Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 2.2e-266 921.8 487 100.0
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 5.0e-258 894.0 487 97.1
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 1.6e-208 729.6 489 79.8
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 2.5e-201 705.7 488 77.7
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 6.2e-200 701.0 471 80.5
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 2.5e-177 625.9 492 67.3
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 1.8e-170 603.2 490 65.3
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 3.9e-170 602.1 495 66.5
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 8.2e-168 594.3 489 65.6
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 4.1e-167 592.0 461 66.8
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 3.4e-166 589.0 489 64.6
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 3.4e-166 589.0 489 64.2
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 4.5e-166 588.6 489 64.6
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 1.7e-165 586.6 495 63.4
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 1.7e-165 586.6 489 64.0
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 5.0e-165 585.1 490 63.1
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 8.5e-165 584.3 492 63.8
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 1.1e-164 583.9 488 65.0
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 4.6e-163 578.6 489 63.0
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 7.9e-163 577.8 461 65.7
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.0e-162 577.4 505 61.2
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 2.5e-161 572.8 492 61.4
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 3.3e-161 572.4 490 62.4
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 4.8e-160 568.5 498 61.6
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 4.8e-160 568.5 489 62.6
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.8e-159 566.6 492 60.8
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 2.0e-158 563.1 489 62.0
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 2.6e-158 562.8 490 60.4
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 2.6e-158 562.8 489 60.3
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 1.0e-157 560.8 487 60.0
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 1.7e-157 560.1 490 59.8
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 5.0e-157 558.5 489 60.7
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 5.0e-157 558.5 501 61.9
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 1.9e-156 556.6 502 60.4
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 1.9e-156 556.6 501 61.7
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 1.0e-154 550.8 502 60.2
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 1.4e-154 550.4 493 61.1
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 1.8e-154 550.1 489 62.8
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 3.9e-154 548.9 491 59.9
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 2.6e-153 546.2 491 59.7
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 4.1e-151 538.9 494 59.5
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 1.5e-150 537.0 460 62.8
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 4.5e-150 535.4 489 61.1
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 5.9e-150 535.0 497 59.0
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 7.7e-150 534.6 511 58.9
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 1.0e-149 534.3 493 60.2
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 2.2e-149 533.1 418 66.3
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 2.2e-149 533.1 489 58.1
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 8.5e-149 531.2 492 59.6
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 1.1e-148 530.8 491 58.9
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 4.7e-147 525.4 493 57.2
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 5.7e-145 518.5 481 56.3
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 3.7e-144 515.8 489 58.3
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 4.8e-144 515.4 497 57.7
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 2.4e-143 513.1 446 61.7
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 3.1e-143 512.7 488 59.0
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 4.1e-143 512.3 488 56.6
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 4.1e-143 512.3 426 66.2
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 7.0e-143 511.5 489 58.1
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 7.0e-143 511.5 506 55.9
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 9.1e-143 511.1 491 56.8
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 1.6e-142 510.4 497 57.9
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.0e-142 510.0 489 55.6
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 3.5e-142 509.2 491 56.4
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 4.5e-142 508.8 488 57.0
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 7.7e-142 508.1 475 56.4
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 3.8e-141 505.8 488 55.3
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 6.5e-141 505.0 490 56.7
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 6.5e-141 505.0 544 53.9
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 3.2e-140 502.7 489 55.4
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 4.2e-140 502.3 489 55.4
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 5.5e-140 501.9 490 56.7
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 5.5e-140 501.9 520 53.1
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 5.5e-140 501.9 490 55.3
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 5.5e-140 501.9 408 65.2
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 7.2e-140 501.5 488 57.8
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.7e-139 499.6 512 53.1
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 3.0e-138 496.1 488 55.3
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 5.2e-138 495.4 488 55.9
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.2e-137 494.2 467 56.1
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 3.3e-137 492.7 507 56.2
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 5.7e-137 491.9 489 55.6
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 7.5e-137 491.5 489 53.8
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 9.7e-137 491.1 462 58.2
