Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62030327 Chenopodium quinoa HOM05D004945 ORTHO05D005536 1.5e-89 332.8 162 100.0
AUR62018340 Chenopodium quinoa HOM05D004945 ORTHO05D005536 2.0e-41 172.9 84 97.6
AUR62031980 Chenopodium quinoa HOM05D004945 ORTHO05D005536 2.0e-41 172.9 84 97.6
AUR62044702 Chenopodium quinoa HOM05D004945 ORTHO05D005536 2.0e-41 172.9 84 97.6
AUR62044703 Chenopodium quinoa HOM05D004945 ORTHO05D005536 2.0e-41 172.9 84 97.6
AUR62023991 Chenopodium quinoa HOM05D004945 ORTHO05D005536 4.5e-38 161.8 84 91.7
Ah.13g075140 Amaranthus hybridus HOM05D004945 ORTHO05D005536 5.5e-36 154.8 84 86.9
EL10Ac3g07227 Beta vulgaris HOM05D004945 ORTHO05D005536 5.5e-36 154.8 84 85.7
Ah.04g153390 Amaranthus hybridus HOM05D004945 ORTHO05D005536 7.2e-36 154.5 84 84.5
Sc12g0011140 Simmondsia chinensis HOM05D004945 ORTHO05D005536 4.4e-33 145.2 84 76.2
Sc15g0001010 Simmondsia chinensis HOM05D004945 ORTHO05D005536 2.2e-32 142.9 84 75.0
Thecc.09G185900 Theobroma cacao HOM05D004945 ORTHO05D005536 1.3e-29 133.7 85 71.8
Eucgr.C00118 Eucalyptus grandis HOM05D004945 ORTHO05D005536 2.2e-29 132.9 82 72.0
Rhsim08G0249700 Rhododendron simsii HOM05D004945 ORTHO05D005536 2.9e-29 132.5 85 69.4
Manes.06G020000 Manihot esculenta HOM05D004945 ORTHO05D005536 1.1e-28 130.6 85 70.6
Gohir.A08G017500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.9e-28 129.8 82 69.5
MD07G1027600 Malus domestica HOM05D004945 ORTHO05D005536 1.9e-28 129.8 85 69.4
Gorai.004G025200 Gossypium raimondii HOM05D004945 ORTHO05D005536 3.2e-28 129.0 85 68.2
Glyma.15G165900 Glycine max HOM05D004945 ORTHO05D005536 4.2e-28 128.6 85 65.9
Gohir.D08G028100 Gossypium hirsutum HOM05D004945 ORTHO05D005536 4.2e-28 128.6 85 68.2
ATR0626G412 Amborella trichopoda HOM05D004945 ORTHO05D005536 5.5e-28 128.3 84 66.7
Prupe.1G075600 Prunus persica HOM05D004945 ORTHO05D005536 5.5e-28 128.3 85 68.2
Actinidia38805 Actinidia chinensis HOM05D004945 ORTHO05D005536 7.2e-28 127.9 85 69.4
Cpa.g.sc95.12 Carica papaya HOM05D004945 ORTHO05D005536 7.2e-28 127.9 85 69.4
Glyma.09G059600 Glycine max HOM05D004945 ORTHO05D005536 7.2e-28 127.9 85 67.1
PGR142G1282 Punica granatum HOM05D004945 ORTHO05D005536 9.4e-28 127.5 85 67.1
CiPaw.09G075900 Carya illinoinensis HOM05D004945 ORTHO05D005536 1.2e-27 127.1 85 65.9
Gohir.A13G208400 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.2e-27 127.1 85 69.4
TWI34G0510 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 1.6e-27 126.7 80 66.2
Gohir.D13G212800 Gossypium hirsutum HOM05D004945 ORTHO05D005536 2.1e-27 126.3 82 69.5
Gorai.013G243200 Gossypium raimondii HOM05D004945 ORTHO05D005536 2.1e-27 126.3 82 69.5
MD13G1241900 Malus domestica HOM05D004945 ORTHO05D005536 2.1e-27 126.3 85 68.2
TAR625G1304 Trochodendron aralioides HOM05D004945 ORTHO05D005536 2.1e-27 126.3 85 65.9
CSS0028266 Camellia sinensis var. sinensis HOM05D004945 ORTHO05D005536 3.6e-27 125.6 85 65.9
