Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62030692 Chenopodium quinoa HOM05D004896 ORTHO05D006447 2.3e-60 235.3 115 100.0
AUR62030697 Chenopodium quinoa HOM05D004896 ORTHO05D006447 4.0e-57 224.6 109 100.0
AUR62036338 Chenopodium quinoa HOM05D004896 ORTHO05D006447 1.2e-56 223.0 109 99.1
Ah.12g059440 Amaranthus hybridus HOM05D004896 ORTHO05D006447 2.9e-55 218.4 109 94.5
EL10Ac5g10496 Beta vulgaris HOM05D004896 ORTHO05D006447 5.4e-54 214.2 109 94.5
EL10Ac9g21007 Beta vulgaris HOM05D004896 ORTHO05D006447 2.7e-53 211.8 109 92.7
arahy.Tifrunner.gnm1.ann1.10VWGS Arachis hypogaea HOM05D004896 ORTHO05D006447 3.0e-52 208.4 109 89.9
arahy.Tifrunner.gnm1.ann1.5ILH08 Arachis hypogaea HOM05D004896 ORTHO05D006447 3.0e-52 208.4 109 89.9
Eucgr.I01701 Eucalyptus grandis HOM05D004896 ORTHO05D006447 3.9e-52 208.0 109 89.0
Potri.001G338200 Populus trichocarpa HOM05D004896 ORTHO05D006447 5.1e-52 207.6 109 89.9
Manes.15G155100 Manihot esculenta HOM05D004896 ORTHO05D006447 1.5e-51 206.1 109 88.1
CANSAT64G0177 Cannabis sativa HOM05D004896 ORTHO05D006447 1.9e-51 205.7 109 89.9
Cpa.g.sc130.54 Carica papaya HOM05D004896 ORTHO05D006447 2.5e-51 205.3 109 89.0
Ca_01399_v3 Cicer arietinum L. HOM05D004896 ORTHO05D006447 2.5e-51 205.3 109 88.1
Ca_03861_v3 Cicer arietinum L. HOM05D004896 ORTHO05D006447 3.3e-51 204.9 109 88.1
Ciclev10015882m.g Citrus clementina HOM05D004896 ORTHO05D006447 3.3e-51 204.9 109 88.1
PGR142G1575 Punica granatum HOM05D004896 ORTHO05D006447 3.3e-51 204.9 109 88.1
Sabra16G0218900 Salix brachista HOM05D004896 ORTHO05D006447 3.3e-51 204.9 109 88.1
Prupe.3G298100 Prunus persica HOM05D004896 ORTHO05D006447 4.3e-51 204.5 109 87.2
Hund14985 Selenicereus undatus HOM05D004896 ORTHO05D006447 4.3e-51 204.5 109 88.1
CSS0017957 Camellia sinensis var. sinensis HOM05D004896 ORTHO05D006447 5.6e-51 204.1 109 88.1
CSS0036459 Camellia sinensis var. sinensis HOM05D004896 ORTHO05D006447 5.6e-51 204.1 109 88.1
Hma1.2p1_1407F.1_g281400 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 5.6e-51 204.1 109 87.2
Hma1.2p1_1484F.1_g286430 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 5.6e-51 204.1 109 87.2
Actinidia18427 Actinidia chinensis HOM05D004896 ORTHO05D006447 9.6e-51 203.4 109 88.1
Lj7A604T65 Lonicera japonica HOM05D004896 ORTHO05D006447 1.6e-50 202.6 109 86.2
MD09G1019000 Malus domestica HOM05D004896 ORTHO05D006447 1.6e-50 202.6 109 87.2
MELO3C014823.2 Cucumis melo HOM05D004896 ORTHO05D006447 2.1e-50 202.2 109 85.3