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 1.1e-135 487.6 497 56.1
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 2.4e-135 486.5 462 57.6
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 1.0e-133 481.1 510 54.1
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 1.3e-133 480.7 495 54.3
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 1.7e-133 480.3 488 56.1
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 6.5e-133 478.4 492 54.3
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 1.9e-132 476.9 490 53.5
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 1.2e-131 474.2 492 54.9
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 1.0e-130 471.1 488 53.1
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.0e-130 471.1 453 58.5
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 1.8e-130 470.3 451 56.8
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 5.2e-130 468.8 520 52.7
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 6.8e-130 468.4 493 54.2
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 1.2e-129 467.6 588 46.9
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 9.8e-129 464.5 489 52.4
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 1.1e-127 461.1 489 53.4
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 1.4e-127 460.7 489 53.4
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 1.8e-127 460.3 425 57.2
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 3.1e-127 459.5 489 53.6
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 9.1e-127 458.0 490 53.7
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 2.7e-126 456.4 488 52.5
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 1.0e-125 454.5 489 52.4
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 3.8e-125 452.6 491 52.5
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 3.8e-125 452.6 489 52.6
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 9.5e-124 448.0 490 52.7
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 1.2e-123 447.6 459 53.4
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 4.0e-122 442.6 448 54.9
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 2.0e-121 440.3 489 51.7
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 4.4e-121 439.1 489 52.6
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 7.5e-121 438.3 491 51.7
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 6.3e-120 435.3 497 52.1
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 1.1e-119 434.5 491 51.7
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 7.0e-119 431.8 404 55.2
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 7.8e-118 428.3 488 51.6
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 7.8e-118 428.3 488 50.6
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 1.7e-117 427.2 478 53.6
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 1.5e-116 424.1 488 51.6
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.9e-116 423.7 537 47.1
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.5e-116 423.3 537 47.1
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 3.3e-116 422.9 498 51.2
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 1.2e-115 421.0 489 50.7
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 4.0e-114 416.0 463 52.5
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 2.6e-113 413.3 388 55.4
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 1.6e-107 394.0 453 49.4
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 1.8e-106 390.6 488 48.2
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 9.8e-105 384.8 345 63.2
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.3e-104 384.4 451 52.1
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 3.0e-101 373.2 488 46.3
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 1.2e-99 367.9 392 54.3
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 1.5e-97 360.9 482 47.9
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.9e-95 354.0 495 47.9
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 1.1e-90 338.2 216 74.1
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 1.4e-90 337.8 409 48.4
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 2.0e-89 334.0 446 45.1
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 7.6e-89 332.0 412 48.5
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 2.2e-88 330.5 216 70.8
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 1.1e-87 328.2 449 41.0
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 7.1e-87 325.5 371 47.4
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 9.9e-81 305.1 359 45.7
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 3.8e-80 303.1 222 64.0
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 4.3e-76 289.7 291 48.5
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 4.3e-76 289.7 348 44.3
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 1.2e-62 245.0 180 65.0
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 1.4e-50 204.9 321 45.8
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 7.2e-47 192.6 156 60.9
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 1.9e-44 184.5 239 50.2
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 3.3e-44 183.7 135 60.7
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 3.4e-41 173.7 267 37.5
SHI09778 Sapria himalayana HOM05D004208 ORTHO05D005156 1.6e-38 164.9 272 43.4
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 1.5e-33 148.3 258 31.4
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 4.7e-30 136.7 190 35.8
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 8.0e-30 136.0 95 65.3
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 2.0e-25 121.3 230 40.4
Rhsim01G0263500 Rhododendron simsii HOM05D004208 ORTHO05D005156 3.8e-24 117.1 112 59.8
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 2.5e-23 114.4 76 68.4
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 1.4e-18 98.6 68 61.8
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 2.0e-17 94.7 117 51.3
CDE04G1040 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 3.8e-16 90.5 96 55.2
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 7.5e-12 76.3 56 57.1
HanXRQChr10g0299451 Helianthus annuus HOM05D004208 ORTHO05D219928 6.5e-08 63.2 42 61.9
MD09G1008600 Malus domestica HOM05D004208 ORTHO05D005156 8.6e-08 62.8 77 46.8
FvH4_4g16331 Fragaria vesca HOM05D004208 ORTHO05D197324 1.1e-07 62.4 72 48.6
FvH4_3g18772 Fragaria vesca HOM05D004208 ORTHO05D198159 2.8e-06 57.8 66 51.5
QL04p049599 Quercus lobata HOM05D000196 ORTHO05D000279 2.8e-06 57.8 45 60.0


User provided reference genes

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