CiPaw.10G063900 Carya illinoinensis HOM05D004945 ORTHO05D005536 3.6e-27 125.6 85 65.9
COL.COLO4_08559 Corchorus olitorius HOM05D004945 ORTHO05D005536 4.7e-27 125.2 85 67.1
COL.COLO4_22793 Corchorus olitorius HOM05D004945 ORTHO05D005536 4.7e-27 125.2 85 67.1
Duzib150G0603 Durio zibethinus HOM05D004945 ORTHO05D005536 4.7e-27 125.2 85 65.9
CANSAT11G0762 Cannabis sativa HOM05D004945 ORTHO05D005536 6.1e-27 124.8 85 67.1
QL11p013920 Quercus lobata HOM05D004945 ORTHO05D005536 6.1e-27 124.8 85 64.7
TWI63G0641 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 6.1e-27 124.8 85 62.4
Lalb_Chr11g0074741 Lupinus albus HOM05D004945 ORTHO05D005536 8.0e-27 124.4 84 64.3
QL11p014429 Quercus lobata HOM05D004945 ORTHO05D005536 8.0e-27 124.4 85 64.7
DCAR_007670 Daucus carota HOM05D004945 ORTHO05D005536 1.4e-26 123.6 85 65.9
Duzib150G1578 Durio zibethinus HOM05D004945 ORTHO05D005536 1.4e-26 123.6 85 64.7
Gohir.A13G208500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.8e-26 123.2 82 65.9
Gohir.D13G212900 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.8e-26 123.2 85 64.7
Lj6g0012502 Lotus japonicus HOM05D004945 ORTHO05D005536 1.8e-26 123.2 85 64.7
Atru.chr7.757 Acer truncatum HOM05D004945 ORTHO05D005536 2.3e-26 122.9 85 67.1
Atru.chr7.779 Acer truncatum HOM05D004945 ORTHO05D005536 2.3e-26 122.9 85 67.1
Potri.006G075600 Populus trichocarpa HOM05D004945 ORTHO05D005536 2.3e-26 122.9 82 64.6
RcHm_v2.0_Chr4g0399651 Rosa chinensis HOM05D004945 ORTHO05D005536 2.3e-26 122.9 79 69.6
Medtr2g037990 Medicago truncatula HOM05D004945 ORTHO05D005536 3.0e-26 122.5 87 65.5
Ciclev10010043m.g Citrus clementina HOM05D004945 ORTHO05D005536 4.0e-26 122.1 85 63.5
Haze_06091 Corylus avellana HOM05D004945 ORTHO05D005536 4.0e-26 122.1 85 64.7
Potri.018G142500 Populus trichocarpa HOM05D004945 ORTHO05D005536 4.0e-26 122.1 85 64.7
Ca_02105_v3 Cicer arietinum L. HOM05D004945 ORTHO05D005536 6.7e-26 121.3 87 65.5
FvH4_4g07310 Fragaria vesca HOM05D004945 ORTHO05D005536 6.7e-26 121.3 79 67.1
Nitab4.5_0003757g0090 Nicotiana tabacum HOM05D004945 ORTHO05D005536 6.7e-26 121.3 82 67.1
CAN.G308.14 Capsicum annuum HOM05D004945 ORTHO05D005536 8.8e-26 120.9 82 67.1
Sabra18G0116400 Salix brachista HOM05D004945 ORTHO05D005536 8.8e-26 120.9 85 64.7
Migut.D00890 Erythranthe guttata HOM05D004945 ORTHO05D005536 1.1e-25 120.6 82 62.2
Phvul.007G156600 Phaseolus vulgaris HOM05D004945 ORTHO05D005536 1.1e-25 120.6 87 63.2
PGSC0003DMG400026503 Solanum tuberosum HOM05D004945 ORTHO05D005536 1.1e-25 120.6 82 67.1
arahy.Tifrunner.gnm1.ann1.M8DR4H Arachis hypogaea HOM05D004945 ORTHO05D005536 1.5e-25 120.2 82 63.4
arahy.Tifrunner.gnm1.ann1.ZYC9F0 Arachis hypogaea HOM05D004945 ORTHO05D005536 1.5e-25 120.2 82 63.4
Hma1.2p1_1111F.1_g258380 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 1.5e-25 120.2 85 61.2
Psat1g144120 Pisum sativum HOM05D004945 ORTHO05D005536 1.5e-25 120.2 87 65.5
unitig_748.g8030 Utricularia gibba HOM05D004945 ORTHO05D005536 1.5e-25 120.2 84 61.9
