Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62029845 Chenopodium quinoa HOM05D005116 ORTHO05D005937 1.0e-202 709.9 375 100.0
AUR62025873 Chenopodium quinoa HOM05D005116 ORTHO05D005937 2.6e-166 589.0 379 86.3
EL10Ac5g11143 Beta vulgaris HOM05D005116 ORTHO05D005937 4.6e-118 428.7 373 65.4
Ah.09g227990 Amaranthus hybridus HOM05D005116 ORTHO05D005937 8.4e-80 301.6 303 57.1
Sc09g0004750 Simmondsia chinensis HOM05D005116 ORTHO05D005937 2.3e-77 293.5 372 50.0
TAR627G0112 Trochodendron aralioides HOM05D005116 ORTHO05D005937 1.1e-76 291.2 406 48.0
MD09G1244900 Malus domestica HOM05D005116 ORTHO05D005937 4.3e-76 289.3 395 48.4
TAR629G1139 Trochodendron aralioides HOM05D005116 ORTHO05D005937 4.3e-76 289.3 407 48.6
CANSAT64G0665 Cannabis sativa HOM05D005116 ORTHO05D005937 2.1e-75 287.0 394 48.7
Eucgr.A01831 Eucalyptus grandis HOM05D005116 ORTHO05D005937 1.2e-73 281.2 397 46.1
Gorai.002G019600 Gossypium raimondii HOM05D005116 ORTHO05D005937 5.8e-73 278.9 393 49.1
Thecc.06G001400 Theobroma cacao HOM05D005116 ORTHO05D005937 7.6e-73 278.5 407 45.2
GSVIVG01020569001 Vitis vinifera HOM05D005116 ORTHO05D005937 7.6e-73 278.5 412 47.3
Gohir.D01G017400 Gossypium hirsutum HOM05D005116 ORTHO05D005937 1.3e-72 277.7 395 47.8
Sc09g0006700 Simmondsia chinensis HOM05D005116 ORTHO05D005937 7.1e-71 271.9 312 52.6
Gohir.A01G018800 Gossypium hirsutum HOM05D005116 ORTHO05D005937 1.2e-70 271.2 420 44.5
Lalb_Chr03g0029531 Lupinus albus HOM05D005116 ORTHO05D005937 3.0e-69 266.5 392 45.9
Manes.13G144900 Manihot esculenta HOM05D005116 ORTHO05D005937 3.9e-69 266.2 439 42.8
Duzib052G0489 Durio zibethinus HOM05D005116 ORTHO05D005937 6.7e-69 265.4 401 47.4
RcHm_v2.0_Chr7g0225641 Rosa chinensis HOM05D005116 ORTHO05D005937 1.1e-68 264.6 386 46.6
RcHm_v2.0_Chr4g0410421 Rosa chinensis HOM05D005116 ORTHO05D005937 2.5e-68 263.5 389 47.6
CiPaw.03G178700 Carya illinoinensis HOM05D005116 ORTHO05D005937 1.6e-67 260.8 432 43.3
Dinv13395 Davidia involucrata HOM05D005116 ORTHO05D005937 1.6e-67 260.8 428 42.8
PSO210G2339 Papaver somniferum HOM05D005116 ORTHO05D005937 2.2e-67 260.4 386 46.4
CSS0036411 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 2.8e-67 260.0 409 44.3
FvH4_5g30750 Fragaria vesca HOM05D005116 ORTHO05D005937 2.8e-67 260.0 382 45.8
PSO832G2322 Papaver somniferum HOM05D005116 ORTHO05D005937 4.8e-67 259.2 386 46.4
Glyma.12G116000 Glycine max HOM05D005116 ORTHO05D005937 6.3e-67 258.8 384 44.3
Hund01029 Selenicereus undatus HOM05D005116 ORTHO05D005937 1.1e-66 258.1 608 35.7
COL.COLO4_05946 Corchorus olitorius HOM05D005116 ORTHO05D005937 1.8e-66 257.3 403 46.7
Sopen07g027830 Solanum pennellii HOM05D005116 ORTHO05D005937 2.4e-66 256.9 387 48.1
arahy.Tifrunner.gnm1.ann1.KES1NF Arachis hypogaea HOM05D005116 ORTHO05D005937 5.3e-66 255.8 390 45.1
PGR042G3305 Punica granatum HOM05D005116 ORTHO05D005937 6.9e-66 255.4 383 46.0
Cpa.g.sc83.62 Carica papaya HOM05D005116 ORTHO05D005937 1.5e-65 254.2 435 41.8
Duzib248G1083 Durio zibethinus HOM05D005116 ORTHO05D005937 1.5e-65 254.2 417 42.2
Sed0010367 Sechium edule HOM05D005116 ORTHO05D005937 2.6e-65 253.4 404 43.6
arahy.Tifrunner.gnm1.ann1.3GE2A8 Arachis hypogaea HOM05D005116 ORTHO05D005937 4.5e-65 252.7 390 44.1
TWI59G1245 Tripterygium wilfordii HOM05D005116 ORTHO05D005937 4.5e-65 252.7 428 42.5
ClCG02G017750 Citrullus lanatus HOM05D005116 ORTHO05D005937 7.7e-65 251.9 394 44.2
FAN13G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 1.0e-64 251.5 406 44.3
Solyc07g053860.3 Solanum lycopersicum HOM05D005116 ORTHO05D005937 1.3e-64 251.1 386 46.4
Actinidia11017 Actinidia chinensis HOM05D005116 ORTHO05D005937 1.7e-64 250.8 404 43.8
Ciclev10015278m.g Citrus clementina HOM05D005116 ORTHO05D005937 4.2e-63 246.1 412 42.7
