Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62030265 Chenopodium quinoa HOM05D004987 ORTHO05D005960 6.1e-244 847.0 423 100.0
AUR62018393 Chenopodium quinoa HOM05D004987 ORTHO05D005960 2.0e-223 778.9 415 94.0
EL10Ac3g07283 Beta vulgaris HOM05D004987 ORTHO05D005960 2.5e-205 718.8 415 84.8
Ah.02g126930 Amaranthus hybridus HOM05D004987 ORTHO05D005960 6.6e-198 694.1 413 83.1
Sc13g0000910 Simmondsia chinensis HOM05D004987 ORTHO05D005960 4.9e-193 677.9 415 79.5
Dinv01708 Davidia involucrata HOM05D004987 ORTHO05D005960 6.0e-183 644.4 415 74.9
GSVIVG01007214001 Vitis vinifera HOM05D004987 ORTHO05D005960 1.3e-182 643.3 415 74.0
Ciclev10015100m.g Citrus clementina HOM05D004987 ORTHO05D005960 5.1e-182 641.3 415 73.7
Haze_06979 Corylus avellana HOM05D004987 ORTHO05D005960 6.6e-182 641.0 415 73.7
QL05p068327 Quercus lobata HOM05D004987 ORTHO05D005960 1.9e-181 639.4 414 74.6
QL05p068818 Quercus lobata HOM05D004987 ORTHO05D005960 1.9e-181 639.4 414 74.6
CiPaw.09G105700 Carya illinoinensis HOM05D004987 ORTHO05D005960 5.6e-181 637.9 415 74.5
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla HOM05D004987 ORTHO05D005960 2.1e-180 636.0 415 73.5
Thecc.06G237200 Theobroma cacao HOM05D004987 ORTHO05D005960 6.2e-180 634.4 415 73.3
CiPaw.10G079900 Carya illinoinensis HOM05D004987 ORTHO05D005960 1.4e-179 633.3 415 73.7
CANSAT01G2438 Cannabis sativa HOM05D004987 ORTHO05D005960 4.0e-179 631.7 415 74.5
Ca_15341_v3 Cicer arietinum L. HOM05D004987 ORTHO05D005960 8.9e-179 630.6 415 73.7
CsaV3_1G015810 Cucumis sativus L. HOM05D004987 ORTHO05D005960 8.9e-179 630.6 415 72.8
Peaxi162Scf00488g00925 Petunia axillaris HOM05D004987 ORTHO05D005960 1.5e-178 629.8 417 73.4
ClCG01G010690 Citrullus lanatus HOM05D004987 ORTHO05D005960 4.4e-178 628.2 415 72.8
Gohir.A06G204500 Gossypium hirsutum HOM05D004987 ORTHO05D005960 7.6e-178 627.5 415 72.0
Rhsim13G0142900 Rhododendron simsii HOM05D004987 ORTHO05D005960 7.6e-178 627.5 415 73.0
Duzib235G0100 Durio zibethinus HOM05D004987 ORTHO05D005960 9.9e-178 627.1 415 71.8
Manes.09G081692 Manihot esculenta HOM05D004987 ORTHO05D005960 1.7e-177 626.3 415 72.3
MELO3C025535.2 Cucumis melo HOM05D004987 ORTHO05D005960 3.8e-177 625.2 415 72.5
Lj2C259G8 Lonicera japonica HOM05D004987 ORTHO05D005960 3.8e-177 625.2 421 72.7
ECA248G1395 Erigeron canadensis HOM05D004987 ORTHO05D005960 8.4e-177 624.0 415 73.3
TAR626G0553 Trochodendron aralioides HOM05D004987 ORTHO05D005960 1.1e-176 623.6 416 72.4
Nn1g07472 Nelumbo nucifera HOM05D004987 ORTHO05D005960 1.4e-176 623.2 415 72.0
TWI38G0401 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 1.4e-176 623.2 415 72.0
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea HOM05D004987 ORTHO05D005960 3.2e-176 622.1 419 72.3
Gorai.010G249200 Gossypium raimondii HOM05D004987 ORTHO05D005960 3.2e-176 622.1 415 71.3
Nitab4.5_0000318g0050 Nicotiana tabacum HOM05D004987 ORTHO05D005960 4.1e-176 621.7 414 72.9
TAR627G0360 Trochodendron aralioides HOM05D004987 ORTHO05D005960 5.4e-176 621.3 416 72.8
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea HOM05D004987 ORTHO05D005960 7.1e-176 620.9 419 72.3
Glyma.17G007300 Glycine max HOM05D004987 ORTHO05D005960 9.2e-176 620.5 415 72.0