Psat3g168560 Pisum sativum HOM05D004896 ORTHO05D006447 2.1e-50 202.2 109 86.2
TPR.G1112 Trifolium pratense HOM05D004896 ORTHO05D006447 2.1e-50 202.2 109 86.2
Glyma.16G066000 Glycine max HOM05D004896 ORTHO05D006447 2.8e-50 201.8 109 86.2
Hma1.2p1_1484F.1_g286400 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 2.8e-50 201.8 109 86.2
GSVIVG01003974001 Vitis vinifera HOM05D004896 ORTHO05D006447 2.8e-50 201.8 109 88.1
Rhsim08G0046600 Rhododendron simsii HOM05D004896 ORTHO05D006447 3.6e-50 201.4 109 86.2
SGA_v2.0_scaffold135G34930 Striga asiatica HOM05D004896 ORTHO05D006447 3.6e-50 201.4 109 88.1
Gohir.A05G342400 Gossypium hirsutum HOM05D004896 ORTHO05D006447 4.8e-50 201.1 109 87.2
Gohir.D04G080440 Gossypium hirsutum HOM05D004896 ORTHO05D006447 4.8e-50 201.1 109 87.2
Gorai.012G091200 Gossypium raimondii HOM05D004896 ORTHO05D006447 4.8e-50 201.1 109 87.2
ClCG05G013000 Citrullus lanatus HOM05D004896 ORTHO05D006447 8.1e-50 200.3 109 85.3
Migut.H00045 Erythranthe guttata HOM05D004896 ORTHO05D006447 8.1e-50 200.3 109 87.2
Lj1g0027814 Lotus japonicus HOM05D004896 ORTHO05D006447 8.1e-50 200.3 109 87.2
Nn5g27187 Nelumbo nucifera HOM05D004896 ORTHO05D006447 1.1e-49 199.9 109 87.2
Nitab4.5_0001031g0180 Nicotiana tabacum HOM05D004896 ORTHO05D006447 1.1e-49 199.9 109 87.2
TAR629G1306 Trochodendron aralioides HOM05D004896 ORTHO05D006447 1.1e-49 199.9 109 86.2
HanXRQChr17g0549471 Helianthus annuus HOM05D004896 ORTHO05D006447 1.4e-49 199.5 109 87.2
Medtr0018s0290 Medicago truncatula HOM05D004896 ORTHO05D006447 1.4e-49 199.5 109 84.4
Sc03g0007130 Simmondsia chinensis HOM05D004896 ORTHO05D006447 1.4e-49 199.5 109 86.2
Hma1.2p1_0383F.1_g140290 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 1.8e-49 199.1 109 85.3
MSTRG.3120 Avicennia marina HOM05D004896 ORTHO05D006447 2.4e-49 198.7 109 85.3
Nitab4.5_0002158g0160 Nicotiana tabacum HOM05D004896 ORTHO05D006447 2.4e-49 198.7 109 86.2
COL.COLO4_29242 Corchorus olitorius HOM05D004896 ORTHO05D006447 3.1e-49 198.4 109 87.2
CAN.G473.48 Capsicum annuum HOM05D004896 ORTHO05D006447 4.0e-49 198.0 109 85.3
Lalb_Chr14g0362991 Lupinus albus HOM05D004896 ORTHO05D006447 4.0e-49 198.0 110 83.6
vmacro18309 Vaccinium macrocarpon HOM05D004896 ORTHO05D006447 4.0e-49 198.0 109 82.6
Atru.chr6.2473 Acer truncatum HOM05D004896 ORTHO05D006447 6.9e-49 197.2 109 84.4
Cc07_g00300 Coffea canephora HOM05D004896 ORTHO05D006447 6.9e-49 197.2 109 83.5
FAN09G1675 Fragaria x ananassa HOM05D004896 ORTHO05D006447 6.9e-49 197.2 109 82.6
