Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62030173 Chenopodium quinoa HOM05D006793 ORTHO05D003476 8.0e-280 966.5 493 100.0
AUR62002713 Chenopodium quinoa HOM05D006793 ORTHO05D003476 2.7e-251 871.7 493 90.9
EL10Ac8g19653 Beta vulgaris HOM05D006793 ORTHO05D003476 2.2e-136 490.0 495 56.8
AUR62002709 Chenopodium quinoa HOM05D006793 ORTHO05D003476 5.3e-66 256.1 171 78.9
AUR62030168 Chenopodium quinoa HOM05D006793 ORTHO05D003476 6.5e-64 249.2 176 77.8
MD02G1241700 Malus domestica HOM05D006793 ORTHO05D003476 3.1e-58 230.3 526 36.1
Potri.008G029500 Populus trichocarpa HOM05D006793 ORTHO05D003476 5.3e-58 229.6 529 35.2
TAR636G1084 Trochodendron aralioides HOM05D006793 ORTHO05D003476 3.6e-54 216.9 518 33.2
CANSAT56G4476 Cannabis sativa HOM05D006793 ORTHO05D003476 1.4e-53 214.9 522 34.5
Sabra10G0179700 Salix brachista HOM05D006793 ORTHO05D003476 2.0e-52 211.1 536 34.1
Actinidia06714 Actinidia chinensis HOM05D006793 ORTHO05D003476 1.7e-51 208.0 510 34.7
Gohir.A01G128900 Gossypium hirsutum HOM05D006793 ORTHO05D003476 1.7e-51 208.0 514 33.5
COL.COLO4_32868 Corchorus olitorius HOM05D006793 ORTHO05D003476 2.2e-51 207.6 569 31.1
Gohir.D01G118500 Gossypium hirsutum HOM05D006793 ORTHO05D003476 2.2e-51 207.6 511 33.9
Aqoxy2G01557 Aquilegia oxysepala HOM05D006793 ORTHO05D003476 3.7e-51 206.8 524 34.2
PGR142G3005 Punica granatum HOM05D006793 ORTHO05D003476 8.3e-51 205.7 529 33.3
Sabra08G0019600 Salix brachista HOM05D006793 ORTHO05D003476 8.3e-51 205.7 507 34.1
Prupe.2G095200 Prunus persica HOM05D006793 ORTHO05D003476 1.1e-50 205.3 513 32.6
Sopen11g003710 Solanum pennellii HOM05D006793 ORTHO05D003476 1.1e-50 205.3 557 31.6
Sed0017585 Sechium edule HOM05D006793 ORTHO05D003476 1.8e-50 204.5 515 33.6
Sc20g0001440 Simmondsia chinensis HOM05D006793 ORTHO05D003476 3.1e-50 203.8 292 44.9
Ciclev10031613m.g Citrus clementina HOM05D006793 ORTHO05D003476 4.1e-50 203.4 510 35.1
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 5.4e-50 203.0 508 35.4
Gorai.002G144500 Gossypium raimondii HOM05D006793 ORTHO05D003476 7.0e-50 202.6 513 33.1
Duzib114G0110 Durio zibethinus HOM05D006793 ORTHO05D003476 9.1e-50 202.2 519 33.3
PGSC0003DMG400027329 Solanum tuberosum HOM05D006793 ORTHO05D003476 9.1e-50 202.2 568 31.2
TAR476G0002 Trochodendron aralioides HOM05D006793 ORTHO05D003476 9.1e-50 202.2 519 34.9
Manes.07G093300 Manihot esculenta HOM05D006793 ORTHO05D003476 1.2e-49 201.8 508 33.7
Thecc.10G090800 Theobroma cacao HOM05D006793 ORTHO05D003476 1.2e-49 201.8 521 32.6
