Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62029914 Chenopodium quinoa HOM05D003094 ORTHO05D003482 8.4e-235 816.6 405 100.0
AUR62033800 Chenopodium quinoa HOM05D003094 ORTHO05D003482 7.8e-39 165.6 148 69.6
EL10Ac5g11481 Beta vulgaris HOM05D003094 ORTHO05D003482 1.6e-20 104.8 66 77.3
Hund02353 Selenicereus undatus HOM05D003094 ORTHO05D003482 1.3e-14 85.1 73 60.3
Sc10g0009380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 3.9e-14 83.6 66 65.2
Atru.chr9.906 Acer truncatum HOM05D003094 ORTHO05D003482 3.3e-13 80.5 61 60.7
Ah.11g047710 Amaranthus hybridus HOM05D003094 ORTHO05D003482 4.3e-13 80.1 66 56.1
AUR62029276 Chenopodium quinoa HOM05D000003 ORTHO05D000126 5.6e-13 79.7 67 61.2
AUR62029277 Chenopodium quinoa HOM05D000003 ORTHO05D000126 5.6e-13 79.7 67 61.2
Phvul.002G182800 Phaseolus vulgaris HOM05D003094 ORTHO05D003482 2.8e-12 77.4 68 61.8
Rhsim12G0141600 Rhododendron simsii HOM05D003094 ORTHO05D003482 1.8e-11 74.7 62 61.3
Cfa019732 Carpinus fangiana HOM05D003094 ORTHO05D003482 2.4e-11 74.3 68 58.8
Psat7g083520 Pisum sativum HOM05D003094 ORTHO05D003482 2.4e-11 74.3 68 60.3
VMungo0251G1973 Vigna mungo HOM05D003094 ORTHO05D003482 2.4e-11 74.3 68 60.3
Gohir.D07G064100 Gossypium hirsutum HOM05D003094 ORTHO05D003482 4.0e-11 73.6 67 55.2
vmacro16434 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 5.3e-11 73.2 62 58.1
Sc04g0003380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 6.9e-11 72.8 68 60.3
Gohir.A07G059300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 9.0e-11 72.4 67 53.7
Gorai.001G067600 Gossypium raimondii HOM05D003094 ORTHO05D003482 9.0e-11 72.4 67 53.7
CiPaw.16G089100 Carya illinoinensis HOM05D003094 ORTHO05D003482 1.2e-10 72.0 68 57.4
Haze_18734 Corylus avellana HOM05D003094 ORTHO05D003482 1.2e-10 72.0 68 57.4
Atru.chr9.905 Acer truncatum HOM05D003094 ORTHO05D003482 2.6e-10 70.9 68 57.4
Actinidia35101 Actinidia chinensis HOM05D003094 ORTHO05D003482 2.6e-10 70.9 62 56.5
CSS0029576 Camellia sinensis var. sinensis HOM05D003094 ORTHO05D003482 2.6e-10 70.9 68 57.4
ClCG06G014600 Citrullus lanatus HOM05D003094 ORTHO05D003482 2.6e-10 70.9 68 58.8
Gohir.A02G112001 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.6e-10 70.9 67 52.2
Ca_11586_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 3.4e-10 70.5 68 57.4
Gorai.012G098500 Gossypium raimondii HOM05D000575 ORTHO05D003482 3.4e-10 70.5 67 52.2
Manes.05G133000 Manihot esculenta HOM05D003094 ORTHO05D003482 3.4e-10 70.5 68 58.8
GSVIVG01008338001 Vitis vinifera HOM05D003094 ORTHO05D003482 3.4e-10 70.5 68 55.9
Potri.015G044100 Populus trichocarpa HOM05D003094 ORTHO05D003482 4.5e-10 70.1 68 55.9
Hund11930 Selenicereus undatus HOM05D003094 ORTHO05D003482 4.5e-10 70.1 79 53.2
AUR62020327 Chenopodium quinoa HOM05D000003 ORTHO05D000126 7.6e-10 69.3 79 48.1
Ciclev10020325m.g Citrus clementina HOM05D003094 ORTHO05D003482 7.6e-10 69.3 68 57.4
Ciclev10023622m.g Citrus clementina HOM05D003094 ORTHO05D003482 7.6e-10 69.3 66 53.0
