Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62030384 Chenopodium quinoa HOM05D002265 ORTHO05D002400 0.0e+00 1286.9 688 100.0
AUR62026152 Chenopodium quinoa HOM05D002265 ORTHO05D002400 0.0e+00 1190.3 688 92.4
EL10Ac3g07179 Beta vulgaris HOM05D002265 ORTHO05D002400 7.4e-215 751.1 689 62.8
Ah.04g151160 Amaranthus hybridus HOM05D000087 ORTHO05D006949 5.7e-191 671.8 677 59.4
Hund19117 Selenicereus undatus HOM05D002265 ORTHO05D002400 1.5e-111 407.9 682 43.0
Sc19g0008450 Simmondsia chinensis HOM05D002265 ORTHO05D002400 2.7e-68 264.2 708 33.6
Rhsim03G0033200 Rhododendron simsii HOM05D002265 ORTHO05D002400 4.4e-42 177.2 698 28.2
Actinidia39181 Actinidia chinensis HOM05D002265 ORTHO05D002400 1.2e-36 159.1 734 27.7
vmacro21944 Vaccinium macrocarpon HOM05D002265 ORTHO05D002400 1.2e-36 159.1 687 29.1
TWI53G1000 Tripterygium wilfordii HOM05D002265 ORTHO05D002400 2.1e-36 158.3 748 27.4
QL07p004364 Quercus lobata HOM05D002265 ORTHO05D002400 1.0e-35 156.0 799 25.5
Nitab4.5_0001618g0010 Nicotiana tabacum HOM05D002265 ORTHO05D002400 4.0e-35 154.1 709 28.5
Psat3g076400 Pisum sativum HOM05D002265 ORTHO05D002400 5.2e-35 153.7 701 27.1
TPR.G32730 Trifolium pratense HOM05D002265 ORTHO05D002400 5.2e-35 153.7 677 27.0
Potri.006G043900 Populus trichocarpa HOM05D002265 ORTHO05D002400 2.2e-33 148.3 824 26.2
Phvul.001G127000 Phaseolus vulgaris HOM05D002265 ORTHO05D002400 6.4e-33 146.7 763 26.0
Dinv18477 Davidia involucrata HOM05D002265 ORTHO05D002400 1.4e-32 145.6 798 27.4
COL.COLO4_34259 Corchorus olitorius HOM05D002265 ORTHO05D002400 2.4e-32 144.8 807 27.1
Glyma.03G131000 Glycine max HOM05D002265 ORTHO05D002400 2.4e-32 144.8 759 26.5
Medtr7g090500 Medicago truncatula HOM05D002265 ORTHO05D002400 2.4e-32 144.8 686 26.5
CSS0016894 Camellia sinensis var. sinensis HOM05D002265 ORTHO05D002400 3.2e-32 144.4 760 25.4
Potri.016G041100 Populus trichocarpa HOM05D002265 ORTHO05D002400 1.2e-31 142.5 793 26.6
Gohir.D09G115700 Gossypium hirsutum HOM05D002265 ORTHO05D002400 1.6e-31 142.1 787 26.4
Nitab4.5_0005031g0040 Nicotiana tabacum HOM05D002265 ORTHO05D002400 1.6e-31 142.1 718 26.3
Sopen04g008940 Solanum pennellii HOM05D002265 ORTHO05D002400 2.7e-31 141.4 751 27.2
Gorai.006G134000 Gossypium raimondii HOM05D002265 ORTHO05D002400 3.5e-31 141.0 787 26.3
Rhsim03G0032700 Rhododendron simsii HOM05D002265 ORTHO05D002400 3.5e-31 141.0 744 26.7
Solyc04g017750.4 Solanum lycopersicum HOM05D002265 ORTHO05D002400 4.6e-31 140.6 748 26.1
Thecc.05G143100 Theobroma cacao HOM05D002265 ORTHO05D002400 6.0e-31 140.2 816 24.6
Cfa016736 Carpinus fangiana HOM05D002265 ORTHO05D002400 7.8e-31 139.8 721 26.8
ECA248G3739 Erigeron canadensis HOM05D002265 ORTHO05D002400 1.7e-30 138.7 673 25.6
CANSAT80G1944 Cannabis sativa HOM05D002265 ORTHO05D002400 2.3e-30 138.3 675 27.4
Sabra16G0047300 Salix brachista HOM05D002265 ORTHO05D002400 6.6e-30 136.7 839 24.6