Sed0025595 Sechium edule HOM05D004896 ORTHO05D006447 6.9e-49 197.2 109 83.5
Solyc02g093690.3 Solanum lycopersicum HOM05D004896 ORTHO05D006447 6.9e-49 197.2 109 85.3
Sopen02g038330 Solanum pennellii HOM05D004896 ORTHO05D006447 6.9e-49 197.2 109 85.3
PGSC0003DMG400012644 Solanum tuberosum HOM05D004896 ORTHO05D006447 6.9e-49 197.2 109 85.3
ATR0099G063 Amborella trichopoda HOM05D004896 ORTHO05D006447 9.0e-49 196.8 109 81.7
FvH4_6g52290 Fragaria vesca HOM05D004896 ORTHO05D006447 9.0e-49 196.8 109 82.6
FAN02G3298 Fragaria x ananassa HOM05D004896 ORTHO05D006447 9.0e-49 196.8 109 82.6
FAN05G4015 Fragaria x ananassa HOM05D004896 ORTHO05D006447 9.0e-49 196.8 109 82.6
Aqoxy1G02023 Aquilegia oxysepala HOM05D004896 ORTHO05D006447 1.2e-48 196.4 109 83.5
Lsat_1_v5_gn_0_30781 Lactuca sativa HOM05D004896 ORTHO05D006447 1.2e-48 196.4 109 86.2
BcaB06g27542 Brassica carinata HOM05D004896 ORTHO05D006447 1.5e-48 196.1 109 84.4
A04p13700 Brassica napus HOM05D004896 ORTHO05D006447 1.5e-48 196.1 109 84.4
C04p47490 Brassica napus HOM05D004896 ORTHO05D006447 1.5e-48 196.1 109 84.4
BolC4t26350H Brassica oleracea HOM05D004896 ORTHO05D006447 1.5e-48 196.1 109 84.4
BraA04t17030Z Brassica rapa HOM05D004896 ORTHO05D006447 1.5e-48 196.1 109 84.4
Haze_14796 Corylus avellana HOM05D004896 ORTHO05D006447 1.5e-48 196.1 109 84.4
Dinv33394 Davidia involucrata HOM05D004896 ORTHO05D006447 1.5e-48 196.1 109 84.4
Duzib264G0232 Durio zibethinus HOM05D004896 ORTHO05D006447 1.5e-48 196.1 109 85.3
Nitab4.5_0002158g0260 Nicotiana tabacum HOM05D002474 ORTHO05D007142 1.5e-48 196.1 109 86.2
Phvul.008G145713 Phaseolus vulgaris HOM05D004896 ORTHO05D006447 1.5e-48 196.1 109 85.3
RcHm_v2.0_Chr2g0173821 Rosa chinensis HOM05D004896 ORTHO05D006447 1.5e-48 196.1 109 82.6
Thecc.04G026600 Theobroma cacao HOM05D004896 ORTHO05D006447 2.0e-48 195.7 109 84.4
VMungo1080G0372 Vigna mungo HOM05D004896 ORTHO05D006447 2.0e-48 195.7 109 85.3
MBI19_g04325_MAGBIO Magnolia biondii HOM05D004896 ORTHO05D006447 2.6e-48 195.3 109 84.4
Cfa007299 Carpinus fangiana HOM05D004896 ORTHO05D006447 3.4e-48 194.9 109 83.5
FAN14G4168 Fragaria x ananassa HOM05D004896 ORTHO05D006447 4.4e-48 194.5 109 81.7
QL02p073334 Quercus lobata HOM05D004896 ORTHO05D006447 9.9e-48 193.4 109 80.7
Actinidia16947 Actinidia chinensis HOM05D004896 ORTHO05D006447 1.3e-47 193.0 109 84.4
CDE07G0249 Ceratophyllum demersum HOM05D004896 ORTHO05D006447 2.2e-47 192.2 110 82.7
