Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62030180 Chenopodium quinoa HOM05D005657 ORTHO05D007104 9.1e-151 537.0 258 100.0
AUR62002729 Chenopodium quinoa HOM05D005657 ORTHO05D007104 2.0e-97 359.8 179 93.9
EL10Ac8g19662 Beta vulgaris HOM05D005657 ORTHO05D007104 3.5e-86 322.4 180 80.6
Ah.09g232540 Amaranthus hybridus HOM05D005657 ORTHO05D007104 1.2e-78 297.4 182 77.5
Cfa000932 Carpinus fangiana HOM05D005657 ORTHO05D007104 2.4e-74 283.1 188 71.8
CiPaw.09G122400 Carya illinoinensis HOM05D005657 ORTHO05D007104 2.4e-74 283.1 172 75.6
Cc07_g20130 Coffea canephora HOM05D005657 ORTHO05D007104 3.1e-74 282.7 174 73.0
Hma1.2p1_0020F.1_g014110 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 4.0e-74 282.3 174 75.9
Gohir.A05G147800 Gossypium hirsutum HOM05D005657 ORTHO05D007104 5.3e-74 282.0 172 73.3
Gohir.D05G150300 Gossypium hirsutum HOM05D005657 ORTHO05D007104 5.3e-74 282.0 172 73.3
Gorai.009G154400 Gossypium raimondii HOM05D005657 ORTHO05D007104 5.3e-74 282.0 172 73.3
Lj6g0016438 Lotus japonicus HOM05D005657 ORTHO05D007104 6.9e-74 281.6 176 73.9
DCAR_007885 Daucus carota HOM05D005657 ORTHO05D007104 1.5e-73 280.4 173 74.0
VMungo0540G0312 Vigna mungo HOM05D005657 ORTHO05D007104 1.5e-73 280.4 176 72.7
Ciclev10015992m.g Citrus clementina HOM05D005657 ORTHO05D007104 2.6e-73 279.6 179 70.9
arahy.Tifrunner.gnm1.ann1.PL5EIV Arachis hypogaea HOM05D005657 ORTHO05D007104 3.4e-73 279.3 176 72.2
Sc24g0001740 Simmondsia chinensis HOM05D005657 ORTHO05D007104 3.4e-73 279.3 187 71.1
arahy.Tifrunner.gnm1.ann1.1GZ3A6 Arachis hypogaea HOM05D005657 ORTHO05D007104 4.5e-73 278.9 176 71.6
Eucgr.E01441 Eucalyptus grandis HOM05D005657 ORTHO05D007104 4.5e-73 278.9 174 74.1
HanXRQChr16g0525711 Helianthus annuus HOM05D005657 ORTHO05D007104 4.5e-73 278.9 178 69.1
Thecc.06G148800 Theobroma cacao HOM05D005657 ORTHO05D007104 2.2e-72 276.6 186 66.7
Actinidia39582 Actinidia chinensis HOM05D005657 ORTHO05D007104 2.9e-72 276.2 174 69.5
Potri.011G084000 Populus trichocarpa HOM05D005657 ORTHO05D007104 2.9e-72 276.2 173 72.8
Psat1g188200 Pisum sativum HOM05D005657 ORTHO05D007104 1.1e-71 274.2 173 71.7
Lalb_Chr18g0055371 Lupinus albus HOM05D005657 ORTHO05D007104 1.4e-71 273.9 178 70.8
MD05G1282500 Malus domestica HOM05D005657 ORTHO05D007104 1.4e-71 273.9 197 68.5
PGR031G0971 Punica granatum HOM05D005657 ORTHO05D007104 1.4e-71 273.9 192 67.7
Ca_00535_v3 Cicer arietinum L. HOM05D005657 ORTHO05D007104 1.9e-71 273.5 186 66.7
GSVIVG01021513001 Vitis vinifera HOM05D005657 ORTHO05D007104 1.9e-71 273.5 190 68.4
Aa31LG6G5550 Aethionema arabicum HOM05D005657 ORTHO05D007104 2.5e-71 273.1 172 71.5
CAN.G1744.1 Capsicum annuum HOM05D005657 ORTHO05D007104 3.2e-71 272.7 178 71.3
Lj2A319G39 Lonicera japonica HOM05D005657 ORTHO05D007104 4.2e-71 272.3 197 66.5