Gohir.D06G217000 Gossypium hirsutum HOM05D004987 ORTHO05D005960 9.2e-176 620.5 415 71.3
Potri.006G017000 Populus trichocarpa HOM05D004987 ORTHO05D005960 9.2e-176 620.5 415 71.1
Prupe.4G007100 Prunus persica HOM05D004987 ORTHO05D005960 9.2e-176 620.5 415 72.5
CSS0019037 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 1.2e-175 620.2 415 73.3
CSS0028023 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 1.2e-175 620.2 415 73.3
CSS0011246 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 1.6e-175 619.8 415 73.3
Actinidia26840 Actinidia chinensis HOM05D004987 ORTHO05D005960 2.7e-175 619.0 415 72.8
Glyma.07G266900 Glycine max HOM05D004987 ORTHO05D005960 2.7e-175 619.0 416 72.1
FvH4_3g00590 Fragaria vesca HOM05D004987 ORTHO05D005960 3.5e-175 618.6 415 72.8
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea HOM05D004987 ORTHO05D005960 7.8e-175 617.5 431 70.5
FAN25G3815 Fragaria x ananassa HOM05D004987 ORTHO05D005960 7.8e-175 617.5 415 72.5
Sed0000076 Sechium edule HOM05D004987 ORTHO05D005960 7.8e-175 617.5 418 71.8
RcHm_v2.0_Chr5g0000801 Rosa chinensis HOM05D004987 ORTHO05D005960 1.0e-174 617.1 415 72.8
Lj4g0022097 Lotus japonicus HOM05D004987 ORTHO05D005960 2.3e-174 615.9 415 71.8
Aa31LG2G12480 Aethionema arabicum HOM05D004987 ORTHO05D005960 5.1e-174 614.8 415 71.8
Psat5g004720 Pisum sativum HOM05D004987 ORTHO05D005960 5.1e-174 614.8 415 71.1
PGSC0003DMG400025463 Solanum tuberosum HOM05D004987 ORTHO05D005960 5.1e-174 614.8 416 72.6
Lalb_Chr20g0119411 Lupinus albus HOM05D004987 ORTHO05D005960 6.6e-174 614.4 415 71.6
Atru.chr3.1439 Acer truncatum HOM05D004987 ORTHO05D005960 8.7e-174 614.0 415 71.3
MSTRG.13111 Avicennia marina HOM05D004987 ORTHO05D005960 8.7e-174 614.0 416 73.1
Migut.M01428 Erythranthe guttata HOM05D004987 ORTHO05D005960 1.9e-173 612.8 415 71.8
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 4.3e-173 611.7 415 70.6
MD00G1058500 Malus domestica HOM05D004987 ORTHO05D005960 7.3e-173 610.9 415 71.6
DCAR_014269 Daucus carota HOM05D004987 ORTHO05D005960 3.6e-172 608.6 415 72.0
Lsat_1_v5_gn_6_62021 Lactuca sativa HOM05D004987 ORTHO05D005960 4.7e-172 608.2 415 71.1
HanXRQChr01g0004771 Helianthus annuus HOM05D004987 ORTHO05D005960 8.1e-172 607.4 415 70.6
Aqoxy5G03428 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 1.1e-171 607.1 416 70.7
CAN.G9.5 Capsicum annuum HOM05D004987 ORTHO05D005960 1.4e-171 606.7 415 72.0
Medtr3g117360 Medicago truncatula HOM05D004987 ORTHO05D005960 1.8e-171 606.3 415 70.1
Sopen08g019660 Solanum pennellii HOM05D004987 ORTHO05D005960 5.2e-171 604.7 415 71.3
MSTRG.14600 Avicennia marina HOM05D004987 ORTHO05D005960 6.9e-171 604.4 415 71.3
Cc09_g00600 Coffea canephora HOM05D004987 ORTHO05D005960 6.9e-171 604.4 415 70.8
Solyc08g065990.3 Solanum lycopersicum HOM05D004987 ORTHO05D005960 6.9e-171 604.4 415 71.1
Phvul.003G085301 Phaseolus vulgaris HOM05D004987 ORTHO05D005960 3.4e-170 602.1 415 70.1
MBI19_g25589_MAGBIO Magnolia biondii HOM05D004987 ORTHO05D005960 4.4e-170 601.7 417 70.0
AL7G38570 Arabidopsis lyrata HOM05D004987 ORTHO05D005960 9.9e-170 600.5 416 70.7
Carub.0007s2509 Capsella rubella HOM05D004987 ORTHO05D005960 1.3e-169 600.1 416 70.4