HPP92_020467 Vanilla planifolia HOM05D004896 ORTHO05D006447 2.2e-47 192.2 109 82.6
HPP92_026167 Vanilla planifolia HOM05D004896 ORTHO05D006447 2.2e-47 192.2 109 82.6
CiPaw.04G032200 Carya illinoinensis HOM05D004896 ORTHO05D006447 3.8e-47 191.4 109 83.5
CsaV3_3G027540 Cucumis sativus L. HOM05D004896 ORTHO05D006447 3.8e-47 191.4 109 81.7
ECA246G3787 Erigeron canadensis HOM05D004896 ORTHO05D006447 3.8e-47 191.4 109 83.5
THA.LOC104825307 Tarenaya hassleriana HOM05D004896 ORTHO05D006447 3.8e-47 191.4 109 83.5
DCAR_021752 Daucus carota HOM05D004896 ORTHO05D006447 4.9e-47 191.0 109 82.6
unitig_0.g536 Utricularia gibba HOM05D004896 ORTHO05D006447 4.9e-47 191.0 110 81.8
TWI56G0223 Tripterygium wilfordii HOM05D004896 ORTHO05D006447 6.4e-47 190.7 109 81.7
PSO675G8471 Papaver somniferum HOM05D004896 ORTHO05D006447 8.4e-47 190.3 109 82.6
AL7G49080 Arabidopsis lyrata HOM05D004896 ORTHO05D006447 1.9e-46 189.1 109 82.6
AT5G40660 Arabidopsis thaliana HOM05D004896 ORTHO05D006447 1.9e-46 189.1 109 82.6
CARHR261290 Cardamine hirsuta HOM05D004896 ORTHO05D006447 1.9e-46 189.1 109 81.7
PSO541G0959 Papaver somniferum HOM05D004896 ORTHO05D006447 1.9e-46 189.1 109 81.7
Aa31LG9G960 Aethionema arabicum HOM05D004896 ORTHO05D006447 3.2e-46 188.3 109 82.6
Os07g0644000 Oryza sativa ssp. japonica HOM05D004896 ORTHO05D006447 4.2e-46 188.0 109 79.8
Carub.0007s3482 Capsella rubella HOM05D004896 ORTHO05D006447 7.1e-46 187.2 109 81.7
SHI03827 Sapria himalayana HOM05D004896 ORTHO05D006447 7.1e-46 187.2 108 78.7
Atru.chr4.450 Acer truncatum HOM05D004896 ORTHO05D006447 9.3e-46 186.8 109 80.7
FvH4_6g52310 Fragaria vesca HOM05D004896 ORTHO05D006447 9.3e-46 186.8 109 78.9
Atru.chr3.2666 Acer truncatum HOM05D004896 ORTHO05D006447 1.2e-45 186.4 109 80.7
Thhalv10027828m.g Eutrema salsugineum HOM05D004896 ORTHO05D006447 2.1e-45 185.7 109 80.7
Sp7g01200 Schrenkiella parvula HOM05D004896 ORTHO05D006447 2.7e-45 185.3 109 80.7
Zm00001eb329190 Zea mays HOM05D004896 ORTHO05D006447 1.3e-44 183.0 109 77.1
CiPaw.03G049000 Carya illinoinensis HOM05D004896 ORTHO05D006447 1.8e-41 172.6 109 77.1
SEGI_10618 Sequoiadendron giganteum HOM05D004896 ORTHO05D006447 5.8e-40 167.5 109 70.6
RcHm_v2.0_Chr2g0174241 Rosa chinensis HOM05D004896 ORTHO05D006447 7.1e-38 160.6 109 70.6
FAN14G0298 Fragaria x ananassa HOM05D004896 ORTHO05D006447 1.3e-34 149.8 109 67.0
Peaxi162Scf00420g00251 Petunia axillaris HOM05D004896 ORTHO05D006447 7.4e-27 124.0 109 60.6
Atru.chr2.3725 Acer truncatum HOM05D004896 ORTHO05D006447 2.8e-26 122.1 65 87.7