HanXRQChr17g0558961 Helianthus annuus HOM05D003094 ORTHO05D003482 9.9e-10 68.9 54 57.4
AUR62044315 Chenopodium quinoa HOM05D000003 ORTHO05D000126 1.3e-09 68.6 58 55.2
Glyma.05G139400 Glycine max HOM05D003094 ORTHO05D003482 1.3e-09 68.6 68 55.9
vmacro07219 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 1.3e-09 68.6 68 55.9
MELO3C017325.2 Cucumis melo HOM05D003094 ORTHO05D003482 2.2e-09 67.8 68 54.4
Dinv07353 Davidia involucrata HOM05D003094 ORTHO05D003482 2.2e-09 67.8 62 56.5
Dinv09627 Davidia involucrata HOM05D003094 ORTHO05D003482 2.2e-09 67.8 62 56.5
Lsat_1_v5_gn_8_141460 Lactuca sativa HOM05D003094 ORTHO05D003482 2.2e-09 67.8 45 64.4
Lj9A424T34 Lonicera japonica HOM05D003094 ORTHO05D003482 2.2e-09 67.8 68 55.9
Lj4g0013095 Lotus japonicus HOM05D003094 ORTHO05D003482 2.2e-09 67.8 45 71.1
MBI16_g44830_MAGBIO Magnolia biondii HOM05D003094 ORTHO05D003482 2.2e-09 67.8 68 54.4
QL10p026547 Quercus lobata HOM05D003094 ORTHO05D003482 2.2e-09 67.8 68 52.9
ECA233G5083 Erigeron canadensis HOM05D003094 ORTHO05D003482 2.9e-09 67.4 65 53.8
MD06G1220500 Malus domestica HOM05D003094 ORTHO05D003482 2.9e-09 67.4 68 51.5
SHI53281 Sapria himalayana HOM05D003094 ORTHO05D003482 2.9e-09 67.4 101 39.6
TPR.G35824 Trifolium pratense HOM05D003094 ORTHO05D003482 2.9e-09 67.4 45 68.9
TWI81G0976 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 2.9e-09 67.4 65 49.2
Gohir.D10G153150 Gossypium hirsutum HOM05D003094 ORTHO05D003482 3.8e-09 67.0 65 52.3
Actinidia19943 Actinidia chinensis HOM05D003094 ORTHO05D003482 4.9e-09 66.6 69 56.5
Actinidia36579 Actinidia chinensis HOM05D003094 ORTHO05D003482 4.9e-09 66.6 69 56.5
Dinv17506 Davidia involucrata HOM05D003094 ORTHO05D003482 4.9e-09 66.6 62 54.8
Glyma.08G094700 Glycine max HOM05D003094 ORTHO05D003482 4.9e-09 66.6 68 54.4
EL10Ac4g10181 Beta vulgaris HOM05D003094 ORTHO05D003482 6.4e-09 66.2 60 55.0
Duzib084G0458 Durio zibethinus HOM05D003094 ORTHO05D003482 6.4e-09 66.2 67 50.7
Sed0020442 Sechium edule HOM05D003094 ORTHO05D003482 6.4e-09 66.2 68 51.5
Duzib213G0897 Durio zibethinus HOM05D003094 ORTHO05D003482 8.4e-09 65.9 68 54.4
CsaV3_1G004020 Cucumis sativus L. HOM05D003094 ORTHO05D003482 1.1e-08 65.5 68 54.4
MD14G1229900 Malus domestica HOM05D003094 ORTHO05D003482 1.1e-08 65.5 68 50.0
Cpa.g.sc51.5 Carica papaya HOM05D003094 ORTHO05D003482 1.4e-08 65.1 71 52.1
COL.COLO4_38537 Corchorus olitorius HOM05D003094 ORTHO05D003482 1.4e-08 65.1 61 52.5
ATR0757G079 Amborella trichopoda HOM05D003094 ORTHO05D003482 1.9e-08 64.7 68 50.0
arahy.Tifrunner.gnm1.ann1.D1K70W Arachis hypogaea HOM05D003094 ORTHO05D003482 1.9e-08 64.7 68 52.9
CANSAT80G1577 Cannabis sativa HOM05D003094 ORTHO05D003482 1.9e-08 64.7 60 55.0
Gohir.A13G146900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.9e-08 64.7 62 51.6
Gorai.013G170500 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.9e-08 64.7 62 51.6
Sed0019035 Sechium edule HOM05D003094 ORTHO05D003482 1.9e-08 64.7 68 51.5
arahy.Tifrunner.gnm1.ann1.2IG2A1 Arachis hypogaea HOM05D003094 ORTHO05D003482 2.4e-08 64.3 68 52.9
