Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62029918 Chenopodium quinoa HOM05D007058 ORTHO05D009036 1.1e-38 162.9 88 100.0
AUR62033787 Chenopodium quinoa HOM05D007058 ORTHO05D009036 1.6e-37 159.1 86 100.0
EL10Ac5g11484 Beta vulgaris HOM05D007058 ORTHO05D009036 3.8e-31 137.9 85 84.7
Ah.11g045170 Amaranthus hybridus HOM05D007058 ORTHO05D009036 2.5e-30 135.2 87 81.6
Sc12g0007400 Simmondsia chinensis HOM05D007058 ORTHO05D009036 6.9e-25 117.1 81 74.1
Hma1.2p1_1614F.1_g293670 Hydrangea macrophylla HOM05D007058 ORTHO05D009036 4.5e-24 114.4 80 72.5
Hma1.2p1_2594F.1_g325085 Hydrangea macrophylla HOM05D007058 ORTHO05D009036 4.5e-24 114.4 80 72.5
Hund02350 Selenicereus undatus HOM05D007058 ORTHO05D009036 7.6e-24 113.6 78 73.1
Oeu017513.1 Olea europaea HOM05D007058 ORTHO05D009036 1.3e-23 112.8 82 67.1
Dinv12229 Davidia involucrata HOM05D007058 ORTHO05D009036 3.8e-23 111.3 82 69.5
Peaxi162Scf00683g00337 Petunia axillaris HOM05D007058 ORTHO05D009036 3.2e-22 108.2 82 64.6
Potri.012G053600 Populus trichocarpa HOM05D007058 ORTHO05D009036 5.5e-22 107.5 79 67.1
Actinidia02670 Actinidia chinensis HOM05D007058 ORTHO05D009036 9.3e-22 106.7 82 65.9
Nitab4.5_0006894g0050 Nicotiana tabacum HOM05D007058 ORTHO05D009036 9.3e-22 106.7 82 64.6
GSVIVG01008345001 Vitis vinifera HOM05D007058 ORTHO05D009036 9.3e-22 106.7 81 66.7
Nitab4.5_0001456g0070 Nicotiana tabacum HOM05D007058 ORTHO05D009036 1.6e-21 105.9 82 64.6
Atru.chr9.916 Acer truncatum HOM05D007058 ORTHO05D009036 2.1e-21 105.5 79 67.1
Duzib205G0828 Durio zibethinus HOM05D007058 ORTHO05D009036 2.1e-21 105.5 83 63.9
PGR044G0638 Punica granatum HOM05D007058 ORTHO05D009036 2.1e-21 105.5 78 67.9
Lj9A424T33 Lonicera japonica HOM05D007058 ORTHO05D009036 3.5e-21 104.8 78 65.4
Cc04_g06820 Coffea canephora HOM05D007058 ORTHO05D009036 4.6e-21 104.4 78 66.7
COL.COLO4_38517 Corchorus olitorius HOM05D007058 ORTHO05D009036 6.1e-21 104.0 81 65.4
Migut.I00419 Erythranthe guttata HOM05D007058 ORTHO05D009036 6.1e-21 104.0 77 67.5
CANSAT80G0903 Cannabis sativa HOM05D007058 ORTHO05D009036 1.0e-20 103.2 84 59.5
Ciclev10020201m.g Citrus clementina HOM05D007058 ORTHO05D009036 1.0e-20 103.2 79 67.1
Sabra12G0037400 Salix brachista HOM05D007058 ORTHO05D009036 1.0e-20 103.2 79 64.6
PGSC0003DMG400005667 Solanum tuberosum HOM05D007058 ORTHO05D009036 1.0e-20 103.2 78 65.4
MD06G1220900 Malus domestica HOM05D007058 ORTHO05D009036 2.3e-20 102.1 82 63.4
