Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62030840 Chenopodium quinoa HOM05D005969 ORTHO05D007407 2.2e-216 755.4 379 100.0
AUR62027000 Chenopodium quinoa HOM05D005969 ORTHO05D007407 2.2e-200 702.2 387 92.2
EL10Ac9g22204 Beta vulgaris HOM05D005969 ORTHO05D007407 1.3e-173 613.2 386 81.6
CANSAT56G2142 Cannabis sativa HOM05D005969 ORTHO05D007407 7.0e-159 564.3 377 76.1
Potri.001G044000 Populus trichocarpa HOM05D005969 ORTHO05D007407 5.0e-157 558.1 375 74.7
Sabra01G0030300 Salix brachista HOM05D005969 ORTHO05D007407 1.9e-156 556.2 378 73.5
Haze_16671 Corylus avellana HOM05D005969 ORTHO05D007407 2.1e-155 552.7 382 73.3
TWI12G1191 Tripterygium wilfordii HOM05D005969 ORTHO05D007407 2.1e-155 552.7 373 74.8
Lj3g0024544 Lotus japonicus HOM05D005969 ORTHO05D007407 2.8e-155 552.4 384 72.7
Hund06517 Selenicereus undatus HOM05D005969 ORTHO05D007407 2.8e-155 552.4 395 73.9
COL.COLO4_26714 Corchorus olitorius HOM05D005969 ORTHO05D007407 4.7e-155 551.6 343 78.4
Duzib235G1247 Durio zibethinus HOM05D005969 ORTHO05D007407 6.2e-155 551.2 397 71.8
Gohir.A05G118900 Gossypium hirsutum HOM05D005969 ORTHO05D007407 1.4e-154 550.1 342 78.1
Medtr4g007190 Medicago truncatula HOM05D005969 ORTHO05D007407 4.0e-154 548.5 385 72.7
CSS0032429 Camellia sinensis var. sinensis HOM05D005969 ORTHO05D007407 6.8e-154 547.7 383 72.8
Sc12g0005780 Simmondsia chinensis HOM05D005969 ORTHO05D007407 6.8e-154 547.7 383 74.7
CAN.G1932.3 Capsicum annuum HOM05D005969 ORTHO05D007407 1.5e-153 546.6 364 73.9
Cfa001877 Carpinus fangiana HOM05D005969 ORTHO05D007407 1.5e-153 546.6 388 72.4
Carub.0002s1982 Capsella rubella HOM05D005969 ORTHO05D007407 2.0e-153 546.2 351 76.9
Nitab4.5_0000886g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 2.0e-153 546.2 365 73.7
Gorai.009G123400 Gossypium raimondii HOM05D005969 ORTHO05D007407 3.4e-153 545.4 342 77.2
Psat7g262880 Pisum sativum HOM05D005969 ORTHO05D007407 5.8e-153 544.7 384 72.7
AT1G73060 Arabidopsis thaliana HOM05D005969 ORTHO05D007407 9.9e-153 543.9 351 76.6
arahy.Tifrunner.gnm1.ann1.M9PPGY Arachis hypogaea HOM05D005969 ORTHO05D007407 9.9e-153 543.9 356 75.8
Hma1.2p1_0109F.1_g052610 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 9.9e-153 543.9 381 72.7
Gohir.D05G119800 Gossypium hirsutum HOM05D005969 ORTHO05D007407 1.3e-152 543.5 342 77.2
PGSC0003DMG402028489 Solanum tuberosum HOM05D005969 ORTHO05D007407 1.7e-152 543.1 379 73.1
Thhalv10018762m.g Eutrema salsugineum HOM05D005969 ORTHO05D007407 2.2e-152 542.7 351 76.9
arahy.Tifrunner.gnm1.ann1.WI8D6W Arachis hypogaea HOM05D005969 ORTHO05D007407 2.9e-152 542.3 355 75.8
CiPaw.01G255000 Carya illinoinensis HOM05D005969 ORTHO05D007407 2.9e-152 542.3 383 71.3
