Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62030243 Chenopodium quinoa HOM05D004223 ORTHO05D004792 3.2e-176 621.7 324 100.0
EL10Ac8g19745 Beta vulgaris HOM05D004223 ORTHO05D004792 2.2e-116 422.9 389 61.7
Sc05g0006430 Simmondsia chinensis HOM05D004223 ORTHO05D004792 9.1e-99 364.4 354 58.2
Nn3g20665 Nelumbo nucifera HOM05D004223 ORTHO05D004792 3.5e-98 362.5 355 55.8
Prupe.4G077600 Prunus persica HOM05D004223 ORTHO05D004792 2.8e-92 342.8 354 53.4
Dinv32277 Davidia involucrata HOM05D004223 ORTHO05D004792 3.7e-92 342.4 350 56.0
Hund21517 Selenicereus undatus HOM05D004223 ORTHO05D004792 7.8e-90 334.7 311 64.6
Ah.14g086580 Amaranthus hybridus HOM05D004223 ORTHO05D004792 6.6e-89 331.6 241 75.9
MD05G1287300 Malus domestica HOM05D004223 ORTHO05D004792 1.9e-88 330.1 352 51.7
MD10G1264700 Malus domestica HOM05D004223 ORTHO05D004792 6.1e-87 325.1 352 51.7
Sopen02g019940 Solanum pennellii HOM05D004223 ORTHO05D004792 2.6e-85 319.7 355 52.7
Solyc02g070860.4 Solanum lycopersicum HOM05D004223 ORTHO05D004792 5.8e-85 318.5 355 52.7
RcHm_v2.0_Chr5g0013511 Rosa chinensis HOM05D004223 ORTHO05D004792 1.3e-84 317.4 355 51.5
Actinidia19511 Actinidia chinensis HOM05D004223 ORTHO05D004792 4.9e-84 315.5 355 50.7
Phvul.002G194500 Phaseolus vulgaris HOM05D004223 ORTHO05D004792 4.9e-84 315.5 354 47.7
GSVIVG01021418001 Vitis vinifera HOM05D004223 ORTHO05D004792 6.4e-84 315.1 355 51.3
QL05p059118 Quercus lobata HOM05D004223 ORTHO05D004792 1.1e-83 314.3 356 51.7
Aqoxy1G01765 Aquilegia oxysepala HOM05D004223 ORTHO05D004792 1.9e-83 313.5 347 51.6
Duzib235G1300 Durio zibethinus HOM05D004223 ORTHO05D004792 2.4e-83 313.2 354 51.7
Actinidia07682 Actinidia chinensis HOM05D004223 ORTHO05D004792 3.2e-83 312.8 357 50.7
Ciclev10015725m.g Citrus clementina HOM05D004223 ORTHO05D004792 1.2e-82 310.8 358 50.8
Gohir.D10G040000 Gossypium hirsutum HOM05D004223 ORTHO05D004792 1.6e-82 310.5 356 50.3
Gorai.011G042100 Gossypium raimondii HOM05D004223 ORTHO05D004792 1.6e-82 310.5 356 50.3
Dinv30715 Davidia involucrata HOM05D004223 ORTHO05D004792 6.0e-82 308.5 268 60.8
FvH4_3g05960 Fragaria vesca HOM05D004223 ORTHO05D004792 2.3e-81 306.6 355 50.4
CiPaw.10G093300 Carya illinoinensis HOM05D004223 ORTHO05D004792 3.9e-81 305.8 355 49.3
Gohir.A10G039200 Gossypium hirsutum HOM05D004223 ORTHO05D004792 3.9e-81 305.8 353 50.1
Rhsim02G0155900 Rhododendron simsii HOM05D004223 ORTHO05D004792 6.6e-81 305.1 287 57.8
arahy.Tifrunner.gnm1.ann1.KB83YE Arachis hypogaea HOM05D004223 ORTHO05D004792 5.6e-80 302.0 354 48.0
CAN.G257.3 Capsicum annuum HOM05D004223 ORTHO05D004792 7.3e-80 301.6 355 51.3
Nitab4.5_0001655g0250 Nicotiana tabacum HOM05D004223 ORTHO05D004792 1.2e-79 300.8 303 55.1
arahy.Tifrunner.gnm1.ann1.EM1NUG Arachis hypogaea HOM05D004223 ORTHO05D004792 1.6e-79 300.4 354 47.7