Duzib128G0427 Durio zibethinus HOM05D006793 ORTHO05D003476 1.6e-49 201.4 507 33.7
Hma1.2p1_0454F.1_g156300 Hydrangea macrophylla HOM05D006793 ORTHO05D003476 2.0e-49 201.1 503 32.4
Nn6g35167 Nelumbo nucifera HOM05D006793 ORTHO05D003476 2.7e-49 200.7 517 33.5
FvH4_7g06800 Fragaria vesca HOM05D006793 ORTHO05D003476 3.5e-49 200.3 526 32.1
FAN01G0293 Fragaria x ananassa HOM05D006793 ORTHO05D003476 4.5e-49 199.9 522 31.4
FAN10G1411 Fragaria x ananassa HOM05D006793 ORTHO05D003476 4.5e-49 199.9 520 30.8
Potri.010G231900 Populus trichocarpa HOM05D006793 ORTHO05D003476 5.9e-49 199.5 575 32.9
FAN06G1743 Fragaria x ananassa HOM05D006793 ORTHO05D003476 7.7e-49 199.1 526 31.9
Solyc11g007850.2 Solanum lycopersicum HOM05D006793 ORTHO05D003476 1.0e-48 198.7 554 31.2
Rhsim03G0110800 Rhododendron simsii HOM05D006793 ORTHO05D003476 1.3e-48 198.4 537 32.8
Nn2g13905 Nelumbo nucifera HOM05D006793 ORTHO05D003476 2.9e-48 197.2 518 33.8
GSVIVG01005025001 Vitis vinifera HOM05D006793 ORTHO05D003476 2.9e-48 197.2 512 35.5
Phvul.007G141300 Phaseolus vulgaris HOM05D006793 ORTHO05D003476 3.8e-48 196.8 527 33.2
Peaxi162Scf00321g00037 Petunia axillaris HOM05D006793 ORTHO05D003476 5.0e-48 196.4 522 33.9
Cfa001770 Carpinus fangiana HOM05D006793 ORTHO05D003476 1.5e-47 194.9 534 32.4
Manes.10G053400 Manihot esculenta HOM05D006793 ORTHO05D003476 2.5e-47 194.1 509 35.4
Nitab4.5_0006383g0010 Nicotiana tabacum HOM05D006793 ORTHO05D003476 5.5e-47 193.0 530 33.0
QL08p052921 Quercus lobata HOM05D006793 ORTHO05D003476 5.5e-47 193.0 522 32.6
Dinv31270 Davidia involucrata HOM05D006793 ORTHO05D003476 7.2e-47 192.6 504 33.9
Migut.F01893 Erythranthe guttata HOM05D006793 ORTHO05D003476 1.2e-46 191.8 504 32.7
CiPaw.01G264600 Carya illinoinensis HOM05D006793 ORTHO05D003476 3.6e-46 190.3 523 33.3
Nitab4.5_0000593g0350 Nicotiana tabacum HOM05D006793 ORTHO05D003476 1.0e-45 188.7 540 33.0
Atru.chr11.746 Acer truncatum HOM05D006793 ORTHO05D003476 1.4e-45 188.3 613 30.5
SalBow4G0791 Salvia bowleyana HOM05D006793 ORTHO05D003476 1.4e-45 188.3 510 32.2
PSO801G0244 Papaver somniferum HOM05D006793 ORTHO05D003476 3.0e-45 187.2 498 31.7
arahy.Tifrunner.gnm1.ann1.BT04C1 Arachis hypogaea HOM05D006793 ORTHO05D003476 2.6e-44 184.1 512 31.1
RcHm_v2.0_Chr1g0336511 Rosa chinensis HOM05D006793 ORTHO05D003476 9.8e-44 182.2 523 32.1
Dinv20859 Davidia involucrata HOM05D006793 ORTHO05D003476 2.2e-43 181.0 149 63.1
Cc02_g10490 Coffea canephora HOM05D006793 ORTHO05D003476 2.8e-43 180.6 230 49.6
CsaV3_2G032770 Cucumis sativus L. HOM05D006793 ORTHO05D003476 5.4e-42 176.4 539 29.5