Nitab4.5_0008962g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 3.7e-152 542.0 374 71.9
Actinidia18250 Actinidia chinensis HOM05D005969 ORTHO05D007407 4.9e-152 541.6 377 72.1
MELO3C023469.2 Cucumis melo HOM05D005969 ORTHO05D007407 6.4e-152 541.2 364 74.2
RcHm_v2.0_Chr2g0132911 Rosa chinensis HOM05D005969 ORTHO05D007407 8.3e-152 540.8 373 73.5
GSVIVG01015969001 Vitis vinifera HOM05D005969 ORTHO05D007407 1.1e-151 540.4 381 73.2
Aa31LG4G3330 Aethionema arabicum HOM05D005969 ORTHO05D007407 1.9e-151 539.7 349 76.2
Lalb_Chr01g0012061 Lupinus albus HOM05D005969 ORTHO05D007407 1.9e-151 539.7 318 81.1
Nn6g31679 Nelumbo nucifera HOM05D005969 ORTHO05D007407 3.2e-151 538.9 386 71.5
FAN02G2588 Fragaria x ananassa HOM05D005969 ORTHO05D007407 4.1e-151 538.5 388 72.4
CsaV3_7G031880 Cucumis sativus L. HOM05D005969 ORTHO05D007407 5.4e-151 538.1 381 73.0
FvH4_6g28580 Fragaria vesca HOM05D005969 ORTHO05D007407 7.1e-151 537.7 380 72.6
Sopen06g025730 Solanum pennellii HOM05D005969 ORTHO05D007407 7.1e-151 537.7 377 72.4
Ciclev10025812m.g Citrus clementina HOM05D005969 ORTHO05D007407 9.2e-151 537.3 327 78.0
MD10G1047600 Malus domestica HOM05D005969 ORTHO05D007407 9.2e-151 537.3 387 72.1
Solyc06g068480.3 Solanum lycopersicum HOM05D005969 ORTHO05D007407 9.2e-151 537.3 377 71.9
Sp5g28020 Schrenkiella parvula HOM05D005969 ORTHO05D007407 1.2e-150 537.0 351 76.1
THA.LOC104814755 Tarenaya hassleriana HOM05D005969 ORTHO05D007407 1.2e-150 537.0 348 74.7
Atru.chr10.2417 Acer truncatum HOM05D005969 ORTHO05D007407 1.6e-150 536.6 379 71.5
Dinv23280 Davidia involucrata HOM05D005969 ORTHO05D007407 1.6e-150 536.6 379 72.8
TAR628G0900 Trochodendron aralioides HOM05D005969 ORTHO05D007407 1.6e-150 536.6 391 71.1
Eucgr.F03965 Eucalyptus grandis HOM05D005969 ORTHO05D007407 3.5e-150 535.4 323 78.9
AL2G32810 Arabidopsis lyrata HOM05D005969 ORTHO05D007407 4.6e-150 535.0 351 75.5
Glyma.08G219200 Glycine max HOM05D005969 ORTHO05D007407 6.0e-150 534.6 318 80.8
ClCG09G003350 Citrullus lanatus HOM05D005969 ORTHO05D007407 1.0e-149 533.9 335 77.6
BraA07t31457Z Brassica rapa HOM05D005969 ORTHO05D007407 1.3e-149 533.5 349 75.4
Phvul.010G161700 Phaseolus vulgaris HOM05D005969 ORTHO05D007407 1.3e-149 533.5 318 79.9
BolC6t39767H Brassica oleracea HOM05D005969 ORTHO05D007407 3.0e-149 532.3 346 75.7
PGR102G2845 Punica granatum HOM05D005969 ORTHO05D007407 5.1e-149 531.6 375 70.9
SGA_v2.0_scaffold37G14696 Striga asiatica HOM05D005969 ORTHO05D007407 5.1e-149 531.6 388 69.6
VMungo0331G0028 Vigna mungo HOM05D005969 ORTHO05D007407 6.6e-149 531.2 375 71.2
A07p39070 Brassica napus HOM05D005969 ORTHO05D007407 8.6e-149 530.8 346 75.4