Atru.chr1.36 Acer truncatum HOM05D004896 ORTHO05D006447 1.1e-25 120.2 65 86.2
Atru.chr2.563 Acer truncatum HOM05D004866 ORTHO05D005716 2.4e-25 119.0 65 86.2
Atru.chr11.190 Acer truncatum HOM05D004896 ORTHO05D006447 3.1e-25 118.6 65 84.6
Atru.chr7.121 Acer truncatum HOM05D005216 ORTHO05D006453 2.0e-24 115.9 65 84.6
Pp3c2_19250 Physcomitrium patens HOM05D004896 ORTHO05D006447 2.6e-24 115.5 110 50.9
SGA_v2.0_scaffold18G08247 Striga asiatica HOM05D004896 ORTHO05D006447 7.6e-24 114.0 65 83.1
CDE12G0511 Ceratophyllum demersum HOM05D004896 ORTHO05D006447 1.3e-23 113.2 65 81.5
Oeu064389.1 Olea europaea HOM05D004896 ORTHO05D006447 1.3e-23 113.2 65 80.0
SMO200G0187 Selaginella moellendorffii HOM05D004896 ORTHO05D006447 8.4e-23 110.5 103 53.4
AagrBONN_evm.TU.Sc2ySwM_362.2811 Anthoceros agrestis HOM05D004896 ORTHO05D006447 3.0e-20 102.1 108 44.4
BcaC04g20647 Brassica carinata HOM05D004896 ORTHO05D006447 5.1e-20 101.3 52 90.4
C09p41080 Brassica napus HOM05D004896 ORTHO05D028223 5.1e-20 101.3 52 90.4
BolC9t56987H Brassica oleracea HOM05D004896 ORTHO05D028223 5.1e-20 101.3 52 90.4
BraA05t20477Z Brassica rapa HOM05D004896 ORTHO05D024046 2.5e-19 99.0 52 86.5
Mapoly0004s0068 Marchantia polymorpha HOM05D004896 ORTHO05D006447 4.3e-19 98.2 89 51.7
BcaB01g05885 Brassica carinata HOM05D004896 ORTHO05D024046 2.8e-18 95.5 50 88.0
BolC7t42010H Brassica oleracea HOM05D004896 ORTHO05D028223 2.8e-18 95.5 52 86.5
MCO13G572 Micromonas commoda HOM05D004896 ORTHO05D006447 1.8e-17 92.8 107 44.9
A05p15620 Brassica napus HOM05D004896 ORTHO05D024046 2.4e-17 92.4 47 89.4
BcaC01g04583 Brassica carinata HOM05D004896 ORTHO05D006447 7.7e-16 87.4 47 87.2
PRCOL_00001693 Prasinoderma coloniale HOM05D004896 ORTHO05D006447 1.3e-15 86.7 95 44.2
Sed0012039 Sechium edule HOM05D004896 ORTHO05D006447 7.2e-14 80.9 109 46.8
CBR_g4059 Chara braunii HOM05D004896 ORTHO05D006447 1.2e-13 80.1 104 40.4
Atru.chr1.2050 Acer truncatum HOM05D004896 ORTHO05D006447 4.6e-13 78.2 41 87.8
TAR628G1566 Trochodendron aralioides HOM05D004896 ORTHO05D006447 3.7e-10 68.6 46 67.4
Actinidia35788 Actinidia chinensis HOM05D004896 ORTHO05D006447 4.8e-10 68.2 45 75.6
MD17G1019600 Malus domestica HOM05D004896 ORTHO05D006447 1.8e-09 66.2 33 90.9
Cre17.g726250 Chlamydomonas reinhardtii HOM05D004896 ORTHO05D006447 4.2e-06 55.1 74 39.2
Cc06_g20980 Coffea canephora HOM05D004896 ORTHO05D006447 4.2e-06 55.1 34 73.5


User provided reference genes

Program Settings