FAN07G0945 Fragaria x ananassa HOM05D004945 ORTHO05D005536 2.0e-25 119.8 79 67.1
ClCG06G013580 Citrullus lanatus HOM05D004945 ORTHO05D005536 2.6e-25 119.4 85 64.7
unitig_32.g11008 Utricularia gibba HOM05D004945 ORTHO05D005536 2.6e-25 119.4 84 61.9
Cc04_g00230 Coffea canephora HOM05D004945 ORTHO05D005536 3.3e-25 119.0 85 62.4
Solyc06g063310.2 Solanum lycopersicum HOM05D004945 ORTHO05D005536 3.3e-25 119.0 82 65.9
Sopen06g022780 Solanum pennellii HOM05D004945 ORTHO05D005536 3.3e-25 119.0 82 65.9
TPR.G7575 Trifolium pratense HOM05D004945 ORTHO05D005536 4.4e-25 118.6 87 64.4
Lsat_1_v5_gn_1_39460 Lactuca sativa HOM05D004945 ORTHO05D005536 5.7e-25 118.2 82 63.4
TAR636G3350 Trochodendron aralioides HOM05D004945 ORTHO05D005536 7.5e-25 117.9 85 60.0
Migut.I01191 Erythranthe guttata HOM05D004945 ORTHO05D005536 9.7e-25 117.5 85 61.2
QL11p013931 Quercus lobata HOM05D004945 ORTHO05D005536 9.7e-25 117.5 85 64.7
QL11p014451 Quercus lobata HOM05D004945 ORTHO05D005536 1.3e-24 117.1 87 63.2
MELO3C017430.2 Cucumis melo HOM05D004945 ORTHO05D005536 1.7e-24 116.7 85 63.5
SHI03058 Sapria himalayana HOM05D004945 ORTHO05D005536 2.8e-24 115.9 85 63.5
Psat1g144160 Pisum sativum HOM05D004945 ORTHO05D005536 3.7e-24 115.5 87 63.2
Sed0005101 Sechium edule HOM05D004945 ORTHO05D005536 3.7e-24 115.5 85 62.4
Sed0015624 Sechium edule HOM05D004945 ORTHO05D005536 3.7e-24 115.5 85 62.4
PSO063G0987 Papaver somniferum HOM05D004945 ORTHO05D005536 4.8e-24 115.2 85 60.0
PSO170G0997 Papaver somniferum HOM05D004945 ORTHO05D005536 4.8e-24 115.2 85 60.0
Aqoxy7G02794 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 8.2e-24 114.4 85 61.2
CDE04G2745 Ceratophyllum demersum HOM05D004945 ORTHO05D005536 1.4e-23 113.6 82 61.0
CsaV3_1G031860 Cucumis sativus L. HOM05D004945 ORTHO05D005536 1.4e-23 113.6 85 62.4
Hma1.2p1_0517F.1_g170730 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 1.8e-23 113.2 85 61.2
Aqoxy1G01195 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 9.1e-23 110.9 85 60.0
MD10G1108200 Malus domestica HOM05D004945 ORTHO05D005536 7.7e-22 107.8 88 53.4
THA.LOC104820006 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.3e-21 107.1 85 57.6
BcaB03g12628 Brassica carinata HOM05D004945 ORTHO05D005536 2.2e-21 106.3 85 58.8
Sp7g27810 Schrenkiella parvula HOM05D004945 ORTHO05D005536 2.9e-21 105.9 85 57.6
BcaNung00508 Brassica carinata HOM05D004945 ORTHO05D005536 6.5e-21 104.8 85 57.6
THA.LOC104803956 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 6.5e-21 104.8 85 57.6
THA.LOC104803979 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 6.5e-21 104.8 85 57.6
THA.LOC104811777 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 8.5e-21 104.4 80 61.2
BcaC01g01207 Brassica carinata HOM05D004945 ORTHO05D005536 1.1e-20 104.0 85 57.6
A08p19460 Brassica napus HOM05D004945 ORTHO05D005536 1.1e-20 104.0 85 57.6
