Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62030797 Chenopodium quinoa HOM05D004421 ORTHO05D005227 6.1e-55 217.2 109 100.0
AUR62030497 Chenopodium quinoa HOM05D004421 ORTHO05D005227 8.8e-54 213.4 109 97.2
EL10Ac5g12553 Beta vulgaris HOM05D004421 ORTHO05D005227 2.6e-45 185.3 107 86.0
Ah.12g058680 Amaranthus hybridus HOM05D004421 ORTHO05D005227 5.7e-45 184.1 109 87.2
Hma1.2p1_0445F.1_g154450 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 7.4e-45 183.7 108 84.3
Lalb_Chr10g0105671 Lupinus albus HOM05D004421 ORTHO05D005227 9.7e-45 183.3 107 83.2
ECA236G3405 Erigeron canadensis HOM05D004421 ORTHO05D005227 2.8e-44 181.8 108 79.6
LjContig00564g0020145 Lotus japonicus HOM05D004421 ORTHO05D005227 4.8e-44 181.0 100 84.0
LjContig00564g0024160 Lotus japonicus HOM05D004421 ORTHO05D005227 4.8e-44 181.0 100 84.0
CANSAT64G1364 Cannabis sativa HOM05D004421 ORTHO05D005227 6.3e-44 180.6 108 79.6
HanXRQChr04g0126911 Helianthus annuus HOM05D004421 ORTHO05D005227 6.3e-44 180.6 100 85.0
arahy.Tifrunner.gnm1.ann1.J4LN0V Arachis hypogaea HOM05D004421 ORTHO05D005227 8.2e-44 180.3 107 80.4
Ca_23316_v3 Cicer arietinum L. HOM05D004421 ORTHO05D005227 8.2e-44 180.3 102 84.3
arahy.Tifrunner.gnm1.ann1.BKRM87 Arachis hypogaea HOM05D004421 ORTHO05D005227 1.1e-43 179.9 107 80.4
Phvul.008G212200 Phaseolus vulgaris HOM05D004421 ORTHO05D005227 1.1e-43 179.9 102 81.4
Glyma.14G047100 Glycine max HOM05D004421 ORTHO05D005227 1.4e-43 179.5 102 81.4
LjContig00564g0000485 Lotus japonicus HOM05D004421 ORTHO05D005227 1.4e-43 179.5 100 83.0
LjContig00564g0024311 Lotus japonicus HOM05D004421 ORTHO05D005227 1.4e-43 179.5 100 83.0
Medtr8g016300 Medicago truncatula HOM05D004421 ORTHO05D005227 1.8e-43 179.1 104 83.7
TWI36G1565 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 1.8e-43 179.1 108 81.5
VMungo0647G1664 Vigna mungo HOM05D004421 ORTHO05D005227 1.8e-43 179.1 102 81.4
Lsat_1_v5_gn_7_92700 Lactuca sativa HOM05D004421 ORTHO05D005227 2.4e-43 178.7 108 80.6
Oeu013122.1 Olea europaea HOM05D004421 ORTHO05D005227 2.4e-43 178.7 108 80.6
Prupe.3G211700 Prunus persica HOM05D004421 ORTHO05D005227 2.4e-43 178.7 107 79.4
ClCG02G009100 Citrullus lanatus HOM05D004421 ORTHO05D005227 4.1e-43 177.9 109 78.9
CsaV3_2G034620 Cucumis sativus L. HOM05D004421 ORTHO05D005227 4.1e-43 177.9 109 79.8
Medtr8g099150 Medicago truncatula HOM05D004421 ORTHO05D005227 4.1e-43 177.9 104 82.7
Manes.13G067100 Manihot esculenta HOM05D004421 ORTHO05D005227 5.3e-43 177.6 107 78.5
Psat4g220560 Pisum sativum HOM05D004421 ORTHO05D005227 5.3e-43 177.6 100 85.0
GSVIVG01036899001 Vitis vinifera HOM05D004421 ORTHO05D005227 5.3e-43 177.6 109 78.9
Peaxi162Scf00047g00850 Petunia axillaris HOM05D004421 ORTHO05D005227 7.0e-43 177.2 107 82.2