PGR042G0116 Punica granatum HOM05D004223 ORTHO05D004792 1.6e-79 300.4 360 49.7
Glyma.08G084000 Glycine max HOM05D004223 ORTHO05D004792 3.6e-79 299.3 348 46.6
VMungo0251G1974 Vigna mungo HOM05D004223 ORTHO05D004792 8.0e-79 298.1 266 54.1
Glyma.05G129300 Glycine max HOM05D004223 ORTHO05D004792 1.4e-78 297.4 348 46.8
Manes.17G067700 Manihot esculenta HOM05D004223 ORTHO05D004792 1.5e-77 293.9 356 49.7
Thecc.06G153700 Theobroma cacao HOM05D004223 ORTHO05D004792 1.5e-77 293.9 356 51.1
Cc09_g08890 Coffea canephora HOM05D004223 ORTHO05D004792 1.7e-76 290.4 350 48.9
Lj4g0000090 Lotus japonicus HOM05D004223 ORTHO05D004792 1.7e-76 290.4 354 45.8
Cfa023352 Carpinus fangiana HOM05D004223 ORTHO05D004792 3.7e-76 289.3 347 47.6
DCAR_027947 Daucus carota HOM05D004223 ORTHO05D004792 3.7e-76 289.3 356 48.9
Oeu019944.1 Olea europaea HOM05D004223 ORTHO05D004792 6.4e-76 288.5 351 49.9
CANSAT35G1433 Cannabis sativa HOM05D004223 ORTHO05D004792 1.4e-75 287.3 358 47.8
Lalb_Chr12g0208891 Lupinus albus HOM05D004223 ORTHO05D004792 1.9e-75 287.0 354 46.0
PSO541G2658 Papaver somniferum HOM05D004223 ORTHO05D004792 1.9e-75 287.0 360 48.1
PSO675G0042 Papaver somniferum HOM05D004223 ORTHO05D004792 4.1e-75 285.8 360 47.8
Medtr4g096650 Medicago truncatula HOM05D004223 ORTHO05D004792 2.1e-74 283.5 346 45.4
TPR.G4831 Trifolium pratense HOM05D004223 ORTHO05D004792 4.6e-74 282.3 347 46.1
TWI53G0125 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 1.0e-73 281.2 317 53.0
Ciclev10031935m.g Citrus clementina HOM05D004223 ORTHO05D004792 1.7e-73 280.4 355 45.4
Migut.H01375 Erythranthe guttata HOM05D004223 ORTHO05D004792 5.1e-73 278.9 357 47.9
Potri.005G203600 Populus trichocarpa HOM05D004223 ORTHO05D004792 6.6e-73 278.5 343 47.5
Atru.chr6.2065 Acer truncatum HOM05D004223 ORTHO05D004792 2.5e-72 276.6 269 55.4
QL08p044806 Quercus lobata HOM05D004223 ORTHO05D004792 4.3e-72 275.8 279 52.3
TWI59G0075 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 1.6e-71 273.9 347 46.7
Psat7g090920 Pisum sativum HOM05D004223 ORTHO05D004792 1.4e-70 270.8 346 44.2
Potri.002G058500 Populus trichocarpa HOM05D004223 ORTHO05D004792 6.8e-70 268.5 347 46.7
Sed0004086 Sechium edule HOM05D004223 ORTHO05D004792 6.8e-70 268.5 287 50.5
Thecc.01G170900 Theobroma cacao HOM05D004223 ORTHO05D004792 1.2e-69 267.7 337 45.4
Oeu046871.2 Olea europaea HOM05D004223 ORTHO05D004792 1.5e-69 267.3 267 54.7
Migut.M00929 Erythranthe guttata HOM05D004223 ORTHO05D004792 2.0e-69 266.9 351 47.0
DCAR_003936 Daucus carota HOM05D004223 ORTHO05D004792 3.4e-69 266.2 261 55.9
HanXRQChr04g0118281 Helianthus annuus HOM05D004223 ORTHO05D004792 3.4e-69 266.2 346 46.5
Zm00001eb153380 Zea mays HOM05D004223 ORTHO05D004792 7.6e-69 265.0 346 43.9
