Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62030497 Chenopodium quinoa HOM05D004421 ORTHO05D005227 3.6e-55 218.0 109 100.0
AUR62030797 Chenopodium quinoa HOM05D004421 ORTHO05D005227 5.1e-54 214.2 109 97.2
EL10Ac5g12553 Beta vulgaris HOM05D004421 ORTHO05D005227 1.1e-45 186.4 100 92.0
Ah.12g058680 Amaranthus hybridus HOM05D004421 ORTHO05D005227 2.0e-45 185.7 109 88.1
Hma1.2p1_0445F.1_g154450 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 3.3e-45 184.9 108 84.3
Lalb_Chr10g0105671 Lupinus albus HOM05D004421 ORTHO05D005227 7.4e-45 183.7 107 83.2
ECA236G3405 Erigeron canadensis HOM05D004421 ORTHO05D005227 9.7e-45 183.3 108 80.6
LjContig00564g0020145 Lotus japonicus HOM05D004421 ORTHO05D005227 2.2e-44 182.2 100 85.0
LjContig00564g0024160 Lotus japonicus HOM05D004421 ORTHO05D005227 2.2e-44 182.2 100 85.0
CANSAT64G1364 Cannabis sativa HOM05D004421 ORTHO05D005227 2.8e-44 181.8 101 85.1
HanXRQChr04g0126911 Helianthus annuus HOM05D004421 ORTHO05D005227 2.8e-44 181.8 100 86.0
Ca_23316_v3 Cicer arietinum L. HOM05D004421 ORTHO05D005227 3.7e-44 181.4 102 85.3
Phvul.008G212200 Phaseolus vulgaris HOM05D004421 ORTHO05D005227 4.8e-44 181.0 102 82.4
arahy.Tifrunner.gnm1.ann1.J4LN0V Arachis hypogaea HOM05D004421 ORTHO05D005227 6.3e-44 180.6 107 80.4
Glyma.14G047100 Glycine max HOM05D004421 ORTHO05D005227 6.3e-44 180.6 102 82.4
LjContig00564g0000485 Lotus japonicus HOM05D004421 ORTHO05D005227 6.3e-44 180.6 100 84.0
LjContig00564g0024311 Lotus japonicus HOM05D004421 ORTHO05D005227 6.3e-44 180.6 100 84.0
arahy.Tifrunner.gnm1.ann1.BKRM87 Arachis hypogaea HOM05D004421 ORTHO05D005227 8.2e-44 180.3 107 80.4
Oeu013122.1 Olea europaea HOM05D004421 ORTHO05D005227 8.2e-44 180.3 108 81.5
VMungo0647G1664 Vigna mungo HOM05D004421 ORTHO05D005227 8.2e-44 180.3 102 82.4
Medtr8g016300 Medicago truncatula HOM05D004421 ORTHO05D005227 1.1e-43 179.9 100 87.0
Prupe.3G211700 Prunus persica HOM05D004421 ORTHO05D005227 1.1e-43 179.9 100 85.0
TWI36G1565 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 1.4e-43 179.5 108 81.5
Manes.13G067100 Manihot esculenta HOM05D004421 ORTHO05D005227 1.8e-43 179.1 100 84.0
ClCG02G009100 Citrullus lanatus HOM05D004421 ORTHO05D005227 2.4e-43 178.7 100 85.0
CsaV3_2G034620 Cucumis sativus L. HOM05D004421 ORTHO05D005227 2.4e-43 178.7 109 80.7
Lsat_1_v5_gn_7_92700 Lactuca sativa HOM05D004421 ORTHO05D005227 2.4e-43 178.7 108 80.6
Medtr8g099150 Medicago truncatula HOM05D004421 ORTHO05D005227 2.4e-43 178.7 100 86.0
GSVIVG01036899001 Vitis vinifera HOM05D004421 ORTHO05D005227 2.4e-43 178.7 109 78.9
Peaxi162Scf00047g00850 Petunia axillaris HOM05D004421 ORTHO05D005227 3.1e-43 178.3 107 83.2
Sed0012667 Sechium edule HOM05D004421 ORTHO05D005227 3.1e-43 178.3 100 85.0