Sed0012667 Sechium edule HOM05D004421 ORTHO05D005227 7.0e-43 177.2 100 84.0
Hma1.2p1_0177F.1_g077900 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 1.2e-42 176.4 108 78.7
Hma1.2p1_0177F.1_g077905 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 1.2e-42 176.4 108 78.7
TWI79G1637 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 1.6e-42 176.0 108 80.6
Nitab4.5_0000138g0020 Nicotiana tabacum HOM05D004421 ORTHO05D005227 2.0e-42 175.6 100 83.0
Nitab4.5_0005588g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 2.0e-42 175.6 107 80.4
Potri.002G225600 Populus trichocarpa HOM05D004421 ORTHO05D005227 2.6e-42 175.3 105 78.1
SalBow3G0779 Salvia bowleyana HOM05D004421 ORTHO05D005227 2.6e-42 175.3 109 79.8
Glyma.02G269800 Glycine max HOM05D004421 ORTHO05D005227 3.5e-42 174.9 102 79.4
Thecc.07G030200 Theobroma cacao HOM05D004421 ORTHO05D005227 3.5e-42 174.9 108 78.7
TPR.G7933 Trifolium pratense HOM05D004421 ORTHO05D005227 3.5e-42 174.9 100 84.0
Gorai.005G241500 Gossypium raimondii HOM05D004421 ORTHO05D005227 4.5e-42 174.5 98 82.7
MSTRG.14457 Avicennia marina HOM05D004421 ORTHO05D005227 5.9e-42 174.1 108 77.8
Haze_12777 Corylus avellana HOM05D004421 ORTHO05D005227 5.9e-42 174.1 109 78.0
Cpa.g.sc12.255 Carica papaya HOM05D004421 ORTHO05D005227 7.7e-42 173.7 100 83.0
Eucgr.B01010 Eucalyptus grandis HOM05D004421 ORTHO05D005227 7.7e-42 173.7 100 81.0
PGR042G0750 Punica granatum HOM05D004421 ORTHO05D005227 7.7e-42 173.7 107 78.5
Cfa014325 Carpinus fangiana HOM05D004421 ORTHO05D005227 1.0e-41 173.3 107 78.5
FAN02G1632 Fragaria x ananassa HOM05D004421 ORTHO05D005227 1.3e-41 172.9 109 78.9
TPR.G1800 Trifolium pratense HOM05D004421 ORTHO05D005227 1.3e-41 172.9 100 82.0
CAN.G149.31 Capsicum annuum HOM05D004421 ORTHO05D005227 1.7e-41 172.6 107 79.4
FvH4_6g42460 Fragaria vesca HOM05D004421 ORTHO05D005227 1.7e-41 172.6 109 78.9
FAN05G5559 Fragaria x ananassa HOM05D004421 ORTHO05D005227 1.7e-41 172.6 109 78.9
FAN09G1846 Fragaria x ananassa HOM05D004421 ORTHO05D005227 1.7e-41 172.6 109 78.9
FAN14G1774 Fragaria x ananassa HOM05D004421 ORTHO05D005227 1.7e-41 172.6 109 78.9
Potri.014G157400 Populus trichocarpa HOM05D004421 ORTHO05D005227 1.7e-41 172.6 107 75.7
RcHm_v2.0_Chr2g0158361 Rosa chinensis HOM05D004421 ORTHO05D005227 1.7e-41 172.6 109 78.9
unitig_748.g8294 Utricularia gibba HOM05D004421 ORTHO05D005227 1.7e-41 172.6 105 80.0
ECA234G2260 Erigeron canadensis HOM05D004421 ORTHO05D005227 2.2e-41 172.2 98 84.7
vmacro09354 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 2.2e-41 172.2 107 79.4
Ciclev10009985m.g Citrus clementina HOM05D004421 ORTHO05D005227 2.9e-41 171.8 109 78.9
Gohir.A03G192600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 2.9e-41 171.8 98 81.6
Sabra02G0172700 Salix brachista HOM05D004421 ORTHO05D005227 2.9e-41 171.8 105 76.2