Eucgr.K02236 Eucalyptus grandis HOM05D003094 ORTHO05D003482 2.4e-08 64.3 68 54.4
Gohir.A13G146300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.4e-08 64.3 62 51.6
Gohir.D13G151300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.4e-08 64.3 62 51.6
Gohir.D13G152004 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.4e-08 64.3 62 51.6
HanXRQChr06g0180771 Helianthus annuus HOM05D003094 ORTHO05D003482 2.4e-08 64.3 45 60.0
Prupe.5G225000 Prunus persica HOM05D003094 ORTHO05D003482 3.2e-08 63.9 66 53.0
Thecc.07G091700 Theobroma cacao HOM05D003094 ORTHO05D003482 3.2e-08 63.9 68 50.0
EL10Ac7g16627 Beta vulgaris HOM05D003094 ORTHO05D003482 4.2e-08 63.5 60 55.0
QL10p026559 Quercus lobata HOM05D003094 ORTHO05D003482 4.2e-08 63.5 51 56.9
Rhsim10G0183200 Rhododendron simsii HOM05D003094 ORTHO05D003482 4.2e-08 63.5 69 53.6
Sabra15G0041200 Salix brachista HOM05D003094 ORTHO05D003482 4.2e-08 63.5 68 54.4
Dinv12225 Davidia involucrata HOM05D003094 ORTHO05D003482 5.4e-08 63.2 68 51.5
FvH4_5g16690 Fragaria vesca HOM05D003094 ORTHO05D003482 5.4e-08 63.2 49 61.2
FAN18G0043 Fragaria x ananassa HOM05D003094 ORTHO05D003482 5.4e-08 63.2 49 61.2
Gohir.D09G047900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 5.4e-08 63.2 65 49.2
Manes.01G015200 Manihot esculenta HOM05D003094 ORTHO05D003482 5.4e-08 63.2 60 56.7
Gorai.001G159100 Gossypium raimondii HOM05D003094 ORTHO05D003482 7.1e-08 62.8 62 50.0
AUR62042498 Chenopodium quinoa HOM05D003094 ORTHO05D003482 9.3e-08 62.4 45 60.0
MELO3C002109.2 Cucumis melo HOM05D003094 ORTHO05D003482 9.3e-08 62.4 61 54.1
CsaV3_1G006930 Cucumis sativus L. HOM05D003094 ORTHO05D003482 9.3e-08 62.4 82 56.1
Gorai.003G056600 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.2e-07 62.0 62 51.6
ClCG04G010900 Citrullus lanatus HOM05D003094 ORTHO05D003482 1.6e-07 61.6 67 47.8
FAN13G1164 Fragaria x ananassa HOM05D003094 ORTHO05D003482 1.6e-07 61.6 49 59.2
Gorai.002G151500 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.6e-07 61.6 43 65.1
Gorai.013G169300 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.6e-07 61.6 61 52.5
CiPaw.16G089200 Carya illinoinensis HOM05D003094 ORTHO05D003482 2.1e-07 61.2 65 46.2
Nitab4.5_0001986g0080 Nicotiana tabacum HOM05D003094 ORTHO05D003482 2.1e-07 61.2 60 48.3
Solyc03g119170.3 Solanum lycopersicum HOM05D003094 ORTHO05D003482 2.1e-07 61.2 61 55.7
Sopen03g038060 Solanum pennellii HOM05D003094 ORTHO05D003482 2.1e-07 61.2 61 55.7
PGSC0003DMG402005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 2.1e-07 61.2 61 55.7
AUR62040348 Chenopodium quinoa HOM05D003094 ORTHO05D003482 2.7e-07 60.8 45 57.8
TAR374G0309 Trochodendron aralioides HOM05D003094 ORTHO05D003482 2.7e-07 60.8 69 52.2
TAR374G0733 Trochodendron aralioides HOM05D003094 ORTHO05D003482 2.7e-07 60.8 69 52.2
COL.COLO4_27184 Corchorus olitorius HOM05D003094 ORTHO05D003482 6.0e-07 59.7 52 50.0
MD06G1220600 Malus domestica HOM05D003094 ORTHO05D003482 7.9e-07 59.3 61 54.1