Hma1.2p1_0177F.1_g077900 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 4.1e-43 177.9 108 79.6
Hma1.2p1_0177F.1_g077905 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 4.1e-43 177.9 108 79.6
Psat4g220560 Pisum sativum HOM05D004421 ORTHO05D005227 5.3e-43 177.6 100 85.0
Nitab4.5_0000138g0020 Nicotiana tabacum HOM05D004421 ORTHO05D005227 9.1e-43 176.8 100 84.0
Potri.002G225600 Populus trichocarpa HOM05D004421 ORTHO05D005227 9.1e-43 176.8 100 83.0
SalBow3G0779 Salvia bowleyana HOM05D004421 ORTHO05D005227 9.1e-43 176.8 109 80.7
MSTRG.14457 Avicennia marina HOM05D004421 ORTHO05D005227 1.2e-42 176.4 108 78.7
Nitab4.5_0005588g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.2e-42 176.4 107 80.4
TWI79G1637 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 1.2e-42 176.4 108 80.6
Glyma.02G269800 Glycine max HOM05D004421 ORTHO05D005227 1.6e-42 176.0 102 80.4
Gorai.005G241500 Gossypium raimondii HOM05D004421 ORTHO05D005227 1.6e-42 176.0 98 83.7
PGR042G0750 Punica granatum HOM05D004421 ORTHO05D005227 1.6e-42 176.0 98 85.7
TPR.G7933 Trifolium pratense HOM05D004421 ORTHO05D005227 1.6e-42 176.0 100 85.0
Thecc.07G030200 Theobroma cacao HOM05D004421 ORTHO05D005227 2.0e-42 175.6 108 78.7
Haze_12777 Corylus avellana HOM05D004421 ORTHO05D005227 2.6e-42 175.3 109 78.0
Cpa.g.sc12.255 Carica papaya HOM05D004421 ORTHO05D005227 3.5e-42 174.9 100 84.0
Eucgr.B01010 Eucalyptus grandis HOM05D004421 ORTHO05D005227 3.5e-42 174.9 100 82.0
MSTRG.12990 Avicennia marina HOM05D004421 ORTHO05D005227 4.5e-42 174.5 108 76.9
Cfa014325 Carpinus fangiana HOM05D004421 ORTHO05D005227 4.5e-42 174.5 100 84.0
FAN02G1632 Fragaria x ananassa HOM05D004421 ORTHO05D005227 4.5e-42 174.5 109 79.8
CAN.G149.31 Capsicum annuum HOM05D004421 ORTHO05D005227 5.9e-42 174.1 98 84.7
FvH4_6g42460 Fragaria vesca HOM05D004421 ORTHO05D005227 5.9e-42 174.1 109 79.8
FAN05G5559 Fragaria x ananassa HOM05D004421 ORTHO05D005227 5.9e-42 174.1 109 79.8
FAN09G1846 Fragaria x ananassa HOM05D004421 ORTHO05D005227 5.9e-42 174.1 109 79.8
FAN14G1774 Fragaria x ananassa HOM05D004421 ORTHO05D005227 5.9e-42 174.1 109 79.8
RcHm_v2.0_Chr2g0158361 Rosa chinensis HOM05D004421 ORTHO05D005227 5.9e-42 174.1 109 79.8
TPR.G1800 Trifolium pratense HOM05D004421 ORTHO05D005227 5.9e-42 174.1 100 83.0
TAR629G1061 Trochodendron aralioides HOM05D004421 ORTHO05D005227 5.9e-42 174.1 109 78.9
Ciclev10009985m.g Citrus clementina HOM05D004421 ORTHO05D005227 7.7e-42 173.7 98 84.7
ECA234G2260 Erigeron canadensis HOM05D004421 ORTHO05D005227 7.7e-42 173.7 98 85.7
Potri.014G157400 Populus trichocarpa HOM05D004421 ORTHO05D005227 7.7e-42 173.7 100 81.0
unitig_748.g8294 Utricularia gibba HOM05D004421 ORTHO05D005227 7.7e-42 173.7 99 82.8
Gohir.A03G192600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 1.0e-41 173.3 98 82.7