Glyma.13G219000 Glycine max HOM05D005657 ORTHO05D007104 5.5e-71 271.9 176 71.0
CANSAT35G1510 Cannabis sativa HOM05D005657 ORTHO05D007104 7.1e-71 271.6 173 71.1
Medtr2g019220 Medicago truncatula HOM05D005657 ORTHO05D007104 7.1e-71 271.6 172 70.9
QL05p057428 Quercus lobata HOM05D005657 ORTHO05D007104 1.2e-70 270.8 178 71.3
Sabra11G0066600 Salix brachista HOM05D005657 ORTHO05D007104 1.2e-70 270.8 173 71.7
PSO339G2615 Papaver somniferum HOM05D005657 ORTHO05D007104 4.6e-70 268.9 194 66.0
SalBow8G0891 Salvia bowleyana HOM05D005657 ORTHO05D007104 4.6e-70 268.9 172 69.2
TWI53G0207 Tripterygium wilfordii HOM05D005657 ORTHO05D007104 4.6e-70 268.9 174 69.5
TAR626G1592 Trochodendron aralioides HOM05D005657 ORTHO05D007104 6.0e-70 268.5 182 67.6
RcHm_v2.0_Chr5g0014371 Rosa chinensis HOM05D005657 ORTHO05D007104 7.9e-70 268.1 172 73.8
AT1G30130 Arabidopsis thaliana HOM05D005657 ORTHO05D007104 1.3e-69 267.3 171 70.8
ClCG01G024690 Citrullus lanatus HOM05D005657 ORTHO05D007104 1.3e-69 267.3 174 70.1
FvH4_3g05380 Fragaria vesca HOM05D005657 ORTHO05D007104 2.3e-69 266.5 172 74.4
Oeu042460.1 Olea europaea HOM05D005657 ORTHO05D007104 3.0e-69 266.2 175 69.1
Solyc05g053950.4 Solanum lycopersicum HOM05D005657 ORTHO05D007104 3.0e-69 266.2 194 67.0
Sopen05g032420 Solanum pennellii HOM05D005657 ORTHO05D007104 3.0e-69 266.2 194 67.0
PGSC0003DMG401013075 Solanum tuberosum HOM05D005657 ORTHO05D007104 3.0e-69 266.2 179 70.4
Manes.17G071500 Manihot esculenta HOM05D005657 ORTHO05D007104 3.9e-69 265.8 171 71.3
Haze_05617 Corylus avellana HOM05D005657 ORTHO05D007104 5.1e-69 265.4 221 60.6
FAN21G3134 Fragaria x ananassa HOM05D005657 ORTHO05D007104 6.7e-69 265.0 172 73.8
Prupe.4G082300 Prunus persica HOM05D005657 ORTHO05D007104 8.7e-69 264.6 196 65.8
BcaC01g00157 Brassica carinata HOM05D005657 ORTHO05D007104 1.9e-68 263.5 207 60.9
A08p24690 Brassica napus HOM05D005657 ORTHO05D007104 2.5e-68 263.1 208 61.1
Nn4g26588 Nelumbo nucifera HOM05D005657 ORTHO05D007104 2.5e-68 263.1 172 68.6
Aqoxy1G01688 Aquilegia oxysepala HOM05D005657 ORTHO05D007104 3.3e-68 262.7 198 62.1
FAN16G0196 Fragaria x ananassa HOM05D005657 ORTHO05D007104 3.3e-68 262.7 172 73.3
BolC3t19896H Brassica oleracea HOM05D005657 ORTHO05D007104 5.7e-68 261.9 208 61.5
Duzib192G0691 Durio zibethinus HOM05D005657 ORTHO05D007104 5.7e-68 261.9 188 64.9
Sp1g25990 Schrenkiella parvula HOM05D005657 ORTHO05D007104 5.7e-68 261.9 187 65.8
Thhalv10008271m.g Eutrema salsugineum HOM05D005657 ORTHO05D007104 7.4e-68 261.5 208 60.6
Nitab4.5_0000484g0050 Nicotiana tabacum HOM05D005657 ORTHO05D007104 9.7e-68 261.2 197 65.5
Carub.0001s2836 Capsella rubella HOM05D005657 ORTHO05D007104 1.6e-67 260.4 171 68.4
C03p76410 Brassica napus HOM05D005657 ORTHO05D007104 2.2e-67 260.0 207 59.9
CARHR029280 Cardamine hirsuta HOM05D005657 ORTHO05D007104 2.8e-67 259.6 177 67.8