C06p47280 Brassica napus HOM05D005969 ORTHO05D007407 8.6e-149 530.8 346 75.4
Sed0009912 Sechium edule HOM05D005969 ORTHO05D007407 8.6e-149 530.8 346 74.6
Cc04_g05150 Coffea canephora HOM05D005969 ORTHO05D007407 4.3e-148 528.5 379 70.7
Migut.I00689 Erythranthe guttata HOM05D005969 ORTHO05D007407 5.6e-148 528.1 376 71.8
MSTRG.22801 Avicennia marina HOM05D005969 ORTHO05D007407 3.6e-147 525.4 357 72.5
Cpa.g.sc1250.2 Carica papaya HOM05D005969 ORTHO05D007407 1.1e-146 523.9 347 76.7
MBI05_g33301_MAGBIO Magnolia biondii HOM05D005969 ORTHO05D007407 1.1e-146 523.9 380 70.8
Thecc.06G042200 Theobroma cacao HOM05D005969 ORTHO05D007407 1.4e-146 523.5 369 72.6
ATR0807G102 Amborella trichopoda HOM05D005969 ORTHO05D007407 6.8e-146 521.2 373 69.4
PSO541G5031 Papaver somniferum HOM05D005969 ORTHO05D007407 8.9e-146 520.8 390 66.9
HanXRQChr04g0099681 Helianthus annuus HOM05D005969 ORTHO05D007407 1.2e-145 520.4 381 69.6
PSO675G4447 Papaver somniferum HOM05D005969 ORTHO05D007407 2.9e-144 515.8 353 71.4
Lsat_1_v5_gn_1_31041 Lactuca sativa HOM05D005969 ORTHO05D007407 4.9e-144 515.0 386 68.1
ECA247G4019 Erigeron canadensis HOM05D005969 ORTHO05D007407 1.1e-143 513.8 371 68.7
Ah.01g024670 Amaranthus hybridus HOM05D005969 ORTHO05D007407 5.4e-143 511.5 384 72.1
Aqoxy5G00978 Aquilegia oxysepala HOM05D005969 ORTHO05D007407 6.0e-142 508.1 378 67.2
DCAR_021370 Daucus carota HOM05D005969 ORTHO05D007407 1.6e-139 500.0 385 66.0
HPP92_025491 Vanilla planifolia HOM05D005969 ORTHO05D007407 1.6e-139 500.0 372 66.7
SalBow7G3052 Salvia bowleyana HOM05D005969 ORTHO05D007407 6.2e-139 498.0 395 64.6
CDE06G0123 Ceratophyllum demersum HOM05D005969 ORTHO05D007407 4.0e-138 495.4 349 70.8
Os02g0117100 Oryza sativa ssp. japonica HOM05D005969 ORTHO05D007407 6.9e-138 494.6 316 75.6
Rhsim08G0203900 Rhododendron simsii HOM05D005969 ORTHO05D007407 2.9e-136 489.2 381 66.7
QL05p035856 Quercus lobata HOM05D005969 ORTHO05D007407 1.1e-132 477.2 276 82.2
Peaxi162Scf00207g00440 Petunia axillaris HOM05D005969 ORTHO05D007407 2.5e-132 476.1 381 65.4
FAN05G1215 Fragaria x ananassa HOM05D005969 ORTHO05D007407 1.7e-128 463.4 332 71.4
unitig_27.g25102 Utricularia gibba HOM05D005969 ORTHO05D002795 2.2e-128 463.0 357 66.9
Lj9C492T12 Lonicera japonica HOM05D005969 ORTHO05D007407 8.1e-123 444.5 268 78.7
HanXRQChr14g0426701 Helianthus annuus HOM05D005969 ORTHO05D007407 1.9e-119 433.3 267 77.2
vmacro19064 Vaccinium macrocarpon HOM05D005969 ORTHO05D007407 1.6e-118 430.3 261 80.1
Mapoly0001s0169 Marchantia polymorpha HOM05D005969 ORTHO05D007407 7.9e-118 427.9 315 63.2
Pp3c4_10300 Physcomitrium patens HOM05D005969 ORTHO05D007407 5.1e-117 425.2 318 64.5