Oeu054302.1 Olea europaea HOM05D004421 ORTHO05D005227 1.0e-41 173.3 108 79.6
Sabra02G0172700 Salix brachista HOM05D004421 ORTHO05D005227 1.0e-41 173.3 100 81.0
Peaxi162Scf00149g00049 Petunia axillaris HOM05D004421 ORTHO05D005227 1.3e-41 172.9 107 80.4
Rhsim04G0051300 Rhododendron simsii HOM05D004421 ORTHO05D005227 1.3e-41 172.9 108 80.6
vmacro09354 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 1.3e-41 172.9 107 79.4
CAN.G358.76 Capsicum annuum HOM05D004421 ORTHO05D005227 1.7e-41 172.6 98 83.7
CSS0000360 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 2.2e-41 172.2 100 82.0
CSS0029217 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 2.2e-41 172.2 100 82.0
SHI33915 Sapria himalayana HOM05D004421 ORTHO05D005227 2.2e-41 172.2 108 75.9
Sc12g0002130 Simmondsia chinensis HOM05D004421 ORTHO05D005227 2.2e-41 172.2 109 77.1
Aqoxy7G01112 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 2.9e-41 171.8 104 80.8
CDE04G3645 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 2.9e-41 171.8 98 84.7
unitig_32.g10858 Utricularia gibba HOM05D004421 ORTHO05D005227 2.9e-41 171.8 99 82.8
Nitab4.5_0007533g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 3.8e-41 171.4 98 83.7
Sopen02g017940 Solanum pennellii HOM05D004421 ORTHO05D005227 3.8e-41 171.4 98 84.7
PGSC0003DMG400010437 Solanum tuberosum HOM05D004421 ORTHO05D005227 3.8e-41 171.4 98 84.7
CiPaw.08G089000 Carya illinoinensis HOM05D004421 ORTHO05D005227 5.0e-41 171.0 100 82.0
Lsat_1_v5_gn_5_123820 Lactuca sativa HOM05D004421 ORTHO05D005227 5.0e-41 171.0 100 84.0
QL10p065608 Quercus lobata HOM05D004421 ORTHO05D005227 5.0e-41 171.0 100 79.0
Gohir.D02G213600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 8.5e-41 170.2 98 81.6
Solyc02g068770.4 Solanum lycopersicum HOM05D004421 ORTHO05D005227 8.5e-41 170.2 98 83.7
DCAR_019262 Daucus carota HOM05D004421 ORTHO05D005227 1.1e-40 169.9 100 81.0
Duzib128G1691 Durio zibethinus HOM05D004421 ORTHO05D005227 1.1e-40 169.9 107 77.6
QL08p031014 Quercus lobata HOM05D004421 ORTHO05D005227 1.1e-40 169.9 100 79.0
CiPaw.03G156500 Carya illinoinensis HOM05D004421 ORTHO05D005227 1.9e-40 169.1 100 80.0
MELO3C019309.2 Cucumis melo HOM05D004421 ORTHO05D005227 1.9e-40 169.1 101 82.2
QL10p065434 Quercus lobata HOM05D004421 ORTHO05D005227 1.9e-40 169.1 100 78.0
CDE06G2669 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 2.5e-40 168.7 98 82.7
CAN.G358.77 Capsicum annuum HOM05D004421 ORTHO05D005227 5.5e-40 167.5 98 81.6
SGA_v2.0_scaffold392G50685 Striga asiatica HOM05D004421 ORTHO05D005227 5.5e-40 167.5 108 75.9
Nitab4.5_0001288g0200 Nicotiana tabacum HOM05D004421 ORTHO05D005227 7.2e-40 167.2 98 81.6
DCAR_012923 Daucus carota HOM05D004421 ORTHO05D005227 1.6e-39 166.0 100 79.0