arahy.Tifrunner.gnm1.ann1.U5ZVAW Arachis hypogaea HOM05D006793 ORTHO05D003476 7.0e-42 176.0 512 29.5
Eucgr.G02731 Eucalyptus grandis HOM05D006793 ORTHO05D003476 7.0e-42 176.0 517 32.5
THA.LOC104824314 Tarenaya hassleriana HOM05D006793 ORTHO05D003476 2.0e-41 174.5 559 30.9
PSO339G4934 Papaver somniferum HOM05D006793 ORTHO05D003476 2.7e-41 174.1 153 57.5
SGA_v2.0_scaffold62G21362 Striga asiatica HOM05D006793 ORTHO05D003476 3.5e-41 173.7 302 41.4
MELO3C019853.2 Cucumis melo HOM05D006793 ORTHO05D003476 7.8e-41 172.6 503 30.4
MSTRG.27506 Avicennia marina HOM05D006793 ORTHO05D003476 2.3e-40 171.0 521 30.9
Lalb_Chr02g0151171 Lupinus albus HOM05D006793 ORTHO05D003476 3.9e-40 170.2 538 29.6
Glyma.10G199900 Glycine max HOM05D006793 ORTHO05D003476 8.6e-40 169.1 564 29.6
Glyma.20G190600 Glycine max HOM05D006793 ORTHO05D003476 8.6e-40 169.1 540 30.7
Lalb_Chr21g0313091 Lupinus albus HOM05D006793 ORTHO05D003476 1.1e-39 168.7 529 30.1
VMungo0720G1705 Vigna mungo HOM05D006793 ORTHO05D003476 1.9e-39 167.9 545 30.5
MSTRG.404 Avicennia marina HOM05D006793 ORTHO05D003476 1.6e-38 164.9 541 29.9
Haze_16786 Corylus avellana HOM05D006793 ORTHO05D003476 1.0e-37 162.2 499 31.3
DCAR_019058 Daucus carota HOM05D006793 ORTHO05D003476 1.4e-37 161.8 517 32.1
Oeu060293.1 Olea europaea HOM05D006793 ORTHO05D003476 1.4e-37 161.8 555 32.3
MD07G1075000 Malus domestica HOM05D006793 ORTHO05D003476 2.3e-37 161.0 487 31.8
TWI38G2135 Tripterygium wilfordii HOM05D006793 ORTHO05D003476 5.2e-37 159.8 121 64.5
Lj5g0011528 Lotus japonicus HOM05D006793 ORTHO05D003476 8.9e-37 159.1 532 29.3
Cpa.g.sc128.73 Carica papaya HOM05D006793 ORTHO05D003476 3.4e-36 157.1 194 48.5
AT3G52170 Arabidopsis thaliana HOM05D006793 ORTHO05D003476 4.4e-36 156.8 530 29.8
Carub.0005s1853 Capsella rubella HOM05D006793 ORTHO05D003476 5.8e-36 156.4 522 31.0
TPR.G37771 Trifolium pratense HOM05D006793 ORTHO05D003476 4.9e-35 153.3 179 51.4
Medtr1g090853 Medicago truncatula HOM05D006793 ORTHO05D003476 5.4e-34 149.8 114 65.8
Sp5g10100 Schrenkiella parvula HOM05D006793 ORTHO05D003476 7.0e-34 149.4 531 29.6
ClCG08G007950 Citrullus lanatus HOM05D006793 ORTHO05D003476 4.6e-33 146.7 349 33.0
A04p07200 Brassica napus HOM05D006793 ORTHO05D003476 6.0e-33 146.4 522 29.3
Aa31LG10G7260 Aethionema arabicum HOM05D000145 ORTHO05D003476 1.0e-32 145.6 519 28.7
CARHR161930 Cardamine hirsuta HOM05D006793 ORTHO05D003476 1.0e-32 145.6 515 28.5
Thhalv10010306m.g Eutrema salsugineum HOM05D006793 ORTHO05D003476 1.0e-32 145.6 527 29.2
BraA03t13975Z Brassica rapa HOM05D006793 ORTHO05D003476 1.7e-32 144.8 517 30.4
