Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62030596 Chenopodium quinoa HOM05D000405 ORTHO05D000712 3.4e-76 288.5 174 100.0
AUR62024943 Chenopodium quinoa HOM05D000405 ORTHO05D000712 3.6e-57 225.3 180 70.0
CiPaw.02G199000 Carya illinoinensis HOM05D000405 ORTHO05D000712 5.8e-15 85.1 190 31.6
vmacro06899 Vaccinium macrocarpon HOM05D000405 ORTHO05D000712 2.2e-14 83.2 174 32.2
Ah.12g064420 Amaranthus hybridus HOM05D000405 ORTHO05D000712 4.9e-14 82.0 158 38.6
ECA238G4392 Erigeron canadensis HOM05D000405 ORTHO05D000712 6.4e-14 81.6 177 34.5
Hma1.2p1_0264F.1_g106020 Hydrangea macrophylla HOM05D000405 ORTHO05D000712 6.4e-14 81.6 182 35.7
Hma1.2p1_1805F.1_g303250 Hydrangea macrophylla HOM05D000405 ORTHO05D000712 6.4e-14 81.6 183 36.1
EL10Ac2g02657 Beta vulgaris HOM05D000405 ORTHO05D000712 1.1e-13 80.9 36 94.4
Dinv21852 Davidia involucrata HOM05D000405 ORTHO05D000712 9.2e-13 77.8 181 32.6
Sc10g0003030 Simmondsia chinensis HOM05D000405 ORTHO05D000712 9.2e-13 77.8 174 33.9
Manes.10G002100 Manihot esculenta HOM05D000405 ORTHO05D000712 2.0e-12 76.6 173 31.2
Sed0020568 Sechium edule HOM05D000405 ORTHO05D000712 2.7e-12 76.3 176 31.2
VMungo1309G1479 Vigna mungo HOM05D000405 ORTHO05D000712 2.7e-12 76.3 184 33.2
Lalb_Chr08g0239221 Lupinus albus HOM05D000405 ORTHO05D000712 3.5e-12 75.9 184 32.1
ClCG07G005220 Citrullus lanatus HOM05D000405 ORTHO05D000712 4.6e-12 75.5 174 39.1
MELO3C020162.2 Cucumis melo HOM05D000405 ORTHO05D000712 4.6e-12 75.5 174 39.1
Glyma.06G142100 Glycine max HOM05D000405 ORTHO05D000712 4.6e-12 75.5 190 31.6
Gohir.D04G011800 Gossypium hirsutum HOM05D000405 ORTHO05D000712 4.6e-12 75.5 164 30.5
Actinidia31632 Actinidia chinensis HOM05D000405 ORTHO05D000712 6.0e-12 75.1 181 36.5
MD01G1168500 Malus domestica HOM05D000405 ORTHO05D000974 6.0e-12 75.1 42 71.4
MD07G1234600 Malus domestica HOM05D000405 ORTHO05D000712 6.0e-12 75.1 179 31.8
Manes.07G142500 Manihot esculenta HOM05D000405 ORTHO05D000712 6.0e-12 75.1 175 33.7
FAN10G1702 Fragaria x ananassa HOM05D000405 ORTHO05D000712 7.8e-12 74.7 181 30.4
CiPaw.01G306900 Carya illinoinensis HOM05D000405 ORTHO05D000712 1.0e-11 74.3 204 31.4
FvH4_7g26020 Fragaria vesca HOM05D000405 ORTHO05D000712 1.0e-11 74.3 183 31.7
FAN06G2066 Fragaria x ananassa HOM05D000405 ORTHO05D000712 1.0e-11 74.3 183 31.7
Phvul.009G043200 Phaseolus vulgaris HOM05D000405 ORTHO05D000712 1.0e-11 74.3 180 31.7
Haze_17364 Corylus avellana HOM05D000405 ORTHO05D000712 1.3e-11 73.9 41 70.7
Gorai.012G014000 Gossypium raimondii HOM05D000405 ORTHO05D000712 1.3e-11 73.9 164 29.9
Actinidia13642 Actinidia chinensis HOM05D000405 ORTHO05D000712 1.7e-11 73.6 173 32.4
Duzib106G0853 Durio zibethinus HOM05D000405 ORTHO05D000712 1.7e-11 73.6 198 36.4
QL08p065017 Quercus lobata HOM05D000405 ORTHO05D000712 1.7e-11 73.6 41 73.2
Ciclev10033384m.g Citrus clementina HOM05D000405 ORTHO05D000712 3.0e-11 72.8 203 28.6