HPP92_025442 Vanilla planifolia HOM05D005969 ORTHO05D007407 2.5e-116 422.9 268 73.1
Manes.11G065200 Manihot esculenta HOM05D005969 ORTHO05D007407 1.3e-115 420.6 314 70.1
AagrBONN_evm.TU.Sc2ySwM_362.432 Anthoceros agrestis HOM05D005969 ORTHO05D007407 3.8e-112 409.1 324 60.8
SMO358G0640 Selaginella moellendorffii HOM05D005969 ORTHO05D007407 3.5e-110 402.5 318 60.4
arahy.Tifrunner.gnm1.ann1.5US335 Arachis hypogaea HOM05D005969 ORTHO05D007407 8.5e-104 381.3 272 70.2
Prupe.3G098800 Prunus persica HOM05D005969 ORTHO05D007407 4.2e-103 379.0 279 70.6
arahy.Tifrunner.gnm1.ann1.9VR9ZH Arachis hypogaea HOM05D005969 ORTHO05D007407 1.8e-101 373.6 267 69.3
HanXRQChr04g0099721 Helianthus annuus HOM05D005969 ORTHO05D007407 1.2e-97 360.9 290 64.1
FAN14G2562 Fragaria x ananassa HOM05D005969 ORTHO05D007407 1.7e-96 357.1 285 67.0
CARHR066030 Cardamine hirsuta HOM05D005969 ORTHO05D007407 2.1e-94 350.1 256 69.9
arahy.Tifrunner.gnm1.ann1.79PBZ8 Arachis hypogaea HOM05D005969 ORTHO05D007407 1.8e-82 310.5 267 65.2
arahy.Tifrunner.gnm1.ann1.UJC0YQ Arachis hypogaea HOM05D005969 ORTHO05D007407 4.5e-73 279.3 273 56.8
MCO01G214 Micromonas commoda HOM05D005969 ORTHO05D007407 1.1e-71 274.6 316 42.7
MCO01G215 Micromonas commoda HOM05D005969 ORTHO05D007407 1.1e-71 274.6 316 42.7
Sc12g0008350 Simmondsia chinensis HOM05D005969 ORTHO05D007407 2.5e-71 273.5 155 85.2
Cre03.g184550 Chlamydomonas reinhardtii HOM05D005969 ORTHO05D007407 4.2e-71 272.7 311 46.6
PRCOL_00001281 Prasinoderma coloniale HOM05D005969 ORTHO05D007407 5.5e-71 272.3 332 44.6
Ca_20531_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 9.4e-71 271.6 203 68.5
Zm00001eb230040 Zea mays HOM05D005969 ORTHO05D007407 2.7e-65 253.4 214 60.7
Hma1.2p1_0109F.1_g052630 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 7.7e-65 251.9 166 76.5
Ca_20538_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 4.7e-62 242.7 130 89.2
MCO09G747 Micromonas commoda HOM05D005969 ORTHO05D007407 2.6e-36 157.1 398 31.4
CBR_g50572 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-34 151.8 100 71.0
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 1.6e-33 147.9 91 74.7
Sc12g0008300 Simmondsia chinensis HOM05D005969 ORTHO05D007407 6.2e-30 136.0 90 74.4
SEGI_39006 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 5.2e-29 132.9 85 69.4
HanXRQChr04g0099751 Helianthus annuus HOM05D005969 ORTHO05D007407 1.2e-28 131.7 79 78.5
CBR_g50568 Chara braunii HOM05D000004 ORTHO05D000002 3.1e-21 107.1 125 44.0
arahy.Tifrunner.gnm1.ann1.4WI1XR Arachis hypogaea HOM05D005969 ORTHO05D007407 1.4e-18 98.2 105 51.4
QL04p063552 Quercus lobata HOM05D005969 ORTHO05D007407 2.7e-17 94.0 74 67.6
