05D008804 1.3e-77 293.5 205 69.3
MD10G1109100 Malus domestica HOM05D001568 ORTHO05D008804 1.6e-77 293.1 205 71.2
Medtr1g106055 Medicago truncatula HOM05D001568 ORTHO05D008804 1.6e-77 293.1 205 70.7
Thecc.02G119500 Theobroma cacao HOM05D001568 ORTHO05D008804 1.6e-77 293.1 205 72.2
Sopen01g049160 Solanum pennellii HOM05D001568 ORTHO05D008804 2.1e-77 292.7 205 70.7
Actinidia04394 Actinidia chinensis HOM05D001568 ORTHO05D008804 2.8e-77 292.4 200 74.0
AT1G50000 Arabidopsis thaliana HOM05D001568 ORTHO05D008804 2.8e-77 292.4 205 69.3
PSO017G1092 Papaver somniferum HOM05D001568 ORTHO05D008804 2.8e-77 292.4 205 70.7
Carub.0151s0002 Capsella rubella HOM05D001568 ORTHO05D008804 4.8e-77 291.6 205 69.3
CARHR040100 Cardamine hirsuta HOM05D001568 ORTHO05D008804 6.3e-77 291.2 205 68.8
DCAR_001738 Daucus carota HOM05D001568 ORTHO05D008804 1.1e-76 290.4 205 71.7
Aa31LG10G4130 Aethionema arabicum HOM05D001568 ORTHO05D008804 1.8e-76 289.7 205 68.3
BcaB07g33452 Brassica carinata HOM05D001568 ORTHO05D008804 1.8e-76 289.7 205 68.3
PSO170G6576 Papaver somniferum HOM05D001568 ORTHO05D008804 1.8e-76 289.7 205 70.2
SalBow6G4520 Salvia bowleyana HOM05D001568 ORTHO05D008804 2.4e-76 289.3 205 70.7
arahy.Tifrunner.gnm1.ann1.ESII2D Arachis hypogaea HOM05D001568 ORTHO05D008804 5.3e-76 288.1 204 70.1
arahy.Tifrunner.gnm1.ann1.804FU2 Arachis hypogaea HOM05D001568 ORTHO05D008804 6.9e-76 287.7 204 69.6
TPR.G21139 Trifolium pratense HOM05D001568 ORTHO05D008804 6.9e-76 287.7 205 70.2
BcaC08g43178 Brassica carinata HOM05D001568 ORTHO05D008804 2.0e-75 286.2 205 67.8
PGR142G1084 Punica granatum HOM05D001568 ORTHO05D008804 2.0e-75 286.2 204 71.1
THA.LOC104826495 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 4.5e-75 285.0 205 68.8
THA.LOC104826496 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 4.5e-75 285.0 205 68.8
QL11p029473 Quercus lobata HOM05D001568 ORTHO05D008804 1.0e-74 283.9 260 58.8
A06p03430 Brassica napus HOM05D001568 ORTHO05D008804 8.5e-74 280.8 206 67.5
C06p04780 Brassica napus HOM05D001568 ORTHO05D008804 1.4e-73 280.0 206 67.5
Lsat_1_v5_gn_9_113380 Lactuca sativa HOM05D001568 ORTHO05D008804 1.4e-73 280.0 204 70.1
Lj1g0020001 Lotus japonicus HOM05D001568 ORTHO05D008804 1.4e-73 280.0 206 68.4
BolC6t35607H Brassica oleracea HOM05D001568 ORTHO05D008804 2.5e-73 279.3 206 67.0
CDE04G1257 Ceratophyllum demersum HOM05D001568 ORTHO05D008804 2.5e-73 279.3 205 66.8
Glyma.20G135600 Glycine max HOM05D001568 ORTHO05D008804 7.2e-73 277.7 205 68.3
Lalb_Chr06g0165001 Lupinus albus HOM05D001568 ORTHO05D008804 9.3e-73 277.3 205 67.3
BraA06t23551Z Brassica rapa HOM05D001568 ORTHO05D008804 2.7e-72 275.8 206 67.0
COL.COLO4_32489 Corchorus olitorius HOM05D001568 ORTHO05D008804 3.6e-72 275.4 205 70.2
VMungo0720G2114 Vigna mungo HOM05D001568 ORTHO05D008804 4.6e-72 275.0 204 69.6
unitig_744.g24207 Utricularia gibba HOM05D001568 ORTHO05D008804 1.0e-71 273.9 204 66.7
MELO3C018530.2 Cucumis melo HOM05D001568 ORTHO05D008804 2.5e-70 269.2 205 65.4
CsaV3_7G007700 Cucumis sativus L. HOM05D001568 ORTHO05D008804 7.4e-70 267.7 205 64.4