Migut.F00573 Erythranthe guttata HOM05D000405 ORTHO05D000712 3.0e-11 72.8 186 32.8
MBI03_g09114_MAGBIO Magnolia biondii HOM05D000405 ORTHO05D000712 3.0e-11 72.8 41 70.7
Potri.019G059300 Populus trichocarpa HOM05D000405 ORTHO05D000712 3.0e-11 72.8 189 31.7
Hund13442 Selenicereus undatus HOM05D000405 ORTHO05D000712 3.0e-11 72.8 35 85.7
GSVIVG01032662001 Vitis vinifera HOM05D000405 ORTHO05D000712 3.0e-11 72.8 181 29.8
CsaV3_5G011060 Cucumis sativus L. HOM05D000405 ORTHO05D000712 3.9e-11 72.4 179 38.5
Atru.chr12.203 Acer truncatum HOM05D000405 ORTHO05D000712 5.0e-11 72.0 188 35.1
CANSAT56G3148 Cannabis sativa HOM05D000405 ORTHO05D000712 5.0e-11 72.0 38 76.3
Cfa001202 Carpinus fangiana HOM05D000405 ORTHO05D000712 5.0e-11 72.0 187 32.1
FAN03G2331 Fragaria x ananassa HOM05D000405 ORTHO05D000712 5.0e-11 72.0 181 30.4
Thecc.10G184200 Theobroma cacao HOM05D000405 ORTHO05D000712 5.0e-11 72.0 198 28.3
Cpa.g.sc19.45 Carica papaya HOM05D000405 ORTHO05D000712 6.6e-11 71.6 176 30.7
Ca_05518_v3 Cicer arietinum L. HOM05D000405 ORTHO05D000712 6.6e-11 71.6 38 76.3
Eucgr.J00107 Eucalyptus grandis HOM05D000405 ORTHO05D000712 6.6e-11 71.6 196 39.3
HanXRQChr08g0216821 Helianthus annuus HOM05D000405 ORTHO05D000712 6.6e-11 71.6 42 64.3
CAN.G169.10 Capsicum annuum HOM05D000405 ORTHO05D000712 8.6e-11 71.2 38 73.7
Prupe.2G264900 Prunus persica HOM05D000405 ORTHO05D000712 8.6e-11 71.2 185 32.4
RcHm_v2.0_Chr1g0372431 Rosa chinensis HOM05D000405 ORTHO05D000712 8.6e-11 71.2 41 68.3
FAN01G0759 Fragaria x ananassa HOM05D000405 ORTHO05D000712 1.1e-10 70.9 181 30.4
Glyma.04G223200 Glycine max HOM05D000405 ORTHO05D000712 1.1e-10 70.9 38 73.7
CSS0008438 Camellia sinensis var. sinensis HOM05D000405 ORTHO05D000712 1.5e-10 70.5 34 82.4
Lsat_1_v5_gn_2_126380 Lactuca sativa HOM05D000405 ORTHO05D000712 1.5e-10 70.5 175 30.9
LjContig00408g0018706 Lotus japonicus HOM05D000405 ORTHO05D000712 1.5e-10 70.5 39 76.9
THA.LOC104814137 Tarenaya hassleriana HOM05D000405 ORTHO05D000712 1.5e-10 70.5 41 68.3
TWI73G1184 Tripterygium wilfordii HOM05D000405 ORTHO05D000712 1.5e-10 70.5 164 31.1
Dinv34495 Davidia involucrata HOM05D000405 ORTHO05D000974 1.9e-10 70.1 36 77.8
Lj8A53G91 Lonicera japonica HOM05D000405 ORTHO05D000712 1.9e-10 70.1 42 66.7
Lalb_Chr10g0102811 Lupinus albus HOM05D000405 ORTHO05D000712 1.9e-10 70.1 37 75.7
PGR044G0065 Punica granatum HOM05D000405 ORTHO05D000712 1.9e-10 70.1 40 72.5
TPR.G27043 Trifolium pratense HOM05D000405 ORTHO05D000712 1.9e-10 70.1 32 90.6
TAR369G0279 Trochodendron aralioides HOM05D000405 ORTHO05D000712 1.9e-10 70.1 38 73.7
TAR369G0933 Trochodendron aralioides HOM05D000405 ORTHO05D000712 1.9e-10 70.1 38 73.7
SalBow3G2021 Salvia bowleyana HOM05D000405 ORTHO05D000712 2.5e-10 69.7 191 27.7
DCAR_020153 Daucus carota HOM05D000405 ORTHO05D000712 3.3e-10 69.3 173 30.6
Oeu018744.1 Olea europaea HOM05D000405 ORTHO05D000712 4.3e-10 68.9 178 29.2