QL10p026796 Quercus lobata HOM05D007058 ORTHO05D009036 3.0e-20 101.7 83 62.7
Solyc03g118860.3 Solanum lycopersicum HOM05D007058 ORTHO05D009036 3.0e-20 101.7 78 64.1
Sopen03g037810 Solanum pennellii HOM05D007058 ORTHO05D009036 3.0e-20 101.7 78 64.1
Thecc.03G043100 Theobroma cacao HOM05D007058 ORTHO05D009036 5.1e-20 100.9 83 62.7
Eucgr.K02237 Eucalyptus grandis HOM05D007058 ORTHO05D009036 6.7e-20 100.5 78 64.1
Gohir.A07G059500 Gossypium hirsutum HOM05D007058 ORTHO05D009036 1.1e-19 99.8 79 63.3
FAN08G1503 Fragaria x ananassa HOM05D007058 ORTHO05D009036 1.5e-19 99.4 81 63.0
FAN18G2897 Fragaria x ananassa HOM05D007058 ORTHO05D009036 1.5e-19 99.4 81 64.2
TAR629G3445 Trochodendron aralioides HOM05D007058 ORTHO05D009036 1.5e-19 99.4 82 58.5
TAR535G0005 Trochodendron aralioides HOM05D007058 ORTHO05D009036 1.9e-19 99.0 82 58.5
ATR0681G321 Amborella trichopoda HOM05D007058 ORTHO05D009036 3.3e-19 98.2 82 58.5
FAN04G2101 Fragaria x ananassa HOM05D007058 ORTHO05D009036 3.3e-19 98.2 81 64.2
FAN13G1457 Fragaria x ananassa HOM05D007058 ORTHO05D009036 3.3e-19 98.2 81 63.0
Cpa.g.sc3.458 Carica papaya HOM05D007058 ORTHO05D009036 4.3e-19 97.8 83 59.0
MD14G1230300 Malus domestica HOM05D007058 ORTHO05D009036 4.3e-19 97.8 82 59.8
Gorai.001G067800 Gossypium raimondii HOM05D007058 ORTHO05D009036 7.4e-19 97.1 79 63.3
MBI16_g25105_MAGBIO Magnolia biondii HOM05D007058 ORTHO05D009036 7.4e-19 97.1 82 58.5
Manes.01G015400 Manihot esculenta HOM05D007058 ORTHO05D009036 9.7e-19 96.7 82 62.2
RcHm_v2.0_Chr7g0179381 Rosa chinensis HOM05D007058 ORTHO05D009036 9.7e-19 96.7 81 61.7
Nn3g17960 Nelumbo nucifera HOM05D007058 ORTHO05D009036 1.3e-18 96.3 81 59.3
Prupe.5G225300 Prunus persica HOM05D007058 ORTHO05D009036 1.6e-18 95.9 82 58.5
CAN.G1129.46 Capsicum annuum HOM05D007058 ORTHO05D009036 2.8e-18 95.1 78 62.8
CsaV3_1G006960 Cucumis sativus L. HOM05D007058 ORTHO05D009036 6.3e-18 94.0 85 52.9
MELO3C002112.2 Cucumis melo HOM05D007058 ORTHO05D009036 1.4e-17 92.8 85 52.9
TWI60G0394 Tripterygium wilfordii HOM05D007058 ORTHO05D009036 1.8e-17 92.4 80 58.8
Aqoxy3G04055 Aquilegia oxysepala HOM05D007058 ORTHO05D009036 5.3e-17 90.9 82 57.3
TAR371G0970 Trochodendron aralioides HOM05D007058 ORTHO05D009036 9.0e-17 90.1 82 51.2
Aa31LG4G4070 Aethionema arabicum HOM05D007058 ORTHO05D009036 1.2e-16 89.7 84 51.2
Thhalv10018574m.g Eutrema salsugineum HOM05D007058 ORTHO05D009036 1.2e-16 89.7 78 53.8
CARHR066810 Cardamine hirsuta HOM05D007058 ORTHO05D009036 2.0e-16 89.0 79 53.2