PSO017G6706 Papaver somniferum HOM05D003094 ORTHO05D003482 7.9e-07 59.3 71 43.7
PSO063G0897 Papaver somniferum HOM05D003094 ORTHO05D003482 7.9e-07 59.3 71 43.7
Peaxi162Scf00683g00019 Petunia axillaris HOM05D003094 ORTHO05D003482 7.9e-07 59.3 58 48.3
FAN08G1507 Fragaria x ananassa HOM05D003094 ORTHO05D003482 1.0e-06 58.9 66 48.5
Gohir.D05G318800 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.0e-06 58.9 62 48.4
RcHm_v2.0_Chr2g0128201 Rosa chinensis HOM05D003094 ORTHO05D003482 1.0e-06 58.9 69 47.8
Haze_18735 Corylus avellana HOM05D003094 ORTHO05D003482 1.3e-06 58.5 68 44.1
Thhalv10019822m.g Eutrema salsugineum HOM05D003094 ORTHO05D003482 1.3e-06 58.5 67 47.8
Gohir.D08G096900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.3e-06 58.5 62 48.4
Peaxi162Scf00683g00159 Petunia axillaris HOM05D003094 ORTHO05D003482 1.3e-06 58.5 69 53.6
FvH4_6g26830 Fragaria vesca HOM05D003094 ORTHO05D003482 1.8e-06 58.2 69 47.8
FAN14G2495 Fragaria x ananassa HOM05D003094 ORTHO05D003482 1.8e-06 58.2 69 47.8
RcHm_v2.0_Chr7g0179411 Rosa chinensis HOM05D003094 ORTHO05D003482 1.8e-06 58.2 66 47.0
AL2G33580 Arabidopsis lyrata HOM05D003094 ORTHO05D003482 2.3e-06 57.8 67 47.8
CAN.G1129.14 Capsicum annuum HOM05D003094 ORTHO05D003482 2.3e-06 57.8 60 46.7
TPR.G5116 Trifolium pratense HOM05D003094 ORTHO05D003482 2.3e-06 57.8 43 58.1
A02p18880 Brassica napus HOM05D003094 ORTHO05D003482 3.0e-06 57.4 70 45.7
BraA02t06932Z Brassica rapa HOM05D003094 ORTHO05D003482 3.0e-06 57.4 67 49.3
Cfa019731 Carpinus fangiana HOM05D003094 ORTHO05D003482 3.0e-06 57.4 65 44.6
Cc04_g06860 Coffea canephora HOM05D003094 ORTHO05D003482 3.0e-06 57.4 69 49.3
Nitab4.5_0001986g0070 Nicotiana tabacum HOM05D003094 ORTHO05D003482 3.0e-06 57.4 69 53.6
Nitab4.5_0004955g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 3.0e-06 57.4 69 53.6
C02p31410 Brassica napus HOM05D003094 ORTHO05D003482 3.9e-06 57.0 71 46.5
CAN.G1129.13 Capsicum annuum HOM05D003094 ORTHO05D003482 3.9e-06 57.0 71 49.3
Gohir.D07G182700 Gossypium hirsutum HOM05D003094 ORTHO05D003482 3.9e-06 57.0 62 45.2
PGR044G0078 Punica granatum HOM05D003094 ORTHO05D003482 3.9e-06 57.0 60 48.3
BcaC03g15460 Brassica carinata HOM05D003094 ORTHO05D003482 5.1e-06 56.6 67 49.3
BolC2t09174H Brassica oleracea HOM05D003094 ORTHO05D003482 5.1e-06 56.6 67 49.3
FAN02G1016 Fragaria x ananassa HOM05D003094 ORTHO05D003482 5.1e-06 56.6 69 46.4
HPP92_008848 Vanilla planifolia HOM05D003094 ORTHO05D003482 5.1e-06 56.6 68 47.1
HPP92_008864 Vanilla planifolia HOM05D003094 ORTHO05D003482 5.1e-06 56.6 68 47.1
BcaB05g24812 Brassica carinata HOM05D003094 ORTHO05D003482 6.7e-06 56.2 75 44.0
FAN05G2182 Fragaria x ananassa HOM05D003094 ORTHO05D003482 6.7e-06 56.2 69 46.4
Lsat_1_v5_gn_2_64400 Lactuca sativa HOM05D003094 ORTHO05D003482 6.7e-06 56.2 69 44.9
ECA238G4750 Erigeron canadensis HOM05D003094 ORTHO05D003482 8.7e-06 55.8 63 49.2
TWI60G1358 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 8.7e-06 55.8 69 49.3


User provided reference genes

Program Settings