TAR629G1061 Trochodendron aralioides HOM05D004421 ORTHO05D005227 2.9e-41 171.8 109 78.0
MSTRG.12990 Avicennia marina HOM05D004421 ORTHO05D005227 3.8e-41 171.4 108 75.0
CSS0000360 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 3.8e-41 171.4 109 76.1
CSS0029217 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 3.8e-41 171.4 109 76.1
Oeu054302.1 Olea europaea HOM05D004421 ORTHO05D005227 3.8e-41 171.4 108 77.8
Peaxi162Scf00149g00049 Petunia axillaris HOM05D004421 ORTHO05D005227 3.8e-41 171.4 98 83.7
Rhsim04G0051300 Rhododendron simsii HOM05D004421 ORTHO05D005227 3.8e-41 171.4 108 79.6
CAN.G358.76 Capsicum annuum HOM05D004421 ORTHO05D005227 5.0e-41 171.0 107 78.5
Lsat_1_v5_gn_5_123820 Lactuca sativa HOM05D004421 ORTHO05D005227 5.0e-41 171.0 100 84.0
Sc12g0002130 Simmondsia chinensis HOM05D004421 ORTHO05D005227 5.0e-41 171.0 109 76.1
Aqoxy7G01112 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 6.5e-41 170.6 104 79.8
CDE04G3645 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 8.5e-41 170.2 98 83.7
QL10p065608 Quercus lobata HOM05D004421 ORTHO05D005227 8.5e-41 170.2 107 73.8
SHI33915 Sapria himalayana HOM05D004421 ORTHO05D005227 8.5e-41 170.2 108 75.0
unitig_32.g10858 Utricularia gibba HOM05D004421 ORTHO05D005227 8.5e-41 170.2 105 79.0
CiPaw.08G089000 Carya illinoinensis HOM05D004421 ORTHO05D005227 1.1e-40 169.9 100 81.0
DCAR_019262 Daucus carota HOM05D004421 ORTHO05D005227 1.1e-40 169.9 108 77.8
Nitab4.5_0007533g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.1e-40 169.9 107 78.5
Sopen02g017940 Solanum pennellii HOM05D004421 ORTHO05D005227 1.1e-40 169.9 98 83.7
PGSC0003DMG400010437 Solanum tuberosum HOM05D004421 ORTHO05D005227 1.1e-40 169.9 107 79.4
QL08p031014 Quercus lobata HOM05D004421 ORTHO05D005227 1.9e-40 169.1 107 73.8
Gohir.D02G213600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 2.5e-40 168.7 98 80.6
Solyc02g068770.4 Solanum lycopersicum HOM05D004421 ORTHO05D005227 2.5e-40 168.7 98 82.7
MELO3C019309.2 Cucumis melo HOM05D004421 ORTHO05D005227 3.2e-40 168.3 101 81.2
QL10p065434 Quercus lobata HOM05D004421 ORTHO05D005227 3.2e-40 168.3 107 72.9
CiPaw.03G156500 Carya illinoinensis HOM05D004421 ORTHO05D005227 4.2e-40 167.9 100 79.0
Duzib128G1691 Durio zibethinus HOM05D004421 ORTHO05D005227 4.2e-40 167.9 107 76.6
CDE06G2669 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 7.2e-40 167.2 98 81.6
SGA_v2.0_scaffold392G50685 Striga asiatica HOM05D004421 ORTHO05D005227 1.2e-39 166.4 108 75.9
CAN.G358.77 Capsicum annuum HOM05D004421 ORTHO05D005227 1.6e-39 166.0 107 76.6
Nitab4.5_0001288g0200 Nicotiana tabacum HOM05D004421 ORTHO05D005227 2.1e-39 165.6 107 76.6
Aqoxy6G00590 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 2.7e-39 165.2 107 72.0