BcaB04g17655 Brassica carinata HOM05D005969 ORTHO05D007407 2.3e-16 90.9 58 72.4
Glyma.07G022602 Glycine max HOM05D005969 ORTHO05D007407 4.8e-14 83.2 59 69.5
PGSC0003DMG400019818 Solanum tuberosum HOM05D005969 ORTHO05D007407 1.8e-13 81.3 95 51.6
Hma1.2p1_0109F.1_g052620 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 2.4e-13 80.9 54 66.7
HanXRQChr14g0426781 Helianthus annuus HOM05D005969 ORTHO05D007407 4.5e-12 76.6 47 76.6
SEGI_03763 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 9.9e-12 75.5 54 64.8
SEGI_15560 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 9.9e-12 75.5 54 64.8
TPR.G26782 Trifolium pratense HOM05D009488 ORTHO05D011222 1.3e-11 75.1 80 56.2
QL05p035860 Quercus lobata HOM05D005969 ORTHO05D007407 2.2e-11 74.3 98 51.0
Mapoly0052s0004 Marchantia polymorpha HOM05D001237 ORTHO05D009110 6.4e-11 72.8 318 27.0
Potri.003G182801 Populus trichocarpa HOM05D005969 ORTHO05D007407 4.2e-10 70.1 75 49.3
Pp3c12_7180 Physcomitrium patens HOM05D001237 ORTHO05D009110 7.1e-10 69.3 292 25.7
TPR.G23080 Trifolium pratense HOM05D005969 ORTHO05D007407 9.3e-10 68.9 49 73.5
Psat6g223920 Pisum sativum HOM05D002710 ORTHO05D002905 3.5e-09 67.0 106 42.5
Lj9C492T13 Lonicera japonica HOM05D005969 ORTHO05D007407 6.0e-09 66.2 103 44.7
MD00G1000600 Malus domestica HOM05D001237 ORTHO05D009110 3.9e-08 63.5 303 25.4
arahy.Tifrunner.gnm1.ann1.GZLR9S Arachis hypogaea HOM05D005969 ORTHO05D007407 6.7e-08 62.8 80 46.2
Zm00001eb208900 Zea mays HOM05D001237 ORTHO05D009110 8.7e-08 62.4 331 24.5
Nn3g19221 Nelumbo nucifera HOM05D001237 ORTHO05D009110 1.1e-07 62.0 283 25.4
Sed0014021 Sechium edule HOM05D001237 ORTHO05D009110 1.1e-07 62.0 327 23.9
vmacro22924 Vaccinium macrocarpon HOM05D001237 ORTHO05D009110 1.1e-07 62.0 295 26.1
Thecc.03G315000 Theobroma cacao HOM05D001237 ORTHO05D009110 1.5e-07 61.6 278 25.5
Cfa012569 Carpinus fangiana HOM05D001237 ORTHO05D009110 3.3e-07 60.5 281 24.9
Sopen08g024630 Solanum pennellii HOM05D001237 ORTHO05D009110 3.3e-07 60.5 281 24.6
Actinidia18147 Actinidia chinensis HOM05D001237 ORTHO05D009110 4.3e-07 60.1 295 26.4
CANSAT25G2402 Cannabis sativa HOM05D001237 ORTHO05D009110 7.4e-07 59.3 282 25.2
Sp2g19180 Schrenkiella parvula HOM05D001237 ORTHO05D009110 9.6e-07 58.9 291 24.7
Aqoxy3G02614 Aquilegia oxysepala HOM05D001237 ORTHO05D009110 1.6e-06 58.2 299 25.8
Lj8A324T105 Lonicera japonica HOM05D001237 ORTHO05D009110 1.6e-06 58.2 302 25.5
HanXRQChr04g0099771 Helianthus annuus HOM05D005969 ORTHO05D007407 3.7e-06 57.0 42 64.3
Hma1.2p1_0979F.1_g243590 Hydrangea macrophylla HOM05D001237 ORTHO05D009110 4.8e-06 56.6 289 24.9


User provided reference genes

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