ClCG02G018450 Citrullus lanatus HOM05D004223 ORTHO05D004792 9.9e-69 264.6 289 49.5
Duzib133G0675 Durio zibethinus HOM05D004223 ORTHO05D004792 1.3e-68 264.2 326 46.0
Os01g0751300 Oryza sativa ssp. japonica HOM05D004223 ORTHO05D004792 1.7e-68 263.8 344 44.2
MELO3C019676.2 Cucumis melo HOM05D004223 ORTHO05D004792 2.2e-68 263.5 286 49.3
FAN11G3669 Fragaria x ananassa HOM05D004223 ORTHO05D004792 3.7e-68 262.7 392 44.1
Sabra02G0047600 Salix brachista HOM05D004223 ORTHO05D004792 4.9e-68 262.3 261 55.6
MELO3C002724.2 Cucumis melo HOM05D004223 ORTHO05D004792 3.2e-67 259.6 344 47.1
Peaxi162Scf00214g01114 Petunia axillaris HOM05D004223 ORTHO05D004792 3.2e-67 259.6 239 59.4
Sed0020532 Sechium edule HOM05D004223 ORTHO05D004792 4.1e-67 259.2 283 49.5
Prupe.3G175100 Prunus persica HOM05D004223 ORTHO05D004792 3.5e-66 256.1 335 46.0
RcHm_v2.0_Chr2g0151741 Rosa chinensis HOM05D004223 ORTHO05D004792 6.0e-66 255.4 287 50.2
Sed0009895 Sechium edule HOM05D004223 ORTHO05D004792 1.3e-65 254.2 345 47.2
FvH4_6g38510 Fragaria vesca HOM05D004223 ORTHO05D004792 5.1e-65 252.3 342 45.0
CsaV3_6G013790 Cucumis sativus L. HOM05D004223 ORTHO05D004792 1.5e-64 250.8 286 48.6
CDE09G0669 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 2.4e-62 243.4 258 52.3
FAN16G0695 Fragaria x ananassa HOM05D004223 ORTHO05D004792 2.4e-62 243.4 311 48.2
MSTRG.7472 Avicennia marina HOM05D004223 ORTHO05D004792 5.2e-62 242.3 243 54.3
Lsat_1_v5_gn_7_32901 Lactuca sativa HOM05D004223 ORTHO05D004792 1.2e-61 241.1 327 46.8
Nitab4.5_0001040g0160 Nicotiana tabacum HOM05D004223 ORTHO05D004792 1.5e-61 240.7 407 40.8
THA.LOC104803347 Tarenaya hassleriana HOM05D004223 ORTHO05D004792 5.8e-61 238.8 353 39.9
SalBow8G4695 Salvia bowleyana HOM05D004223 ORTHO05D004792 9.9e-61 238.0 300 46.0
SalBow8G5598 Salvia bowleyana HOM05D004223 ORTHO05D004792 9.9e-61 238.0 300 46.0
TPR.G12676 Trifolium pratense HOM05D004223 ORTHO05D004792 1.3e-60 237.7 359 39.8
Medtr5g091370 Medicago truncatula HOM05D004223 ORTHO05D004792 1.7e-60 237.3 354 40.7
Ca_06273_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 2.2e-60 236.9 351 41.0
MD17G1137300 Malus domestica HOM05D004223 ORTHO05D004792 2.9e-60 236.5 351 42.2
ATR0585G108 Amborella trichopoda HOM05D004223 ORTHO05D004792 1.9e-59 233.8 348 42.8
Gohir.A07G080900 Gossypium hirsutum HOM05D004223 ORTHO05D004792 1.9e-59 233.8 349 42.4
Lsat_1_v5_gn_7_7501 Lactuca sativa HOM05D004223 ORTHO05D004792 3.2e-59 233.0 329 46.8
AL5G40980 Arabidopsis lyrata HOM05D004223 ORTHO05D004792 7.1e-59 231.9 349 38.7
ClCG03G006980 Citrullus lanatus HOM05D004223 ORTHO05D004792 7.1e-59 231.9 412 41.0
Aa31LG1G24730 Aethionema arabicum HOM05D004223 ORTHO05D004792 9.3e-59 231.5 348 40.8
BraA07t30092Z Brassica rapa HOM05D000230 ORTHO05D000176 2.7e-58 229.9 352 39.5