DCAR_012923 Daucus carota HOM05D004421 ORTHO05D005227 3.6e-39 164.9 100 78.0
Hund24697 Selenicereus undatus HOM05D004421 ORTHO05D005227 3.6e-39 164.9 100 83.0
PSO017G4413 Papaver somniferum HOM05D004421 ORTHO05D005227 6.1e-39 164.1 108 75.9
PSO675G5827 Papaver somniferum HOM05D004421 ORTHO05D005227 6.1e-39 164.1 108 75.9
Atru.chr2.3508 Acer truncatum HOM05D004421 ORTHO05D005227 8.0e-39 163.7 102 78.4
Rhsim06G0166700 Rhododendron simsii HOM05D004421 ORTHO05D005227 1.4e-38 162.9 108 74.1
ATR0665G259 Amborella trichopoda HOM05D004421 ORTHO05D005227 4.0e-38 161.4 99 75.8
SGA_v2.0_scaffold363G49953 Striga asiatica HOM05D004421 ORTHO05D005227 4.0e-38 161.4 108 75.0
COL.COLO4_09709 Corchorus olitorius HOM05D004421 ORTHO05D005227 5.2e-38 161.0 108 76.9
SGA_v2.0_scaffold159G37698 Striga asiatica HOM05D004421 ORTHO05D005227 2.6e-37 158.7 101 75.2
Cc05_g02530 Coffea canephora HOM05D004421 ORTHO05D005227 7.5e-37 157.1 108 73.1
Cc05_g14180 Coffea canephora HOM05D004421 ORTHO05D005227 2.2e-36 155.6 100 75.0
Thhalv10015072m.g Eutrema salsugineum HOM05D004421 ORTHO05D005227 2.2e-36 155.6 108 73.1
THA.LOC104811627 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 2.8e-36 155.2 98 75.5
BcaB05g22185 Brassica carinata HOM05D004421 ORTHO05D005227 8.2e-36 153.7 108 71.3
Eucgr.B01013 Eucalyptus grandis HOM05D004421 ORTHO05D005227 1.4e-35 152.9 95 76.8
BraA02t06048Z Brassica rapa HOM05D004421 ORTHO05D005227 2.4e-35 152.1 110 69.1
Aa31LG3G11160 Aethionema arabicum HOM05D004421 ORTHO05D005227 3.1e-35 151.8 108 70.4
BcaC04g20265 Brassica carinata HOM05D004421 ORTHO05D005227 4.1e-35 151.4 108 70.4
BraA10t43337Z Brassica rapa HOM05D004421 ORTHO05D005227 4.1e-35 151.4 108 70.4
THA.LOC104813431 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 4.1e-35 151.4 98 74.5
BcaB08g35879 Brassica carinata HOM05D004421 ORTHO05D005227 7.0e-35 150.6 105 69.5
A02p09830 Brassica napus HOM05D004421 ORTHO05D005227 7.0e-35 150.6 110 68.2
Carub.0008s1546 Capsella rubella HOM05D004421 ORTHO05D005227 9.1e-35 150.2 108 68.5
C02p16370 Brassica napus HOM05D004421 ORTHO05D005227 1.6e-34 149.4 107 67.3
BolC2t07739H Brassica oleracea HOM05D004421 ORTHO05D005227 1.6e-34 149.4 107 67.3
Sp6g17090 Schrenkiella parvula HOM05D004421 ORTHO05D005227 1.6e-34 149.4 108 69.4
AT5G55140 Arabidopsis thaliana HOM05D004421 ORTHO05D005227 2.7e-34 148.7 108 68.5
AL8G30670 Arabidopsis lyrata HOM05D004421 ORTHO05D005227 3.5e-34 148.3 108 67.6
MBI16_g23852_MAGBIO Magnolia biondii HOM05D004421 ORTHO05D005227 3.5e-34 148.3 110 66.4
CARHR268500 Cardamine hirsuta HOM05D004421 ORTHO05D005227 5.9e-34 147.5 108 69.4
A05p12050 Brassica napus HOM05D004421 ORTHO05D005227 1.0e-33 146.7 109 69.7
A10p12420 Brassica napus HOM05D004421 ORTHO05D005227 1.0e-33 146.7 109 69.7