MBI17_g07069_MAGBIO Magnolia biondii HOM05D006793 ORTHO05D003476 2.3e-32 144.4 538 29.4
A03p48750 Brassica napus HOM05D006793 ORTHO05D003476 3.0e-32 144.1 517 31.3
AL5G32750 Arabidopsis lyrata HOM05D006793 ORTHO05D003476 3.9e-32 143.7 527 28.3
Psat6g174040 Pisum sativum HOM05D006793 ORTHO05D003476 6.6e-32 142.9 155 51.0
ECA233G3433 Erigeron canadensis HOM05D006793 ORTHO05D003476 1.1e-31 142.1 504 30.0
Lsat_1_v5_gn_8_22741 Lactuca sativa HOM05D006793 ORTHO05D003476 2.5e-31 141.0 311 35.7
BraA04t16415Z Brassica rapa HOM05D000992 ORTHO05D006704 4.3e-31 140.2 517 28.4
BcaC02g09274 Brassica carinata HOM05D006793 ORTHO05D003476 1.2e-30 138.7 503 30.8
FAN03G3430 Fragaria x ananassa HOM05D006793 ORTHO05D003476 6.2e-30 136.3 483 28.6
Lsat_1_v5_gn_2_103100 Lactuca sativa HOM05D006793 ORTHO05D003476 1.8e-29 134.8 303 37.0
C04p40750 Brassica napus HOM05D000992 ORTHO05D006704 2.3e-29 134.4 517 30.6
BolC4t25659H Brassica oleracea HOM05D000992 ORTHO05D006704 2.3e-29 134.4 517 30.6
CDE03G0520 Ceratophyllum demersum HOM05D048142 ORTHO05D003476 4.1e-26 123.6 532 26.5
ECA238G3554 Erigeron canadensis HOM05D006793 ORTHO05D003476 2.3e-24 117.9 195 40.0
HPP92_027826 Vanilla planifolia HOM05D006793 ORTHO05D003476 3.0e-24 117.5 539 25.8
ATR1126G067 Amborella trichopoda HOM05D006793 ORTHO05D003476 4.3e-23 113.6 90 58.9
Sed0009649 Sechium edule HOM05D006793 ORTHO05D003476 2.8e-22 110.9 505 27.5
vmacro07208 Vaccinium macrocarpon HOM05D000992 ORTHO05D006704 8.9e-21 105.9 320 31.2
Os12g0528000 Oryza sativa ssp. japonica HOM05D006793 ORTHO05D003476 7.6e-20 102.8 68 69.1
Ca_10462_v3 Cicer arietinum L. HOM05D001977 ORTHO05D002246 1.3e-19 102.1 261 33.3
Zm00001eb410830 Zea mays HOM05D006793 ORTHO05D003476 1.3e-19 102.1 78 64.1
Zm00001eb137780 Zea mays HOM05D006793 ORTHO05D003476 1.7e-19 101.7 62 75.8
HanXRQChr14g0456191 Helianthus annuus HOM05D006793 ORTHO05D003476 5.4e-18 96.7 139 44.6
HanXRQChr12g0368421 Helianthus annuus HOM05D006793 ORTHO05D003476 9.2e-18 95.9 210 38.1
MD02G1237300 Malus domestica HOM05D006793 ORTHO05D003476 7.8e-17 92.8 507 26.4
unitig_899.g14485 Utricularia gibba HOM05D006793 ORTHO05D003476 5.1e-16 90.1 282 30.9
CSS0025253 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D000001 4.3e-15 87.0 84 50.0
SEGI_29881 Sequoiadendron giganteum HOM05D006793 ORTHO05D003476 7.3e-15 86.3 83 51.8
CSS0050149 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D003476 8.9e-13 79.3 324 28.7
TPR.G31356 Trifolium pratense HOM05D008057 ORTHO05D003476 4.9e-11 73.6 249 27.7
