Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 0.0e+00 1768.1 903 100.0
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 0.0e+00 1587.0 901 91.3
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 0.0e+00 1321.2 901 75.2
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 3.5e-249 865.5 733 62.6
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 3.3e-239 832.4 902 51.4
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 2.3e-224 783.1 903 48.8
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 3.3e-223 779.2 904 49.2
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 6.3e-222 775.0 904 48.1
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 6.3e-222 775.0 904 48.9
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 2.2e-219 766.5 904 48.3
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 9.4e-218 761.1 904 48.5
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 1.6e-217 760.4 907 48.7
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 4.6e-217 758.8 908 47.7
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 4.6e-217 758.8 906 48.2
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 3.0e-216 756.1 940 45.9
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 5.1e-216 755.4 795 52.7
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 2.0e-215 753.4 909 47.9
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 2.0e-215 753.4 905 46.9
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 4.3e-215 752.3 904 48.0
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 5.7e-215 751.9 904 47.3
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 2.2e-214 750.0 903 47.6
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 8.2e-214 748.0 906 47.6
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 2.4e-213 746.5 910 47.3
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 3.1e-213 746.1 905 46.5
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 5.3e-213 745.3 904 45.9
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 5.3e-213 745.3 906 47.9
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 9.1e-213 744.6 904 47.5
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 2.6e-212 743.0 904 45.9
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 5.9e-212 741.9 904 47.3
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 7.7e-212 741.5 905 46.4
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 2.2e-211 740.0 906 47.4
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 1.8e-208 730.3 910 44.6
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 1.8e-208 730.3 907 46.2
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 2.3e-208 729.9 904 45.6
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 2.3e-208 729.9 905 46.1
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.5e-207 727.2 904 45.5
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 1.7e-206 723.8 931 46.4
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 4.8e-206 722.2 902 48.2
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 3.1e-205 719.5 904 45.6
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 1.2e-204 717.6 904 44.5
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 5.9e-204 715.3 907 47.1
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 1.0e-203 714.5 904 45.5
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 1.7e-203 713.8 796 50.4
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 1.4e-202 710.7 908 45.4
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 3.2e-202 709.5 907 45.2
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 9.7e-199 698.0 907 45.0
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 1.4e-197 694.1 911 44.1
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 1.3e-195 687.6 909 43.5
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 2.9e-195 686.4 925 43.4
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 3.8e-195 686.0 904 44.5
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 3.2e-194 682.9 909 44.0
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 7.2e-194 681.8 906 43.5
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 9.4e-194 681.4 857 44.3
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 6.7e-192 675.2 907 44.1
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 8.8e-192 674.9 921 42.7
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 1.5e-191 674.1 901 44.8
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 4.4e-191 672.5 909 43.3
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 9.7e-191 671.4 913 44.2
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 2.8e-190 669.8 927 43.6
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 4.8e-190 669.1 905 43.9
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 1.1e-189 667.9 909 43.0
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 3.1e-189 666.4 917 43.6
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 4.5e-188 662.5 907 43.8
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 6.5e-187 658.7 997 40.6
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 3.2e-186 656.4 913 42.9
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 2.2e-182 643.7 989 41.6
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 6.3e-182 642.1 914 42.5
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 1.0e-179 634.8 907 40.0
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 2.1e-177 627.1 934 41.2
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 1.4e-176 624.4 907 39.4
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 8.9e-176 621.7 911 40.7
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 8.9e-176 621.7 907 39.7
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 9.8e-175 618.2 911 39.4
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 9.2e-173 611.7 928 39.7
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 5.9e-172 609.0 980 39.3
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 2.5e-170 603.6 649 52.5
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 7.3e-170 602.1 910 38.8
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 2.3e-168 597.0 907 40.9
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 3.1e-168 596.7 909 40.3
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 4.0e-168 596.3 913 39.3
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 4.0e-168 596.3 908 37.9
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 5.2e-168 595.9 912 38.8