BcaB03g12197 Brassica carinata HOM05D005657 ORTHO05D007104 3.7e-67 259.2 208 60.6
BraA08t34424Z Brassica rapa HOM05D005657 ORTHO05D007104 3.7e-67 259.2 208 60.1
MELO3C007126.2 Cucumis melo HOM05D005657 ORTHO05D007104 6.3e-67 258.5 172 68.6
PSO384G4094 Papaver somniferum HOM05D005657 ORTHO05D007104 6.3e-67 258.5 194 63.4
TPR.G26242 Trifolium pratense HOM05D005657 ORTHO05D007104 1.8e-66 256.9 186 64.0
CsaV3_6G051800 Cucumis sativus L. HOM05D005657 ORTHO05D007104 2.4e-66 256.5 174 67.8
FAN25G2659 Fragaria x ananassa HOM05D005657 ORTHO05D007104 2.4e-66 256.5 167 74.3
Sed0002032 Sechium edule HOM05D005657 ORTHO05D007104 3.1e-66 256.1 174 66.1
MSTRG.16252 Avicennia marina HOM05D005657 ORTHO05D007104 4.1e-66 255.8 172 68.0
MBI18_g24473_MAGBIO Magnolia biondii HOM05D005657 ORTHO05D007104 2.0e-65 253.4 192 63.0
ATR1098G050 Amborella trichopoda HOM05D005657 ORTHO05D007104 3.4e-65 252.7 189 64.0
CSS0046586 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 4.5e-65 252.3 173 64.7
CSS0036233 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 1.3e-64 250.8 173 64.2
ECA234G1983 Erigeron canadensis HOM05D005657 ORTHO05D007104 6.5e-64 248.4 182 63.2
TPR.G26236 Trifolium pratense HOM05D005657 ORTHO05D007104 6.5e-64 248.4 174 62.1
Lsat_1_v5_gn_4_29400 Lactuca sativa HOM05D005657 ORTHO05D007104 1.4e-63 247.3 173 65.9
vmacro10957 Vaccinium macrocarpon HOM05D005657 ORTHO05D007104 1.9e-63 246.9 223 53.4
THA.LOC104812673 Tarenaya hassleriana HOM05D005657 ORTHO05D007104 5.5e-63 245.4 178 65.2
SEGI_34988 Sequoiadendron giganteum HOM05D005657 ORTHO05D007104 4.8e-59 232.3 169 61.5
HPP92_012186 Vanilla planifolia HOM05D005657 ORTHO05D007104 4.1e-58 229.2 203 56.2
Peaxi162Scf00394g00119 Petunia axillaris HOM05D005657 ORTHO05D007104 2.6e-57 226.5 169 66.3
Atru.chr10.1193 Acer truncatum HOM05D005657 ORTHO05D007104 3.4e-57 226.1 170 64.1
Zm00001eb300160 Zea mays HOM05D005657 ORTHO05D007104 7.7e-57 224.9 177 60.5
DCAR_027905 Daucus carota HOM05D005657 ORTHO05D007104 4.2e-55 219.2 195 54.4
Dinv30768 Davidia involucrata HOM05D005657 ORTHO05D007104 5.5e-55 218.8 136 75.0
Rhsim02G0159200 Rhododendron simsii HOM05D005657 ORTHO05D007104 3.6e-54 216.1 178 59.6
SMO364G0117 Selaginella moellendorffii HOM05D005657 ORTHO05D007104 3.9e-53 212.6 171 60.8
Migut.D01761 Erythranthe guttata HOM05D005657 ORTHO05D007104 1.5e-52 210.7 135 71.9
BcaB03g12196 Brassica carinata HOM05D005657 ORTHO05D007104 2.0e-52 210.3 159 62.9
Hund15862 Selenicereus undatus HOM05D005657 ORTHO05D007104 7.4e-52 208.4 174 61.5
Mapoly0156s0023 Marchantia polymorpha HOM05D005657 ORTHO05D007104 2.2e-51 206.8 167 59.9
Nitab4.5_0000717g0030 Nicotiana tabacum HOM05D005657 ORTHO05D007104 2.8e-51 206.5 135 73.3
DCAR_027907 Daucus carota HOM05D005657 ORTHO05D007104 2.4e-50 203.4 175 55.4