C09p45840 Brassica napus HOM05D004421 ORTHO05D005227 1.0e-33 146.7 109 69.7
BolC9t57441H Brassica oleracea HOM05D004421 ORTHO05D005227 1.0e-33 146.7 109 69.7
TPR.G40166 Trifolium pratense HOM05D004421 ORTHO05D005227 5.0e-33 144.4 84 84.5
Zm00001eb211500 Zea mays HOM05D004421 ORTHO05D005227 5.5e-32 141.0 99 67.7
Os08g0110100 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 7.2e-32 140.6 104 64.4
HPP92_026149 Vanilla planifolia HOM05D004421 ORTHO05D005227 9.4e-32 140.2 104 63.5
Lj2g0010759 Lotus japonicus HOM05D004421 ORTHO05D005227 9.8e-29 130.2 107 63.6
CSS0048822 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 1.7e-28 129.4 109 62.4
vmacro12170 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 2.4e-27 125.6 82 76.8
BcaC03g14260 Brassica carinata HOM05D004421 ORTHO05D005227 5.4e-27 124.4 81 74.1
SEGI_06591 Sequoiadendron giganteum HOM05D004421 ORTHO05D005227 7.0e-27 124.0 102 59.8
Dinv22240 Davidia involucrata HOM05D004421 ORTHO05D005227 1.6e-26 122.9 66 86.4
BraA03t14310Z Brassica rapa HOM05D004421 ORTHO05D005227 1.7e-25 119.4 96 64.6
A08p21130 Brassica napus HOM05D004421 ORTHO05D005227 3.8e-25 118.2 96 64.6
Hma1.2p1_2381F.1_g321010 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 1.2e-23 113.2 92 65.2
FvH4_6g04610 Fragaria vesca HOM05D004421 ORTHO05D005227 1.6e-23 112.8 75 77.3
Eucgr.B01894 Eucalyptus grandis HOM05D004421 ORTHO05D005227 2.1e-23 112.5 65 80.0
Mapoly0058s0042 Marchantia polymorpha HOM05D004421 ORTHO05D005227 3.6e-23 111.7 91 60.4
BcaC03g14258 Brassica carinata HOM05D004421 ORTHO05D005227 1.4e-22 109.8 91 60.4
Os06g0339800 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 2.3e-22 109.0 97 57.7
AagrBONN_evm.TU.Sc2ySwM_344.5034 Anthoceros agrestis HOM05D004421 ORTHO05D005227 5.7e-21 104.4 91 59.3
Migut.H01800 Erythranthe guttata HOM05D004421 ORTHO05D005227 1.3e-20 103.2 56 83.9
Potri.010G076275 Populus trichocarpa HOM05D004421 ORTHO05D005227 1.3e-17 93.2 78 61.5
MD09G1112900 Malus domestica HOM05D004421 ORTHO05D005227 2.9e-17 92.0 57 73.7
Pp3c26_2200 Physcomitrium patens HOM05D004421 ORTHO05D005227 5.0e-17 91.3 87 54.0
HanXRQChr16g0506671 Helianthus annuus HOM05D004421 ORTHO05D005227 1.1e-16 90.1 58 75.9
GSVIVG01030492001 Vitis vinifera HOM05D004421 ORTHO05D005227 5.6e-16 87.8 59 71.2
Manes.12G070801 Manihot esculenta HOM05D004421 ORTHO05D005227 3.6e-15 85.1 50 76.0
SMO172G0081 Selaginella moellendorffii HOM05D004421 ORTHO05D005227 5.8e-13 77.8 96 44.8
RcHm_v2.0_Chr4g0419171 Rosa chinensis HOM05D004421 ORTHO05D005227 6.4e-12 74.3 109 43.1
Cre05.g234659 Chlamydomonas reinhardtii HOM05D004421 ORTHO05D005227 1.5e-08 63.2 91 38.5
Nn2g15167 Nelumbo nucifera HOM05D004421 ORTHO05D005227 1.2e-07 60.1 45 68.9


User provided reference genes

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