CDE04G2158 Ceratophyllum demersum HOM05D008057 ORTHO05D003476 8.4e-11 72.8 84 44.0
MBI03_g11904_MAGBIO Magnolia biondii HOM05D008057 ORTHO05D003476 8.4e-11 72.8 75 44.0
MSTRG.22259 Avicennia marina HOM05D008057 ORTHO05D003476 1.1e-10 72.4 79 41.8
CsaV3_1G033920 Cucumis sativus L. HOM05D008057 ORTHO05D003476 1.4e-10 72.0 76 46.1
ClCG03G001720 Citrullus lanatus HOM05D008057 ORTHO05D003476 4.2e-10 70.5 76 43.4
Cc00_g01550 Coffea canephora HOM05D008057 ORTHO05D003476 9.3e-10 69.3 76 43.4
Medtr6g069010 Medicago truncatula HOM05D008057 ORTHO05D003476 9.3e-10 69.3 90 40.0
Nitab4.5_0009307g0060 Nicotiana tabacum HOM05D008057 ORTHO05D003476 9.3e-10 69.3 77 42.9
Peaxi162Scf00171g00028 Petunia axillaris HOM05D008057 ORTHO05D003476 9.3e-10 69.3 137 30.7
MELO3C020667.2 Cucumis melo HOM05D008057 ORTHO05D003476 1.2e-09 68.9 76 44.7
Hma1.2p1_0016F.1_g010880 Hydrangea macrophylla HOM05D008057 ORTHO05D003476 1.2e-09 68.9 78 37.2
Duzib068G0937 Durio zibethinus HOM05D008057 ORTHO05D003476 1.6e-09 68.6 77 41.6
Cpa.g.sc124.3 Carica papaya HOM05D008057 ORTHO05D003476 2.1e-09 68.2 77 39.0
CiPaw.16G075800 Carya illinoinensis HOM05D008057 ORTHO05D003476 3.5e-09 67.4 82 37.8
Cfa017812 Carpinus fangiana HOM05D008057 ORTHO05D003476 7.8e-09 66.2 79 36.7
Nn3g18533 Nelumbo nucifera HOM05D008057 ORTHO05D003476 7.8e-09 66.2 72 41.7
Gohir.D02G118700 Gossypium hirsutum HOM05D008057 ORTHO05D003476 1.0e-08 65.9 75 42.7
Gohir.A03G090600 Gossypium hirsutum HOM05D008057 ORTHO05D003476 1.3e-08 65.5 75 41.3
Psat1g117960 Pisum sativum HOM05D008057 ORTHO05D003476 1.3e-08 65.5 86 40.7
Nitab4.5_0008182g0020 Nicotiana tabacum HOM05D008057 ORTHO05D003476 1.7e-08 65.1 71 43.7
Gorai.005G135100 Gossypium raimondii HOM05D008057 ORTHO05D003476 3.0e-08 64.3 75 41.3
THA.LOC104805620 Tarenaya hassleriana HOM05D012436 ORTHO05D003476 3.0e-08 64.3 76 39.5
AT5G58210 Arabidopsis thaliana HOM05D012436 ORTHO05D003476 3.9e-08 63.9 50 52.0
TAR311G0002 Trochodendron aralioides HOM05D008057 ORTHO05D003476 3.9e-08 63.9 77 37.7
GSVIVG01024238001 Vitis vinifera HOM05D008057 ORTHO05D003476 5.1e-08 63.5 70 42.9
Atru.chr9.28 Acer truncatum HOM05D008057 ORTHO05D003476 6.6e-08 63.2 79 36.7
COL.COLO4_33681 Corchorus olitorius HOM05D002656 ORTHO05D003062 8.7e-08 62.8 56 50.0
Dinv22201 Davidia involucrata HOM05D008057 ORTHO05D003476 8.7e-08 62.8 76 39.5
SGA_v2.0_scaffold14G06996 Striga asiatica HOM05D008057 ORTHO05D003476 1.1e-07 62.4 106 31.1
Sed0004109 Sechium edule HOM05D008057 ORTHO05D003476 1.5e-07 62.0 80 37.5