Phvul.006G165700 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 7.0e-50 201.8 176 56.2
Pp3c19_5890 Physcomitrium patens HOM05D005657 ORTHO05D007104 1.2e-49 201.1 162 58.6
DCAR_027906 Daucus carota HOM05D005657 ORTHO05D007104 3.8e-48 196.1 175 52.6
AagrBONN_evm.TU.Sc2ySwM_117.1613 Anthoceros agrestis HOM05D001134 ORTHO05D001035 5.0e-48 195.7 188 53.7
AUR62002725 Chenopodium quinoa HOM05D005657 ORTHO05D007104 1.1e-47 194.5 102 90.2
Rhsim02G0159300 Rhododendron simsii HOM05D005657 ORTHO05D007104 1.1e-47 194.5 175 53.1
SGA_v2.0_scaffold333G48980 Striga asiatica HOM05D005657 ORTHO05D007104 1.4e-47 194.1 126 70.6
CDE01G0002 Ceratophyllum demersum HOM05D005657 ORTHO05D007104 1.9e-47 193.7 154 61.7
FAN11G2536 Fragaria x ananassa HOM05D005657 ORTHO05D007104 4.2e-47 192.6 174 58.0
SalBow2G3627 Salvia bowleyana HOM05D005657 ORTHO05D007104 2.7e-46 189.9 172 48.8
Os07g0153300 Oryza sativa ssp. japonica HOM05D005657 ORTHO05D007104 1.8e-42 177.2 144 61.1
Hma1.2p1_0020F.1_g014120 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 6.8e-37 158.7 105 69.5
Actinidia07705 Actinidia chinensis HOM05D005657 ORTHO05D007104 8.8e-37 158.3 180 46.1
PGSC0003DMG400002455 Solanum tuberosum HOM05D005657 ORTHO05D007104 2.5e-31 140.2 109 60.6
CBR_g39195 Chara braunii HOM05D005657 ORTHO05D007104 9.4e-31 138.3 159 45.3
Cre06.g269300 Chlamydomonas reinhardtii HOM05D005657 ORTHO05D007104 5.2e-29 132.5 199 38.7
MCO14G385 Micromonas commoda HOM05D005657 ORTHO05D007104 7.5e-28 128.6 206 40.3
Hma1.2p1_0020F.1_g014100 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 9.8e-28 128.3 69 85.5
Glyma.15G093200 Glycine max HOM05D005657 ORTHO05D007104 2.4e-26 123.6 69 84.1
SalBow2G2566 Salvia bowleyana HOM05D005657 ORTHO05D007104 5.2e-21 105.9 109 47.7
PRCOL_00005919 Prasinoderma coloniale HOM05D005657 ORTHO05D007104 1.5e-20 104.4 186 34.9
SGA_v2.0_scaffold37G14914 Striga asiatica HOM05D005657 ORTHO05D007104 8.3e-19 98.6 61 72.1
unitig_26.g9757 Utricularia gibba HOM05D005657 ORTHO05D007104 7.3e-15 85.5 67 61.2
Glyma.08G293333 Glycine max HOM05D005657 ORTHO05D007104 3.1e-13 80.1 51 72.5
unitig_26.g9756 Utricularia gibba HOM05D005657 ORTHO05D007104 1.4e-10 71.2 42 76.2
TPR.G26247 Trifolium pratense HOM05D005657 ORTHO05D007104 3.2e-10 70.1 39 84.6
Phvul.007G245866 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 2.7e-09 67.0 47 61.7
Duzib160G0546 Durio zibethinus HOM05D005657 ORTHO05D007104 4.6e-09 66.2 49 53.1
CSS0012720 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 1.5e-07 61.2 36 69.4
MCO01G569 Micromonas commoda HOM05D005657 ORTHO05D007104 4.3e-07 59.7 42 64.3
SGA_v2.0_scaffold119G32786 Striga asiatica HOM05D005657 ORTHO05D007104 9.5e-07 58.5 31 80.6
SGA_v2.0_scaffold118G32549 Striga asiatica HOM05D005657 ORTHO05D007104 2.8e-06 57.0 40 65.0


User provided reference genes

Program Settings