Oeu030104.1 Olea europaea HOM05D004987 ORTHO05D005960 1.7e-169 599.7 415 71.1
SGA_v2.0_scaffold54G19512 Striga asiatica HOM05D004987 ORTHO05D005960 2.2e-169 599.4 415 70.4
TPR.G32192 Trifolium pratense HOM05D004987 ORTHO05D005960 2.2e-169 599.4 416 70.9
AT4G16440 Arabidopsis thaliana HOM05D004987 ORTHO05D005960 3.8e-169 598.6 416 70.2
SalBow8G4301 Salvia bowleyana HOM05D004987 ORTHO05D005960 1.9e-168 596.3 415 69.2
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea HOM05D004987 ORTHO05D005960 4.2e-168 595.1 452 67.0
CARHR222790 Cardamine hirsuta HOM05D004987 ORTHO05D005960 4.2e-168 595.1 417 69.5
Thhalv10025117m.g Eutrema salsugineum HOM05D004987 ORTHO05D005960 5.4e-168 594.7 416 69.7
Sp7g14970 Schrenkiella parvula HOM05D004987 ORTHO05D005960 5.4e-168 594.7 416 69.5
PGR004G2886 Punica granatum HOM05D004987 ORTHO05D005960 7.1e-168 594.3 415 67.2
SGA_v2.0_scaffold111G31506 Striga asiatica HOM05D004987 ORTHO05D005960 1.6e-167 593.2 435 67.6
CDE07G0546 Ceratophyllum demersum HOM05D004987 ORTHO05D005960 3.3e-165 585.5 415 68.4
vmacro03626 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 9.6e-165 583.9 415 69.6
BcaC09g50343 Brassica carinata HOM05D004987 ORTHO05D005960 1.3e-164 583.6 416 68.8
BolC1t02590H Brassica oleracea HOM05D004987 ORTHO05D005960 1.3e-164 583.6 416 68.8
A01p21160 Brassica napus HOM05D004987 ORTHO05D005960 4.8e-164 581.6 416 68.0
PSO675G1563 Papaver somniferum HOM05D004987 ORTHO05D005960 4.8e-164 581.6 420 70.5
BcaNung00197 Brassica carinata HOM05D004987 ORTHO05D005960 8.1e-164 580.9 416 67.5
C01p26430 Brassica napus HOM05D004987 ORTHO05D005960 1.8e-163 579.7 416 68.0
unitig_749.g13618 Utricularia gibba HOM05D004987 ORTHO05D005960 2.6e-162 575.9 418 67.2
Medtr4g062080 Medicago truncatula HOM05D004987 ORTHO05D005960 5.8e-162 574.7 417 68.1
Os03g0748700 Oryza sativa ssp. japonica HOM05D004987 ORTHO05D005960 5.8e-162 574.7 415 68.0
PSO017G3064 Papaver somniferum HOM05D004987 ORTHO05D005960 9.9e-162 573.9 420 70.0
Nitab4.5_0002021g0020 Nicotiana tabacum HOM05D004987 ORTHO05D005960 2.9e-161 572.4 415 68.7
Oeu057036.1 Olea europaea HOM05D004987 ORTHO05D005960 4.9e-161 571.6 415 68.9
Zm00001eb214910 Zea mays HOM05D004987 ORTHO05D005960 4.9e-161 571.6 415 66.5
BraA01t02026Z Brassica rapa HOM05D004987 ORTHO05D005960 2.4e-160 569.3 440 64.5
ATR0594G143 Amborella trichopoda HOM05D004987 ORTHO05D005960 5.4e-160 568.2 417 67.1
Zm00001eb057200 Zea mays HOM05D004987 ORTHO05D005960 7.1e-160 567.8 415 66.0
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 2.5e-157 559.3 458 62.4
Lsat_1_v5_gn_0_32381 Lactuca sativa HOM05D004987 ORTHO05D005960 1.2e-154 550.4 398 68.8
SHI24440 Sapria himalayana HOM05D004987 ORTHO05D005960 2.6e-154 549.3 420 64.3
Sabra16G0013000 Salix brachista HOM05D004987 ORTHO05D005960 2.2e-153 546.2 503 55.9
Eucgr.D01441 Eucalyptus grandis HOM05D004987 ORTHO05D005960 1.0e-150 537.3 365 71.8
vmacro23178 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 4.0e-147 525.4 414 64.7
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis HOM05D004987 ORTHO05D005960 3.2e-144 515.8 418 61.2
Lsat_1_v5_gn_6_62041 Lactuca sativa HOM05D004987 ORTHO05D005960 4.2e-144 515.4 415 61.9