Hund24697 Selenicereus undatus HOM05D004421 ORTHO05D005227 1.6e-39 166.0 100 84.0
Aqoxy6G00590 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 2.1e-39 165.6 100 76.0
PSO017G4413 Papaver somniferum HOM05D004421 ORTHO05D005227 2.7e-39 165.2 108 75.9
PSO675G5827 Papaver somniferum HOM05D004421 ORTHO05D005227 2.7e-39 165.2 108 75.9
Atru.chr2.3508 Acer truncatum HOM05D004421 ORTHO05D005227 3.6e-39 164.9 102 79.4
COL.COLO4_09709 Corchorus olitorius HOM05D004421 ORTHO05D005227 6.1e-39 164.1 108 77.8
Rhsim06G0166700 Rhododendron simsii HOM05D004421 ORTHO05D005227 8.0e-39 163.7 100 78.0
ATR0665G259 Amborella trichopoda HOM05D004421 ORTHO05D005227 1.8e-38 162.5 99 76.8
SGA_v2.0_scaffold363G49953 Striga asiatica HOM05D004421 ORTHO05D005227 1.8e-38 162.5 102 79.4
SGA_v2.0_scaffold159G37698 Striga asiatica HOM05D004421 ORTHO05D005227 1.2e-37 159.8 101 76.2
Cc05_g02530 Coffea canephora HOM05D004421 ORTHO05D005227 1.5e-37 159.5 108 74.1
Cc05_g14180 Coffea canephora HOM05D004421 ORTHO05D005227 9.7e-37 156.8 100 76.0
THA.LOC104811627 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 9.7e-37 156.8 98 76.5
Thhalv10015072m.g Eutrema salsugineum HOM05D004421 ORTHO05D005227 1.7e-36 156.0 108 73.1
BraA02t06048Z Brassica rapa HOM05D004421 ORTHO05D005227 6.3e-36 154.1 108 71.3
Eucgr.B01013 Eucalyptus grandis HOM05D004421 ORTHO05D005227 6.3e-36 154.1 95 77.9
Aa31LG3G11160 Aethionema arabicum HOM05D004421 ORTHO05D005227 1.4e-35 152.9 108 71.3
BcaB05g22185 Brassica carinata HOM05D004421 ORTHO05D005227 1.4e-35 152.9 101 73.3
THA.LOC104813431 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 1.4e-35 152.9 98 75.5
A02p09830 Brassica napus HOM05D004421 ORTHO05D005227 1.8e-35 152.5 108 70.4
Carub.0008s1546 Capsella rubella HOM05D004421 ORTHO05D005227 4.1e-35 151.4 108 68.5
BcaB08g35879 Brassica carinata HOM05D004421 ORTHO05D005227 7.0e-35 150.6 101 72.3
BcaC04g20265 Brassica carinata HOM05D004421 ORTHO05D005227 7.0e-35 150.6 101 72.3
C02p16370 Brassica napus HOM05D004421 ORTHO05D005227 7.0e-35 150.6 101 72.3
BolC2t07739H Brassica oleracea HOM05D004421 ORTHO05D005227 7.0e-35 150.6 101 72.3
BraA10t43337Z Brassica rapa HOM05D004421 ORTHO05D005227 7.0e-35 150.6 101 72.3
AT5G55140 Arabidopsis thaliana HOM05D004421 ORTHO05D005227 1.2e-34 149.8 108 68.5
AL8G30670 Arabidopsis lyrata HOM05D004421 ORTHO05D005227 1.6e-34 149.4 108 67.6
MBI16_g23852_MAGBIO Magnolia biondii HOM05D004421 ORTHO05D005227 1.6e-34 149.4 110 66.4
Sp6g17090 Schrenkiella parvula HOM05D004421 ORTHO05D005227 1.6e-34 149.4 101 71.3
CARHR268500 Cardamine hirsuta HOM05D004421 ORTHO05D005227 2.7e-34 148.7 108 69.4
A05p12050 Brassica napus HOM05D004421 ORTHO05D005227 1.7e-33 146.0 102 71.6
A10p12420 Brassica napus HOM05D004421 ORTHO05D005227 1.7e-33 146.0 102 71.6