FAN02G1578 Fragaria x ananassa HOM05D004223 ORTHO05D004792 7.8e-58 228.4 328 43.6
PGR042G1019 Punica granatum HOM05D004223 ORTHO05D004792 1.0e-57 228.0 349 41.5
Gorai.001G092500 Gossypium raimondii HOM05D004223 ORTHO05D004792 1.7e-57 227.3 347 41.8
COL.COLO4_07169 Corchorus olitorius HOM05D000230 ORTHO05D000176 2.3e-57 226.9 270 47.4
ECA236G2733 Erigeron canadensis HOM05D004223 ORTHO05D004792 3.0e-57 226.5 291 49.1
AT3G59090 Arabidopsis thaliana HOM05D004223 ORTHO05D004792 8.7e-57 224.9 352 38.9
COL.COLO4_06072 Corchorus olitorius HOM05D004223 ORTHO05D004792 8.7e-57 224.9 198 62.6
CsaV3_1G032560 Cucumis sativus L. HOM05D004223 ORTHO05D004792 4.3e-56 222.6 294 49.7
CARHR169510 Cardamine hirsuta HOM05D004223 ORTHO05D004792 5.6e-56 222.2 349 38.4
Duzib160G0026 Durio zibethinus HOM05D004223 ORTHO05D004792 2.1e-55 220.3 352 42.0
Carub.0005s2585 Capsella rubella HOM05D004223 ORTHO05D004792 1.4e-54 217.6 356 38.2
Eucgr.A02011 Eucalyptus grandis HOM05D004223 ORTHO05D004792 2.4e-54 216.9 261 47.5
TAR624G0476 Trochodendron aralioides HOM05D004223 ORTHO05D004792 2.4e-54 216.9 245 52.7
C06p25880 Brassica napus HOM05D000230 ORTHO05D000176 4.0e-54 216.1 352 38.1
BolC6t37750H Brassica oleracea HOM05D000230 ORTHO05D000176 4.0e-54 216.1 352 38.1
vmacro10944 Vaccinium macrocarpon HOM05D004223 ORTHO05D004792 4.0e-54 216.1 428 35.5
BcaC07g40242 Brassica carinata HOM05D004223 ORTHO05D004792 6.9e-54 215.3 357 37.5
SGA_v2.0_scaffold1G00153 Striga asiatica HOM05D004223 ORTHO05D004792 1.2e-53 214.5 354 41.8
A07p24480 Brassica napus HOM05D000230 ORTHO05D000176 1.5e-53 214.2 352 38.1
CiPaw.09G126400 Carya illinoinensis HOM05D004223 ORTHO05D004792 3.4e-53 213.0 244 53.3
Ca_18272_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 3.4e-53 213.0 185 56.2
Sp5g03900 Schrenkiella parvula HOM05D004223 ORTHO05D004792 4.4e-53 212.6 356 36.8
C08p34260 Brassica napus HOM05D004223 ORTHO05D004792 1.3e-52 211.1 353 38.0
Thhalv10006050m.g Eutrema salsugineum HOM05D004223 ORTHO05D004792 1.7e-52 210.7 349 37.8
HPP92_021479 Vanilla planifolia HOM05D004223 ORTHO05D004792 1.7e-52 210.7 349 40.4
BcaC07g40241 Brassica carinata HOM05D004223 ORTHO05D004792 5.4e-51 205.7 289 41.2
Atru.chr10.1339 Acer truncatum HOM05D004223 ORTHO05D004792 7.1e-51 205.3 160 65.6
BraA09t40587Z Brassica rapa HOM05D004223 ORTHO05D004792 7.1e-51 205.3 366 36.6
A09p51500 Brassica napus HOM05D004223 ORTHO05D004792 1.6e-50 204.1 284 41.5
BolC8t51023H Brassica oleracea HOM05D004223 ORTHO05D004792 3.5e-50 203.0 284 41.5
unitig_92.g28154 Utricularia gibba HOM05D004223 ORTHO05D004792 2.5e-48 196.8 354 37.6
BcaC08g44958 Brassica carinata HOM05D000230 ORTHO05D000176 1.1e-46 191.4 349 37.0
Psat2g016680 Pisum sativum HOM05D004223 ORTHO05D004792 1.4e-46 191.0 292 39.4