Psat2g063040 Pisum sativum HOM05D000405 ORTHO05D000712 4.3e-10 68.9 39 76.9
MBI15_g39388_MAGBIO Magnolia biondii HOM05D000405 ORTHO05D000712 5.6e-10 68.6 37 70.3
Nitab4.5_0003473g0030 Nicotiana tabacum HOM05D000405 ORTHO05D000712 5.6e-10 68.6 175 39.4
RcHm_v2.0_Chr5g0080371 Rosa chinensis HOM05D000092 ORTHO05D000042 5.6e-10 68.6 41 63.4
Solyc06g048870.3 Solanum lycopersicum HOM05D000405 ORTHO05D000712 5.6e-10 68.6 38 68.4
Sopen06g015190 Solanum pennellii HOM05D000405 ORTHO05D000712 5.6e-10 68.6 38 68.4
Eucgr.G03144 Eucalyptus grandis HOM05D000405 ORTHO05D000712 7.3e-10 68.2 42 61.9
Medtr5g067680 Medicago truncatula HOM05D000405 ORTHO05D000712 7.3e-10 68.2 32 87.5
Sed0006445 Sechium edule HOM05D000405 ORTHO05D000712 7.3e-10 68.2 38 73.7
Aqoxy1G01253 Aquilegia oxysepala HOM05D000405 ORTHO05D000712 9.5e-10 67.8 199 30.2
Gohir.A05G404100 Gossypium hirsutum HOM05D000405 ORTHO05D000712 9.5e-10 67.8 37 67.6
Peaxi162Scf00739g00429 Petunia axillaris HOM05D000405 ORTHO05D000712 9.5e-10 67.8 34 76.5
RhsimUnG0080500 Rhododendron simsii HOM05D000101 ORTHO05D002559 9.5e-10 67.8 38 71.1
RhsimUnG0083000 Rhododendron simsii HOM05D000405 ORTHO05D000712 9.5e-10 67.8 38 71.1
THA.LOC104824597 Tarenaya hassleriana HOM05D000405 ORTHO05D000712 9.5e-10 67.8 42 61.9
Duzib114G0822 Durio zibethinus HOM05D000405 ORTHO05D000712 1.6e-09 67.0 193 28.5
Potri.013G090400 Populus trichocarpa HOM05D000405 ORTHO05D000712 1.6e-09 67.0 177 28.2
Peaxi162Scf00304g00620 Petunia axillaris HOM05D000405 ORTHO05D000712 2.1e-09 66.6 38 71.1
Rhsim11G0120500 Rhododendron simsii HOM05D000101 ORTHO05D002559 2.1e-09 66.6 38 68.4
Oeu006063.1 Olea europaea HOM05D000405 ORTHO05D000712 3.6e-09 65.9 37 64.9
PSO017G4219 Papaver somniferum HOM05D000405 ORTHO05D000712 4.7e-09 65.5 38 68.4
PSO170G5661 Papaver somniferum HOM05D000405 ORTHO05D000712 4.7e-09 65.5 38 68.4
PGSC0003DMG400008776 Solanum tuberosum HOM05D000405 ORTHO05D000712 6.2e-09 65.1 175 34.3
Os05g0321900 Oryza sativa ssp. japonica HOM05D000405 ORTHO05D000712 1.1e-08 64.3 36 69.4
arahy.Tifrunner.gnm1.ann1.1JA0E6 Arachis hypogaea HOM05D000405 ORTHO05D000712 1.8e-08 63.5 38 71.1
arahy.Tifrunner.gnm1.ann1.G7PB2P Arachis hypogaea HOM05D000405 ORTHO05D000712 1.8e-08 63.5 38 71.1
Nn5g26833 Nelumbo nucifera HOM05D000405 ORTHO05D000712 1.8e-08 63.5 165 30.9
Nitab4.5_0000171g0180 Nicotiana tabacum HOM05D000405 ORTHO05D000712 1.8e-08 63.5 35 77.1
MSTRG.27257 Avicennia marina HOM05D000405 ORTHO05D000712 2.3e-08 63.2 179 28.5
Carub.0004s2302 Capsella rubella HOM05D000405 ORTHO05D000712 2.3e-08 63.2 42 59.5
COL.COLO4_19463 Corchorus olitorius HOM05D000405 ORTHO05D000712 2.3e-08 63.2 32 71.9
Thhalv10017926m.g Eutrema salsugineum HOM05D000405 ORTHO05D000712 3.1e-08 62.8 42 59.5
Oeu063994.1 Olea europaea HOM05D000405 ORTHO05D000712 3.1e-08 62.8 200 28.5
Nn2g10280 Nelumbo nucifera HOM05D000405 ORTHO05D000712 4.0e-08 62.4 187 30.5