DCAR_013625 Daucus carota HOM05D002265 ORTHO05D002400 8.6e-30 136.3 753 26.0
Manes.08G055800 Manihot esculenta HOM05D002265 ORTHO05D002400 1.1e-29 136.0 832 25.6
Glyma.19G133000 Glycine max HOM05D002265 ORTHO05D002400 1.5e-29 135.6 754 25.3
Sabra16G0043900 Salix brachista HOM05D002265 ORTHO05D002400 1.5e-29 135.6 841 24.3
AUR62030383 Chenopodium quinoa HOM05D002265 ORTHO05D002400 1.9e-29 135.2 731 28.0
CAN.G1237.28 Capsicum annuum HOM05D002265 ORTHO05D002400 2.5e-29 134.8 742 27.2
Eucgr.K01584 Eucalyptus grandis HOM05D002265 ORTHO05D002400 2.5e-29 134.8 757 25.5
Lj1g0002630 Lotus japonicus HOM05D002265 ORTHO05D002400 4.3e-29 134.0 733 25.9
Gohir.A09G119500 Gossypium hirsutum HOM05D002265 ORTHO05D002400 1.2e-28 132.5 786 26.0
ClCG10G015580 Citrullus lanatus HOM05D002265 ORTHO05D002400 1.6e-28 132.1 663 26.8
Duzib128G0504 Durio zibethinus HOM05D002265 ORTHO05D002400 1.6e-28 132.1 796 26.0
Oeu033032.2 Olea europaea HOM05D002265 ORTHO05D002400 1.6e-28 132.1 722 25.8
CiPaw.09G043600 Carya illinoinensis HOM05D002265 ORTHO05D002400 3.6e-28 131.0 812 26.4
Cc06_g18510 Coffea canephora HOM05D002265 ORTHO05D002400 6.2e-28 130.2 769 25.7
Ciclev10004157m.g Citrus clementina HOM05D002265 ORTHO05D002400 5.2e-27 127.1 827 25.4
Sopen10g030410 Solanum pennellii HOM05D002265 ORTHO05D002400 3.4e-26 124.4 720 24.9
VMungo1383G3245 Vigna mungo HOM05D002265 ORTHO05D002400 3.4e-26 124.4 734 25.5
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 7.5e-26 123.2 769 25.2
Cpa.g.sc5.187 Carica papaya HOM05D002265 ORTHO05D002400 7.5e-26 123.2 816 25.9
Ca_08415_v3 Cicer arietinum L. HOM05D002265 ORTHO05D002400 7.5e-26 123.2 762 24.4
MSTRG.19828 Avicennia marina HOM05D002265 ORTHO05D002400 2.9e-25 121.3 837 24.5
arahy.Tifrunner.gnm1.ann1.HURS1T Arachis hypogaea HOM05D002265 ORTHO05D002400 3.7e-25 120.9 764 25.7
PGR142G1568 Punica granatum HOM05D002265 ORTHO05D002400 6.4e-25 120.2 767 25.6
Oeu017892.1 Olea europaea HOM05D002265 ORTHO05D002400 8.3e-25 119.8 730 23.8
MELO3C009820.2 Cucumis melo HOM05D002265 ORTHO05D002400 2.4e-24 118.2 813 25.5
HanXRQChr17g0545901 Helianthus annuus HOM05D002265 ORTHO05D002400 4.1e-24 117.5 670 25.4
Lalb_Chr25g0287001 Lupinus albus HOM05D002265 ORTHO05D002400 4.1e-24 117.5 607 26.9
CsaV3_3G040840 Cucumis sativus L. HOM05D002265 ORTHO05D002400 7.1e-24 116.7 802 24.9
MD14G1082900 Malus domestica HOM05D002265 ORTHO05D002400 1.6e-23 115.5 790 26.5
CiPaw.10G037400 Carya illinoinensis HOM05D002265 ORTHO05D002400 2.1e-23 115.2 732 25.3
Peaxi162Scf00130g01217 Petunia axillaris HOM05D002265 ORTHO05D002400 1.9e-21 108.6 689 24.4
FvH4_6g24980 Fragaria vesca HOM05D002265 ORTHO05D002400 3.3e-21 107.8 713 25.9
FAN14G5338 Fragaria x ananassa HOM05D002265 ORTHO05D002400 1.2e-20 105.9 713 25.8
Sed0013020 Sechium edule HOM05D002265 ORTHO05D002400 4.7e-20 104.0 822 24.6
Lj2A392T42 Lonicera japonica HOM05D002265 ORTHO05D002400 1.4e-19 102.4 227 33.0