ATR0739G203 Amborella trichopoda HOM05D001568 ORTHO05D008804 3.7e-69 265.4 205 65.9
HPP92_026588 Vanilla planifolia HOM05D001568 ORTHO05D008804 3.7e-69 265.4 205 63.9
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 4.8e-69 265.0 201 69.2
Os03g0729700 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D008804 8.2e-69 264.2 204 64.2
Ah.01g007040 Amaranthus hybridus HOM05D001568 ORTHO05D008804 5.3e-68 261.5 160 82.5
Gohir.D12G019200 Gossypium hirsutum HOM05D001568 ORTHO05D008804 5.3e-68 261.5 205 65.4
ClCG02G007120 Citrullus lanatus HOM05D001568 ORTHO05D008804 1.2e-67 260.4 201 64.7
Sabra16G0181700 Salix brachista HOM05D001568 ORTHO05D008804 8.8e-63 244.2 211 63.0
THA.LOC104809178 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 4.8e-61 238.4 166 71.7
vmacro22256 Vaccinium macrocarpon HOM05D001568 ORTHO05D009161 8.2e-61 237.7 237 57.4
AagrBONN_evm.TU.Sc2ySwM_362.475 Anthoceros agrestis HOM05D001568 ORTHO05D008804 2.0e-54 216.5 203 55.7
Phvul.007G046900 Phaseolus vulgaris HOM05D001568 ORTHO05D008804 8.2e-53 211.1 160 66.2
Mapoly0081s0053 Marchantia polymorpha HOM05D001568 ORTHO05D008804 5.0e-50 201.8 203 51.2
Pp3c3_17050 Physcomitrium patens HOM05D001568 ORTHO05D008804 1.1e-49 200.7 203 52.2
SMO358G0428 Selaginella moellendorffii HOM05D001568 ORTHO05D008804 4.0e-47 192.2 209 48.8
CBR_g48696 Chara braunii HOM05D001568 ORTHO05D008804 9.7e-46 187.6 205 49.3
Psat6g214440 Pisum sativum HOM05D001568 ORTHO05D008804 1.1e-44 184.1 118 73.7
TAR376G0809 Trochodendron aralioides HOM05D001568 ORTHO05D008804 2.4e-44 183.0 142 72.5
Sed0001597 Sechium edule HOM05D001568 ORTHO05D008804 4.7e-40 168.7 205 45.9
FAN24G1144 Fragaria x ananassa HOM05D001568 ORTHO05D008804 3.1e-36 156.0 103 72.8
Manes.10G086502 Manihot esculenta HOM05D001568 ORTHO05D008804 6.5e-34 148.3 204 42.6
Aqoxy335s004 Aquilegia oxysepala HOM05D001568 ORTHO05D008804 1.1e-33 147.5 96 72.9
FAN24G0164 Fragaria x ananassa HOM05D001568 ORTHO05D008804 1.5e-33 147.1 105 70.5
MCO02G312 Micromonas commoda HOM05D001568 ORTHO05D008804 4.2e-33 145.6 171 45.0
Thhalv10012254m.g Eutrema salsugineum HOM05D001568 ORTHO05D008804 7.0e-28 128.3 100 63.0
MSTRG.20236 Avicennia marina HOM05D001568 ORTHO05D008804 5.6e-25 118.6 100 64.0
PRCOL_00000434 Prasinoderma coloniale HOM05D001568 ORTHO05D008804 7.0e-20 101.7 210 34.8
Cre03.g175800 Chlamydomonas reinhardtii HOM05D001568 ORTHO05D008804 6.0e-19 98.6 323 29.1
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 1.4e-15 87.4 104 51.9
RhsimUnG0183700 Rhododendron simsii HOM05D002338 ORTHO05D006706 1.8e-15 87.0 132 46.2
Ah.01g007020 Amaranthus hybridus HOM05D001568 ORTHO05D008804 9.8e-14 81.3 47 80.9
C05p34140 Brassica napus HOM05D001568 ORTHO05D019891 3.6e-08 62.8 49 59.2
BcaC05g27454 Brassica carinata HOM05D001568 ORTHO05D019891 6.2e-08 62.0 49 57.1
BcaC05g27456 Brassica carinata HOM05D001568 ORTHO05D019891 6.2e-08 62.0 49 57.1
BolC5t32148H Brassica oleracea HOM05D058656 ORTHO05D019891 6.2e-08 62.0 49 57.1
Actinidia27998 Actinidia chinensis HOM05D001568 ORTHO05D008804 5.8e-06 55.5 34 64.7


User provided reference genes

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