C09p45840 Brassica napus HOM05D004421 ORTHO05D005227 1.7e-33 146.0 102 71.6
BolC9t57441H Brassica oleracea HOM05D004421 ORTHO05D005227 1.7e-33 146.0 102 71.6
TPR.G40166 Trifolium pratense HOM05D004421 ORTHO05D005227 1.7e-33 146.0 84 85.7
Zm00001eb211500 Zea mays HOM05D004421 ORTHO05D005227 2.5e-32 142.1 99 68.7
HPP92_026149 Vanilla planifolia HOM05D004421 ORTHO05D005227 3.2e-32 141.7 99 66.7
Os08g0110100 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 7.2e-32 140.6 104 64.4
CSS0048822 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 9.8e-29 130.2 100 67.0
Lj2g0010759 Lotus japonicus HOM05D004421 ORTHO05D005227 1.3e-28 129.8 100 66.0
vmacro12170 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 8.3e-28 127.1 82 78.0
BcaC03g14260 Brassica carinata HOM05D004421 ORTHO05D005227 2.4e-27 125.6 81 75.3
SEGI_06591 Sequoiadendron giganteum HOM05D004421 ORTHO05D005227 3.1e-27 125.2 102 60.8
Dinv22240 Davidia involucrata HOM05D004421 ORTHO05D005227 1.6e-26 122.9 66 86.4
BraA03t14310Z Brassica rapa HOM05D004421 ORTHO05D005227 7.7e-26 120.6 96 65.6
A08p21130 Brassica napus HOM05D004421 ORTHO05D005227 1.7e-25 119.4 96 65.6
Hma1.2p1_2381F.1_g321010 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 7.2e-24 114.0 92 65.2
FvH4_6g04610 Fragaria vesca HOM05D004421 ORTHO05D005227 1.6e-23 112.8 75 77.3
Eucgr.B01894 Eucalyptus grandis HOM05D004421 ORTHO05D005227 2.1e-23 112.5 65 80.0
Mapoly0058s0042 Marchantia polymorpha HOM05D004421 ORTHO05D005227 2.1e-23 112.5 90 62.2
BcaC03g14258 Brassica carinata HOM05D004421 ORTHO05D005227 6.1e-23 110.9 85 65.9
Os06g0339800 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 1.0e-22 110.2 97 58.8
AagrBONN_evm.TU.Sc2ySwM_344.5034 Anthoceros agrestis HOM05D004421 ORTHO05D005227 2.6e-21 105.5 91 60.4
Migut.H01800 Erythranthe guttata HOM05D004421 ORTHO05D005227 1.3e-20 103.2 56 83.9
Potri.010G076275 Populus trichocarpa HOM05D004421 ORTHO05D005227 5.9e-18 94.4 78 62.8
MD09G1112900 Malus domestica HOM05D004421 ORTHO05D005227 1.3e-17 93.2 50 84.0
Pp3c26_2200 Physcomitrium patens HOM05D004421 ORTHO05D005227 2.3e-17 92.4 87 55.2
HanXRQChr16g0506671 Helianthus annuus HOM05D004421 ORTHO05D005227 5.0e-17 91.3 58 77.6
GSVIVG01030492001 Vitis vinifera HOM05D004421 ORTHO05D005227 3.3e-16 88.6 59 71.2
Manes.12G070801 Manihot esculenta HOM05D004421 ORTHO05D005227 1.2e-15 86.7 50 78.0
SMO172G0081 Selaginella moellendorffii HOM05D004421 ORTHO05D005227 7.5e-13 77.4 89 47.2
RcHm_v2.0_Chr4g0419171 Rosa chinensis HOM05D004421 ORTHO05D005227 2.2e-12 75.9 109 44.0
Cre05.g234659 Chlamydomonas reinhardtii HOM05D004421 ORTHO05D005227 2.5e-08 62.4 91 37.4
Nn2g15167 Nelumbo nucifera HOM05D004421 ORTHO05D005227 7.3e-08 60.8 45 68.9


User provided reference genes

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