Migut.J01689 Erythranthe guttata HOM05D002265 ORTHO05D002400 2.3e-19 101.7 217 35.9
HanXRQChr01g0008261 Helianthus annuus HOM05D002265 ORTHO05D002400 4.0e-19 100.9 213 31.0
Prupe.7G047600 Prunus persica HOM05D002265 ORTHO05D002400 5.2e-19 100.5 276 30.1
Haze_19767 Corylus avellana HOM05D002265 ORTHO05D002400 1.2e-18 99.4 273 34.8
Solyc10g079790.1 Solanum lycopersicum HOM05D002265 ORTHO05D002400 1.5e-18 99.0 256 30.1
unitig_749.g14150 Utricularia gibba HOM05D002265 ORTHO05D002400 1.5e-18 99.0 716 23.2
GSVIVG01033565001 Vitis vinifera HOM05D002265 ORTHO05D000863 3.4e-18 97.8 709 23.4
Lsat_1_v5_gn_5_159761 Lactuca sativa HOM05D002265 ORTHO05D002400 5.8e-18 97.1 236 31.4
Nitab4.5_0004127g0020 Nicotiana tabacum HOM05D002265 ORTHO05D002400 6.4e-17 93.6 376 28.2
PGSC0003DMG400029849 Solanum tuberosum HOM05D002265 ORTHO05D002400 4.1e-16 90.9 280 30.4
Oeu017900.1 Olea europaea HOM05D002265 ORTHO05D002400 7.1e-16 90.1 214 29.9
Haze_19766 Corylus avellana HOM05D002265 ORTHO05D002400 3.0e-14 84.7 246 32.5
RcHm_v2.0_Chr2g0124711 Rosa chinensis HOM05D002265 ORTHO05D002400 8.6e-14 83.2 267 25.1
Oeu017894.1 Olea europaea HOM05D002265 ORTHO05D002400 1.1e-13 82.8 233 30.9
MD12G1087500 Malus domestica HOM05D002265 ORTHO05D002400 1.5e-13 82.4 376 28.2
FAN05G2014 Fragaria x ananassa HOM05D002265 ORTHO05D002400 1.9e-13 82.0 396 26.8
C09p72830 Brassica napus HOM05D002265 ORTHO05D002400 3.3e-13 81.3 760 23.4
Peaxi162Scf00648g00313 Petunia axillaris HOM05D002265 ORTHO05D002400 3.3e-13 81.3 254 28.3
SGA_v2.0_scaffold105G30338 Striga asiatica HOM05D002265 ORTHO05D002400 3.3e-13 81.3 275 29.1
Atru.chr1.1260 Acer truncatum HOM05D002265 ORTHO05D002400 7.3e-13 80.1 237 32.1
Sabra06G0030200 Salix brachista HOM05D002265 ORTHO05D002400 1.6e-12 79.0 270 27.8
AL6G13610 Arabidopsis lyrata HOM05D002265 ORTHO05D002400 2.8e-12 78.2 769 22.9
CAN.G1656.12 Capsicum annuum HOM05D002265 ORTHO05D002400 6.2e-12 77.0 422 25.4
FAN09G1166 Fragaria x ananassa HOM05D002265 ORTHO05D002400 1.1e-11 76.3 390 25.4
BolC9t60019H Brassica oleracea HOM05D002265 ORTHO05D002400 1.8e-11 75.5 791 22.5
Actinidia09286 Actinidia chinensis HOM05D002265 ORTHO05D002400 4.0e-11 74.3 601 25.3
Carub.0006s0295 Capsella rubella HOM05D002265 ORTHO05D002400 8.9e-11 73.2 669 21.5
CARHR209260 Cardamine hirsuta HOM05D002265 ORTHO05D002400 1.2e-10 72.8 647 23.3
HanXRQChr04g0124931 Helianthus annuus HOM05D002265 ORTHO05D002400 1.5e-10 72.4 224 24.1
THA.LOC104823216 Tarenaya hassleriana HOM05D002265 ORTHO05D002400 1.5e-10 72.4 303 26.4
Atru.chr1.1261 Acer truncatum HOM05D002265 ORTHO05D002400 2.0e-10 72.0 264 27.7
Nitab4.5_0004127g0010 Nicotiana tabacum HOM05D002265 ORTHO05D002400 2.6e-10 71.6 255 27.8
A10p32110 Brassica napus HOM05D002265 ORTHO05D002400 7.6e-10 70.1 764 22.9
Manes.09G009350 Manihot esculenta HOM05D002265 ORTHO05D002400 9.9e-10 69.7 101 40.6