Aa31LG10G11280 Aethionema arabicum HOM05D000405 ORTHO05D000712 5.2e-08 62.0 41 58.5
AT2G40740 Arabidopsis thaliana HOM05D000405 ORTHO05D000712 6.8e-08 61.6 42 57.1
PGR142G0939 Punica granatum HOM05D000405 ORTHO05D000974 8.9e-08 61.2 36 61.1
HPP92_001433 Vanilla planifolia HOM05D000405 ORTHO05D000712 8.9e-08 61.2 41 56.1
A03p22900 Brassica napus HOM05D000405 ORTHO05D000712 1.2e-07 60.8 42 57.1
C03p27150 Brassica napus HOM05D000405 ORTHO05D000712 1.2e-07 60.8 42 57.1
BolC3t15096H Brassica oleracea HOM05D000405 ORTHO05D000712 1.2e-07 60.8 42 57.1
BraA03t11514Z Brassica rapa HOM05D000405 ORTHO05D000712 1.2e-07 60.8 42 57.1
Cc02_g05280 Coffea canephora HOM05D000405 ORTHO05D000712 1.2e-07 60.8 29 75.9
Sp4g23050 Schrenkiella parvula HOM05D000405 ORTHO05D000712 1.5e-07 60.5 42 57.1
BcaC01g05383 Brassica carinata HOM05D000405 ORTHO05D000712 2.0e-07 60.1 41 58.5
C04p68500 Brassica napus HOM05D000405 ORTHO05D000712 2.0e-07 60.1 42 59.5
BolC4t28350H Brassica oleracea HOM05D000405 ORTHO05D000712 2.0e-07 60.1 42 59.5
TAR633G1594 Trochodendron aralioides HOM05D000405 ORTHO05D000712 2.0e-07 60.1 36 69.4
CARHR135830 Cardamine hirsuta HOM05D000405 ORTHO05D000712 3.4e-07 59.3 43 58.1
HanXRQChr14g0460661 Helianthus annuus HOM05D000405 ORTHO05D000974 3.4e-07 59.3 29 75.9
BcaB06g29171 Brassica carinata HOM05D000405 ORTHO05D000712 4.4e-07 58.9 43 58.1
AL4G38600 Arabidopsis lyrata HOM05D000405 ORTHO05D000712 5.8e-07 58.5 36 63.9
BcaC02g07331 Brassica carinata HOM05D000405 ORTHO05D000712 5.8e-07 58.5 42 57.1
BcaC02g07332 Brassica carinata HOM05D000405 ORTHO05D000712 5.8e-07 58.5 42 57.1
A04p31110 Brassica napus HOM05D000405 ORTHO05D000712 5.8e-07 58.5 42 57.1
BraA04t18566Z Brassica rapa HOM05D000405 ORTHO05D000712 5.8e-07 58.5 42 57.1
BcaB02g08370 Brassica carinata HOM05D000405 ORTHO05D000712 9.8e-07 57.8 36 66.7
A04p03330 Brassica napus HOM05D000405 ORTHO05D000712 1.3e-06 57.4 36 63.9
BraA04t16104Z Brassica rapa HOM05D000405 ORTHO05D000712 1.3e-06 57.4 36 63.9
SGA_v2.0_scaffold60G20884 Striga asiatica HOM05D000405 ORTHO05D000712 1.7e-06 57.0 29 72.4
C04p36020 Brassica napus HOM05D000405 ORTHO05D000712 2.9e-06 56.2 36 61.1
BolC4t25195H Brassica oleracea HOM05D000405 ORTHO05D000712 2.9e-06 56.2 36 61.1
BcaC08g44587 Brassica carinata HOM05D000405 ORTHO05D000712 3.7e-06 55.8 41 53.7
C06p20570 Brassica napus HOM05D000405 ORTHO05D000712 3.7e-06 55.8 41 53.7
BolC6t37240H Brassica oleracea HOM05D000405 ORTHO05D000712 3.7e-06 55.8 41 53.7
BcaC02g09836 Brassica carinata HOM05D000405 ORTHO05D000712 6.4e-06 55.1 33 63.6
Carub.0005s2317 Capsella rubella HOM05D000405 ORTHO05D000712 8.3e-06 54.7 41 56.1
Nitab4.5_0004506g0060 Nicotiana tabacum HOM05D001772 ORTHO05D008903 8.3e-06 54.7 39 61.5
Zm00001eb285050 Zea mays HOM05D000405 ORTHO05D000712 8.3e-06 54.7 28 67.9


User provided reference genes

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