arahy.Tifrunner.gnm1.ann1.8NC01M Arachis hypogaea HOM05D007058 ORTHO05D009036 2.6e-16 88.6 78 60.3
arahy.Tifrunner.gnm1.ann1.LC4GJT Arachis hypogaea HOM05D007058 ORTHO05D009036 2.6e-16 88.6 78 60.3
Sed0017039 Sechium edule HOM05D007058 ORTHO05D009036 3.4e-16 88.2 80 57.5
AL2G33550 Arabidopsis lyrata HOM05D007058 ORTHO05D009036 4.5e-16 87.8 79 50.6
VMungo0251G0619 Vigna mungo HOM05D007058 ORTHO05D009036 5.9e-16 87.4 78 60.3
Sp5g28930 Schrenkiella parvula HOM05D007058 ORTHO05D009036 1.0e-15 86.7 79 50.6
THA.LOC104813907 Tarenaya hassleriana HOM05D007058 ORTHO05D009036 1.0e-15 86.7 79 50.6
Carub.0002s2049 Capsella rubella HOM05D007058 ORTHO05D009036 2.2e-15 85.5 78 51.3
ClCG04G010870 Citrullus lanatus HOM05D007058 ORTHO05D009036 2.2e-15 85.5 85 50.6
AT1G73740 Arabidopsis thaliana HOM05D007058 ORTHO05D009036 3.8e-15 84.7 79 49.4
BcaB03g15080 Brassica carinata HOM05D007058 ORTHO05D009036 5.0e-15 84.3 79 50.6
A07p39600 Brassica napus HOM05D007058 ORTHO05D009036 5.0e-15 84.3 79 50.6
C06p47890 Brassica napus HOM05D007058 ORTHO05D009036 5.0e-15 84.3 79 50.6
BolC6t39824H Brassica oleracea HOM05D007058 ORTHO05D009036 5.0e-15 84.3 79 50.6
BraA07t31509Z Brassica rapa HOM05D007058 ORTHO05D009036 5.0e-15 84.3 79 50.6
HPP92_023400 Vanilla planifolia HOM05D007058 ORTHO05D009036 8.5e-15 83.6 80 52.5
PSO063G1254 Papaver somniferum HOM05D007058 ORTHO05D009036 1.4e-14 82.8 78 52.6
PSO782G5502 Papaver somniferum HOM05D007058 ORTHO05D009036 1.4e-14 82.8 78 52.6
Lj4g0007182 Lotus japonicus HOM05D007058 ORTHO05D009036 1.2e-13 79.7 78 55.1
HPP92_027335 Vanilla planifolia HOM05D007058 ORTHO05D009036 1.6e-13 79.3 79 50.6
HPP92_017197 Vanilla planifolia HOM05D007058 ORTHO05D009036 3.6e-13 78.2 79 50.6
Haze_18744 Corylus avellana HOM05D007058 ORTHO05D009036 6.7e-12 73.9 45 80.0
Gohir.D07G064250 Gossypium hirsutum HOM05D007058 ORTHO05D009036 2.0e-11 72.4 62 61.3
Rhsim08G0129900 Rhododendron simsii HOM05D007058 ORTHO05D009036 5.7e-11 70.9 46 73.9
Phvul.002G325300 Phaseolus vulgaris HOM05D007058 ORTHO05D009036 1.5e-08 62.8 45 68.9
CAN.G169.6 Capsicum annuum HOM05D007058 ORTHO05D009036 2.6e-08 62.0 70 44.3
Mapoly0014s0012 Marchantia polymorpha HOM05D007058 ORTHO05D009036 2.6e-08 62.0 77 40.3
Glyma.08G049450 Glycine max HOM05D007058 ORTHO05D009036 4.5e-08 61.2 44 68.2
SEGI_28231 Sequoiadendron giganteum HOM05D007058 ORTHO05D009036 4.2e-06 54.7 45 57.8


User provided reference genes

Program Settings