Sp6g38740 Schrenkiella parvula HOM05D002265 ORTHO05D002400 9.9e-10 69.7 92 41.3
unitig_26.g9060 Utricularia gibba HOM05D002265 ORTHO05D002400 9.9e-10 69.7 605 24.8
BraA10t45254Z Brassica rapa HOM05D002265 ORTHO05D002400 2.9e-09 68.2 762 23.1
Lsat_1_v5_gn_8_82941 Lactuca sativa HOM05D002265 ORTHO05D002400 4.9e-09 67.4 216 27.8
Aa31LG1G21310 Aethionema arabicum HOM05D002265 ORTHO05D002400 1.1e-08 66.2 220 30.5
EL10Ac8g20477 Beta vulgaris HOM05D002265 ORTHO05D002400 1.4e-08 65.9 147 30.6
CAN.G1709.1 Capsicum annuum HOM05D002265 ORTHO05D002400 3.2e-08 64.7 172 27.3
Duzib106G0983 Durio zibethinus HOM05D002265 ORTHO05D002400 3.2e-08 64.7 709 22.3
THA.LOC104803167 Tarenaya hassleriana HOM05D002265 ORTHO05D002400 3.2e-08 64.7 88 40.9
Thhalv10012432m.g Eutrema salsugineum HOM05D002265 ORTHO05D002400 5.4e-08 63.9 802 21.4
AUR62036537 Chenopodium quinoa HOM05D002265 ORTHO05D002400 1.6e-07 62.4 151 31.8
FAN02G1400 Fragaria x ananassa HOM05D002265 ORTHO05D002400 2.1e-07 62.0 439 28.0
BcaC06g32105 Brassica carinata HOM05D002265 ORTHO05D002400 4.6e-07 60.8 142 31.0
TAR369G0190 Trochodendron aralioides HOM05D002265 ORTHO05D002400 4.6e-07 60.8 130 34.6
EL10Ac2g02851 Beta vulgaris HOM05D002265 ORTHO05D002400 2.3e-06 58.5 163 26.4
Actinidia06269 Actinidia chinensis HOM05D002265 ORTHO05D002400 3.0e-06 58.2 197 28.4
Ah.10g030820 Amaranthus hybridus HOM05D002265 ORTHO05D002400 3.0e-06 58.2 135 31.9
FvH4_5g29010 Fragaria vesca HOM05D002265 ORTHO05D002400 3.0e-06 58.2 120 35.8
Actinidia19444 Actinidia chinensis HOM05D002265 ORTHO05D002400 3.9e-06 57.8 128 32.0
CAN.G199.45 Capsicum annuum HOM05D002265 ORTHO05D002400 3.9e-06 57.8 226 27.9
CiPaw.14G006100 Carya illinoinensis HOM05D002265 ORTHO05D002400 3.9e-06 57.8 194 26.8
DCAR_003238 Daucus carota HOM05D002265 ORTHO05D002400 3.9e-06 57.8 119 31.1
TAR053G0003 Trochodendron aralioides HOM05D002265 ORTHO05D002400 3.9e-06 57.8 125 35.2
Gohir.A05G333200 Gossypium hirsutum HOM05D002265 ORTHO05D002400 5.1e-06 57.4 74 41.9
Sed0027247 Sechium edule HOM05D002265 ORTHO05D002400 5.1e-06 57.4 144 29.9
AT5G04020 Arabidopsis thaliana HOM05D002265 ORTHO05D002400 6.6e-06 57.0 764 22.3
Carub.0004s2082 Capsella rubella HOM05D002265 ORTHO05D002400 6.6e-06 57.0 85 37.6
AUR62031130 Chenopodium quinoa HOM05D002265 ORTHO05D002400 6.6e-06 57.0 143 30.1
FAN18G3506 Fragaria x ananassa HOM05D002265 ORTHO05D002400 6.6e-06 57.0 119 33.6
Hund13331 Selenicereus undatus HOM05D002265 ORTHO05D002400 6.6e-06 57.0 151 29.8
arahy.Tifrunner.gnm1.ann1.CMX2VV Arachis hypogaea HOM05D002265 ORTHO05D002400 8.7e-06 56.6 76 42.1
arahy.Tifrunner.gnm1.ann1.Z3R2Q1 Arachis hypogaea HOM05D002265 ORTHO05D002400 8.7e-06 56.6 57 47.4
FAN08G0300 Fragaria x ananassa HOM05D002265 ORTHO05D002400 8.7e-06 56.6 119 33.6
FAN13G1675 Fragaria x ananassa HOM05D002265 ORTHO05D002400 8.7e-06 56.6 119 33.6


User provided reference genes

Program Settings