Gohir.D07G086500 Gossypium hirsutum HOM05D004223 ORTHO05D004792 1.5e-45 187.6 346 38.4
Mapoly0056s0052 Marchantia polymorpha HOM05D004223 ORTHO05D004792 6.4e-44 182.2 309 38.8
BcaB02g07485 Brassica carinata HOM05D004223 ORTHO05D004792 7.1e-43 178.7 398 32.7
Pp3c6_6380 Physcomitrium patens HOM05D004223 ORTHO05D004792 1.2e-42 177.9 300 38.3
Actinidia39561 Actinidia chinensis HOM05D004223 ORTHO05D004792 6.0e-42 175.6 276 42.4
MBI10_g27412_MAGBIO Magnolia biondii HOM05D004223 ORTHO05D004792 1.0e-41 174.9 319 41.1
Pp3c5_22420 Physcomitrium patens HOM05D004223 ORTHO05D004792 5.6e-40 169.1 310 36.8
SGA_v2.0_scaffold333G49006 Striga asiatica HOM05D004223 ORTHO05D004792 1.3e-39 167.9 225 45.8
Pp3c25_8320 Physcomitrium patens HOM05D004223 ORTHO05D004792 3.2e-35 153.3 332 32.8
Haze_05551 Corylus avellana HOM05D004223 ORTHO05D004792 5.5e-35 152.5 121 65.3
SMO296G0001 Selaginella moellendorffii HOM05D004223 ORTHO05D004792 9.3e-35 151.8 358 33.2
FAN14G4329 Fragaria x ananassa HOM05D004223 ORTHO05D004792 3.9e-33 146.4 313 35.1
CSS0012222 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 8.7e-33 145.2 110 66.4
Duzib138G1261 Durio zibethinus HOM05D004223 ORTHO05D004792 3.3e-32 143.3 313 35.8
Oeu040113.1 Olea europaea HOM05D004223 ORTHO05D004792 9.6e-32 141.7 155 50.3
unitig_37.g12105 Utricularia gibba HOM05D004223 ORTHO05D004792 6.2e-31 139.0 148 49.3
SalBow7G0638 Salvia bowleyana HOM05D004223 ORTHO05D004792 2.0e-29 134.0 201 43.8
SMO174G0155 Selaginella moellendorffii HOM05D004223 ORTHO05D004792 2.2e-28 130.6 261 35.6
CSS0013327 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 9.3e-27 125.2 110 61.8
Haze_13521 Corylus avellana HOM05D004223 ORTHO05D004792 5.1e-25 119.4 109 55.0
CDE02G0113 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 1.5e-24 117.9 124 50.8
FAN21G3874 Fragaria x ananassa HOM05D004223 ORTHO05D004792 2.8e-23 113.6 153 45.1
Dinv05252 Davidia involucrata HOM05D004223 ORTHO05D004792 2.5e-19 100.5 92 57.6
FAN05G0022 Fragaria x ananassa HOM05D004223 ORTHO05D004792 1.8e-17 94.4 266 34.6
Dinv05253 Davidia involucrata HOM05D004223 ORTHO05D004792 8.8e-17 92.0 90 56.7
QL05p059167 Quercus lobata HOM05D004223 ORTHO05D004792 4.8e-15 86.3 92 48.9
unitig_37.g12104 Utricularia gibba HOM05D004223 ORTHO05D004792 8.2e-15 85.5 174 37.9
CSS0014222 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 6.9e-14 82.4 55 76.4
Actinidia22922 Actinidia chinensis HOM05D004223 ORTHO05D004792 2.5e-11 73.9 86 50.0
Atru.chr10.1338 Acer truncatum HOM05D004223 ORTHO05D004792 2.1e-10 70.9 125 40.0
PGSC0003DMG400012960 Solanum tuberosum HOM05D004223 ORTHO05D004792 9.7e-08 62.0 81 45.7
MSTRG.16215 Avicennia marina HOM05D004223 ORTHO05D004792 1.3e-07 61.6 85 44.7


User provided reference genes

Program Settings