Thhalv10014108m.g Eutrema salsugineum HOM05D012436 ORTHO05D003476 1.9e-07 61.6 50 52.0
ECA233G4523 Erigeron canadensis HOM05D008057 ORTHO05D003476 2.5e-07 61.2 116 27.6
Os02g0638000 Oryza sativa ssp. japonica HOM05D008057 ORTHO05D003476 2.5e-07 61.2 57 45.6
PGR044G1600 Punica granatum HOM05D008057 ORTHO05D003476 2.5e-07 61.2 71 38.0
AL8G34310 Arabidopsis lyrata HOM05D012436 ORTHO05D003476 3.3e-07 60.8 50 50.0
Carub.0008s1875 Capsella rubella HOM05D012436 ORTHO05D003476 3.3e-07 60.8 52 44.2
QL10p035701 Quercus lobata HOM05D008057 ORTHO05D003476 3.3e-07 60.8 58 44.8
Rhsim10G0138900 Rhododendron simsii HOM05D008057 ORTHO05D003476 3.3e-07 60.8 89 34.8
TAR629G2050 Trochodendron aralioides HOM05D008057 ORTHO05D003476 3.3e-07 60.8 78 35.9
CARHR272010 Cardamine hirsuta HOM05D012436 ORTHO05D003476 4.3e-07 60.5 52 46.2
Migut.N02713 Erythranthe guttata HOM05D008057 ORTHO05D003476 4.3e-07 60.5 78 39.7
Lj2g0026608 Lotus japonicus HOM05D008057 ORTHO05D003476 4.3e-07 60.5 339 21.8
BcaB01g04549 Brassica carinata HOM05D012436 ORTHO05D003476 5.6e-07 60.1 63 41.3
A03p12360 Brassica napus HOM05D012436 ORTHO05D003476 5.6e-07 60.1 50 46.0
C03p14510 Brassica napus HOM05D012436 ORTHO05D003476 5.6e-07 60.1 50 46.0
BolC3t13894H Brassica oleracea HOM05D012436 ORTHO05D003476 5.6e-07 60.1 63 41.3
Lalb_Chr14g0370111 Lupinus albus HOM05D008057 ORTHO05D003476 7.3e-07 59.7 60 40.0
Ciclev10020800m.g Citrus clementina HOM05D008057 ORTHO05D003476 9.6e-07 59.3 298 22.8
Dinv20860 Davidia involucrata HOM05D006793 ORTHO05D003476 9.6e-07 59.3 96 39.6
Glyma.16G210200 Glycine max HOM05D008057 ORTHO05D003476 1.3e-06 58.9 71 36.6
Glyma.09G160700 Glycine max HOM05D008057 ORTHO05D003476 1.6e-06 58.5 161 25.5
Potri.018G151900 Populus trichocarpa HOM05D008057 ORTHO05D003476 2.8e-06 57.8 194 22.7
CSS0004401 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D003476 3.6e-06 57.4 41 65.9
PGSC0003DMG401015209 Solanum tuberosum HOM05D008057 ORTHO05D003476 3.6e-06 57.4 69 40.6
BcaB01g04480 Brassica carinata HOM05D012436 ORTHO05D003476 4.8e-06 57.0 50 44.0
Sp6g19870 Schrenkiella parvula HOM05D012436 ORTHO05D003476 6.2e-06 56.6 260 24.2
Sed0002498 Sechium edule HOM05D008057 ORTHO05D003476 6.2e-06 56.6 74 37.8
DCAR_014755 Daucus carota HOM05D008057 ORTHO05D003476 8.1e-06 56.2 122 26.2
Eucgr.K02337 Eucalyptus grandis HOM05D008057 ORTHO05D003476 8.1e-06 56.2 81 33.3
SGA_v2.0_scaffold28G11776 Striga asiatica HOM05D008057 ORTHO05D003476 8.1e-06 56.2 79 39.2


User provided reference genes

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