C03p88960 Brassica napus HOM05D004945 ORTHO05D005536 1.1e-20 104.0 85 57.6
BolC3t21206H Brassica oleracea HOM05D004945 ORTHO05D005536 1.1e-20 104.0 85 57.6
BraA08t33908Z Brassica rapa HOM05D004945 ORTHO05D005536 1.1e-20 104.0 85 57.6
Carub.0007s1064 Capsella rubella HOM05D004945 ORTHO05D005536 1.9e-20 103.2 85 57.6
Aa31LG2G20550 Aethionema arabicum HOM05D004945 ORTHO05D005536 2.5e-20 102.8 82 56.1
A03p59370 Brassica napus HOM05D004945 ORTHO05D005536 2.5e-20 102.8 85 57.6
C07p57400 Brassica napus HOM05D004945 ORTHO05D005536 2.5e-20 102.8 85 57.6
BolC7t46209H Brassica oleracea HOM05D004945 ORTHO05D005536 2.5e-20 102.8 85 57.6
BraA03t14994Z Brassica rapa HOM05D004945 ORTHO05D005536 2.5e-20 102.8 85 57.6
CARHR237930 Cardamine hirsuta HOM05D004945 ORTHO05D005536 2.5e-20 102.8 85 57.6
Thhalv10026677m.g Eutrema salsugineum HOM05D004945 ORTHO05D005536 9.4e-20 100.9 85 57.6
AT4G30010 Arabidopsis thaliana HOM05D004945 ORTHO05D005536 1.2e-19 100.5 85 55.3
AL7G22230 Arabidopsis lyrata HOM05D004945 ORTHO05D005536 4.7e-19 98.6 85 54.1
ECA247G2100 Erigeron canadensis HOM05D004945 ORTHO05D005536 8.0e-19 97.8 85 54.1
Os02g0175800 Oryza sativa ssp. japonica HOM05D004945 ORTHO05D005536 8.8e-18 94.4 83 53.0
THA.LOC104814658 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.5e-17 93.6 85 51.8
Dinv25512 Davidia involucrata HOM05D004945 ORTHO05D005536 5.4e-15 85.1 60 63.3
PGSC0003DMG400028757 Solanum tuberosum HOM05D004945 ORTHO05D005536 7.0e-15 84.7 57 68.4
A01p08110 Brassica napus HOM05D004945 ORTHO05D005536 1.2e-14 84.0 78 48.7
HanXRQChr15g0497481 Helianthus annuus HOM05D004945 ORTHO05D005536 2.0e-14 83.2 60 60.0
Nitab4.5_0000617g0120 Nicotiana tabacum HOM05D004945 ORTHO05D005536 3.5e-14 82.4 53 69.8
THA.LOC109116878 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 3.5e-14 82.4 56 66.1
BcaB03g15243 Brassica carinata HOM05D004945 ORTHO05D005536 1.3e-13 80.5 75 48.0
SMO361G0023 Selaginella moellendorffii HOM05D004945 ORTHO05D005536 6.1e-11 71.6 86 36.0
Nitab4.5_0006750g0010 Nicotiana tabacum HOM05D004945 ORTHO05D005536 1.4e-10 70.5 57 50.9
arahy.Tifrunner.gnm1.ann1.2FH55K Arachis hypogaea HOM05D004945 ORTHO05D005536 5.7e-09 65.1 49 61.2
arahy.Tifrunner.gnm1.ann1.U71V3Q Arachis hypogaea HOM05D004945 ORTHO05D005536 5.7e-09 65.1 49 61.2
GSVIVG01010862001 Vitis vinifera HOM05D004945 ORTHO05D005536 8.3e-08 61.2 49 53.1
AagrBONN_evm.TU.Sc2ySwM_344.4974 Anthoceros agrestis HOM05D004945 ORTHO05D005536 2.4e-07 59.7 83 36.1
Oeu001819.1 Olea europaea HOM05D004945 ORTHO05D005536 3.1e-07 59.3 71 47.9
Nn8g40786 Nelumbo nucifera HOM05D004945 ORTHO05D005536 7.0e-07 58.2 44 52.3
Nitab4.5_0002354g0060 Nicotiana tabacum HOM05D004945 ORTHO05D005536 2.7e-06 56.2 45 53.3
BcaC09g51779 Brassica carinata HOM05D004945 ORTHO05D005536 4.5e-06 55.5 116 31.0
BcaNung06654 Brassica carinata HOM05D004945 ORTHO05D005536 4.5e-06 55.5 116 31.0


User provided reference genes

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