Pp3c6_16630 Physcomitrium patens HOM05D004987 ORTHO05D005960 1.2e-143 513.8 418 60.0
Cc10_g02370 Coffea canephora HOM05D004987 ORTHO05D005960 1.0e-142 510.8 487 57.3
Mapoly0020s0065 Marchantia polymorpha HOM05D004987 ORTHO05D005960 3.0e-142 509.2 419 61.1
SMO356G0034 Selaginella moellendorffii HOM05D004987 ORTHO05D005960 1.1e-141 507.3 416 61.8
MD10G1336400 Malus domestica HOM05D004987 ORTHO05D005960 3.7e-140 502.3 401 64.6
Lj2g0000431 Lotus japonicus HOM05D004987 ORTHO05D005960 6.3e-140 501.5 417 62.1
Cpa.g.sc27.253 Carica papaya HOM05D004987 ORTHO05D005960 3.8e-121 439.1 300 70.3
CsaV3_UNG059470 Cucumis sativus L. HOM05D004987 ORTHO05D005960 1.7e-116 423.7 413 53.5
Potri.016G008700 Populus trichocarpa HOM05D004987 ORTHO05D005960 6.7e-110 401.7 291 68.7
SEGI_15851 Sequoiadendron giganteum HOM05D004987 ORTHO05D005960 1.2e-90 337.8 254 63.4
MCO07G565 Micromonas commoda HOM05D004987 ORTHO05D005960 8.3e-84 315.1 443 44.5
Cre03.g200550 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 2.7e-82 310.1 520 37.1
Ciclev10027102m.g Citrus clementina HOM05D004987 ORTHO05D005960 3.3e-80 303.1 188 71.3
HPP92_013953 Vanilla planifolia HOM05D004987 ORTHO05D005960 6.0e-74 282.3 186 72.6
Atru.chr1.2336 Acer truncatum HOM05D004987 ORTHO05D005960 1.9e-67 260.8 378 43.4
AagrBONN_evm.TU.Sc2ySwM_368.3306 Anthoceros agrestis HOM05D004987 ORTHO05D005960 8.6e-65 251.9 211 57.3
PRCOL_00000051 Prasinoderma coloniale HOM05D004987 ORTHO05D005960 7.3e-64 248.8 460 36.7
ATR0751G100 Amborella trichopoda HOM05D004987 ORTHO05D005960 1.6e-63 247.7 256 51.2
Ciclev10004004m.g Citrus clementina HOM05D004987 ORTHO05D005960 3.6e-63 246.5 175 63.4
Lsat_1_v5_gn_6_62060 Lactuca sativa HOM05D004987 ORTHO05D005960 1.4e-62 244.6 144 81.9
TWI38G1931 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 1.4e-59 234.6 267 47.9
arahy.Tifrunner.gnm1.ann1.24PAJQ Arachis hypogaea HOM05D004987 ORTHO05D005960 4.4e-53 213.0 431 35.3
Aqoxy4G02991 Aquilegia oxysepala HOM05D000252 ORTHO05D000307 1.4e-46 191.4 174 55.2
Cfa026410 Carpinus fangiana HOM05D004987 ORTHO05D005960 1.5e-45 188.0 418 32.8
FAN21G3552 Fragaria x ananassa HOM05D004987 ORTHO05D005960 2.1e-42 177.6 118 76.3
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 6.9e-38 162.5 384 32.0
arahy.Tifrunner.gnm1.ann1.4D4U0P Arachis hypogaea HOM05D004987 ORTHO05D005960 3.4e-37 160.2 213 46.5
Cre09.g396600 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 1.9e-35 154.5 452 28.3
Cre03.g199800 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 1.5e-32 144.8 417 28.8
Aqoxy6G02697 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 5.6e-32 142.9 223 39.9
arahy.Tifrunner.gnm1.ann1.GKV1XW Arachis hypogaea HOM05D004987 ORTHO05D005960 1.4e-14 85.1 64 65.6
arahy.Tifrunner.gnm1.ann1.YI5A3W Arachis hypogaea HOM05D004987 ORTHO05D005960 2.2e-12 77.8 107 43.9
arahy.Tifrunner.gnm1.ann1.028TPL Arachis hypogaea HOM05D004987 ORTHO05D005960 1.0e-09 68.9 70 54.3
arahy.Tifrunner.gnm1.ann1.N1GFR4 Arachis hypogaea HOM05D004987 ORTHO05D005960 5.1e-09 66.6 54 51.9
AagrBONN_evm.TU.Sc2ySwM_368.1144 Anthoceros agrestis HOM05D004987 ORTHO05D005960 3.3e-08 63.9 66 54.5


User provided reference genes

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