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 6.8e-168 595.5 912 38.8
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 3.4e-167 593.2 912 38.4
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 5.8e-167 592.4 912 38.5
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 3.5e-164 583.2 747 45.5
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 1.7e-163 580.9 856 41.2
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 3.9e-163 579.7 905 40.6
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 9.5e-162 575.1 905 37.6
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 8.0e-161 572.0 654 48.5
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 2.9e-158 563.5 908 37.6
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 6.4e-158 562.4 870 40.3
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 3.2e-157 560.1 754 44.0
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 3.5e-156 556.6 849 39.5
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 1.3e-155 554.7 913 38.1
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 1.5e-154 551.2 915 38.3
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 9.5e-154 548.5 753 41.6
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.2e-151 541.6 908 38.8
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 2.9e-142 510.4 913 37.1
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 6.0e-140 502.7 917 35.8
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 1.0e-139 501.9 765 40.5
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 4.3e-138 496.5 696 43.0
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 7.6e-135 485.7 713 40.1
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.7e-134 484.6 642 46.0
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 1.2e-132 478.4 647 44.2
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 1.3e-129 468.4 650 40.6
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 5.1e-115 419.9 904 33.4
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 6.9e-112 409.5 602 41.2
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 1.4e-109 401.7 679 36.5
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 6.7e-107 392.9 935 31.2
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 1.8e-104 384.8 807 33.8
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 5.3e-104 383.3 804 34.3
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 4.8e-97 360.1 811 31.1
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 6.1e-92 343.2 261 67.4
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 2.1e-84 318.2 234 70.1
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 3.6e-84 317.4 567 33.9
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 4.8e-81 307.0 239 67.4
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 9.4e-77 292.7 253 60.1
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 2.2e-70 271.6 194 72.2
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 8.5e-70 269.6 734 29.8
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 8.5e-70 269.6 734 29.8
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 1.2e-66 259.2 919 26.7
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 4.4e-66 257.3 837 27.4
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 5.7e-66 256.9 758 28.2
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 9.8e-66 256.1 424 38.4
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 8.3e-65 253.1 619 29.4
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 5.9e-63 246.9 193 65.8
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 4.7e-60 237.3 191 61.3
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 4.9e-57 227.3 198 56.1
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 4.0e-51 207.6 258 48.8
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 1.2e-50 206.1 386 33.2
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 3.7e-49 201.1 681 27.0
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 3.5e-47 194.5 138 70.3
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 6.0e-47 193.7 378 32.3
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 3.6e-44 184.5 186 52.7
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 1.1e-40 172.9 331 32.6
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 1.1e-40 172.9 544 26.3
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 2.8e-36 158.3 217 40.6
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 3.4e-34 151.4 193 45.6
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 9.9e-34 149.8 143 55.9
Nitab4.5_0002858g0090 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.1e-32 146.4 196 42.3
Lj1A1051T46 Lonicera japonica HOM05D004248 ORTHO05D004978 1.4e-32 146.0 225 39.1
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 5.4e-32 144.1 120 60.8
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 1.2e-31 142.9 203 43.3
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 1.3e-30 139.4 183 44.8
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 5.6e-29 134.0 227 37.4
Nitab4.5_0000020g0040 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.8e-27 129.0 194 39.2
HanXRQChr06g0164411 Helianthus annuus HOM05D004248 ORTHO05D004978 1.3e-25 122.9 204 36.3
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 1.6e-23 115.9 84 71.4
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 4.3e-21 107.8 96 64.6
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 1.6e-20 105.9 100 56.0
Psat3g179800 Pisum sativum HOM05D004248 ORTHO05D004978 5.3e-19 100.9 83 55.4
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 5.3e-19 100.9 186 34.4
Psat3g179840 Pisum sativum HOM05D004248 ORTHO05D004978 6.9e-19 100.5 82 56.1
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 5.8e-18 97.4 203 32.0
SEGI_14989 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 2.4e-16 92.0 350 26.3
BolC5t32083H Brassica oleracea HOM05D004248 ORTHO05D004978 2.1e-12 79.0 232 26.7
Potri.011G096201 Populus trichocarpa HOM05D004248 ORTHO05D004978 3.8e-09 68.2 114 38.6
C05p33550 Brassica napus HOM05D004248 ORTHO05D004978 6.4e-09 67.4 219 25.1
TPR.G597 Trifolium pratense HOM05D004248 ORTHO05D004978 1.8e-06 59.3 43 60.5
BraA05t20915Z Brassica rapa HOM05D000848 ORTHO05D000007 2.3e-06 58.9 117 31.6
Phvul.004G028700 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 3.0e-06 58.5 63 47.6


User provided reference genes

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