CSS0044850 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 5.5e-63 245.7 420 43.3
Potri.017G012500 Populus trichocarpa HOM05D005116 ORTHO05D005937 5.5e-63 245.7 396 45.5
Atru.chr6.2899 Acer truncatum HOM05D005116 ORTHO05D005937 7.2e-63 245.4 212 63.7
CsaV3_6G012810 Cucumis sativus L. HOM05D005116 ORTHO05D005937 1.6e-62 244.2 383 43.9
AUR62034810 Chenopodium quinoa HOM05D005116 ORTHO05D005937 4.6e-62 242.7 302 53.6
Migut.M00082 Erythranthe guttata HOM05D005116 ORTHO05D005937 4.6e-62 242.7 372 44.4
Phvul.011G115315 Phaseolus vulgaris HOM05D005116 ORTHO05D005937 1.0e-61 241.5 378 43.7
Aqoxy4G00731 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 1.4e-61 241.1 391 44.8
Lj3g0009567 Lotus japonicus HOM05D005116 ORTHO05D005937 3.0e-61 240.0 439 40.1
Prupe.4G278300 Prunus persica HOM05D005116 ORTHO05D005937 6.7e-61 238.8 233 57.1
RhsimUnG0145200 Rhododendron simsii HOM05D005116 ORTHO05D005937 6.7e-61 238.8 428 40.4
Rhsim06G0139500 Rhododendron simsii HOM05D005116 ORTHO05D005937 1.5e-60 237.7 428 40.7
DCAR_013025 Daucus carota HOM05D005116 ORTHO05D005937 5.7e-60 235.7 247 56.3
Aa31LG1G8970 Aethionema arabicum HOM05D005116 ORTHO05D005937 8.2e-59 231.9 416 40.1
CAN.G209.35 Capsicum annuum HOM05D005116 ORTHO05D005937 1.4e-58 231.1 383 45.4
Ciclev10015471m.g Citrus clementina HOM05D005116 ORTHO05D005937 1.8e-58 230.7 231 56.7
Ca_18939_v3 Cicer arietinum L. HOM05D005116 ORTHO05D005937 4.1e-58 229.6 375 40.3
MELO3C013631.2 Cucumis melo HOM05D005116 ORTHO05D005937 1.5e-57 227.6 386 43.0
HanXRQChr16g0525341 Helianthus annuus HOM05D005116 ORTHO05D005937 1.5e-57 227.6 386 42.7
THA.LOC104801168 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 1.5e-57 227.6 433 39.0
FAN18G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 2.6e-57 226.9 305 48.5
Sp1g02620 Schrenkiella parvula HOM05D005116 ORTHO05D005937 2.6e-57 226.9 412 38.3
Carub.0001s0286 Capsella rubella HOM05D005116 ORTHO05D005937 6.5e-56 222.2 413 39.0
SalBow7G1661 Salvia bowleyana HOM05D002934 ORTHO05D003937 8.5e-56 221.9 390 41.3
THA.LOC104826035 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 1.1e-55 221.5 439 38.0
MBI07_g40350_MAGBIO Magnolia biondii HOM05D005116 ORTHO05D005937 1.4e-55 221.1 398 40.7
VMungo1127G1891 Vigna mungo HOM05D005116 ORTHO05D005937 5.5e-55 219.2 367 41.4
ECA234G2480 Erigeron canadensis HOM05D005116 ORTHO05D005937 7.2e-55 218.8 398 38.7
unitig_748.g8536 Utricularia gibba HOM05D005116 ORTHO05D005937 1.6e-54 217.6 371 42.9
HanXRQChr15g0470251 Helianthus annuus HOM05D005116 ORTHO05D005937 2.1e-54 217.2 386 40.7
CARHR003090 Cardamine hirsuta HOM05D005116 ORTHO05D005937 7.9e-54 215.3 418 38.8
SGA_v2.0_scaffold108G30901 Striga asiatica HOM05D005116 ORTHO05D005937 1.8e-53 214.2 207 56.0
Sabra17G0010300 Salix brachista HOM05D005116 ORTHO05D005937 6.7e-53 212.2 214 56.1
vmacro15911 Vaccinium macrocarpon HOM05D005116 ORTHO05D005937 2.6e-52 210.3 153 69.3
Thhalv10007808m.g Eutrema salsugineum HOM05D005116 ORTHO05D005937 3.3e-52 209.9 413 37.0
AT1G03760 Arabidopsis thaliana HOM05D005116 ORTHO05D005937 9.7e-52 208.4 402 38.8
HPP92_007017 Vanilla planifolia HOM05D005116 ORTHO05D005937 2.2e-51 207.2 389 39.1
ATR0763G277 Amborella trichopoda HOM05D005116 ORTHO05D005937 3.7e-51 206.5 357 42.0
Nitab4.5_0004959g0030 Nicotiana tabacum HOM05D005116 ORTHO05D005937 8.2e-51 205.3 373 41.8
Cc00_g12320 Coffea canephora HOM05D005116 ORTHO05D005937 1.1e-50 204.9 223 55.6
Psat7g169080 Pisum sativum HOM05D005116 ORTHO05D005937 1.4e-50 204.5 392 39.0
Nitab4.5_0006721g0020 Nicotiana tabacum HOM05D005116 ORTHO05D005937 1.8e-50 204.1 382 42.7
QL08p039613 Quercus lobata HOM05D005116 ORTHO05D005937 1.8e-50 204.1 593 31.5
Lj8A109T77 Lonicera japonica HOM05D005116 ORTHO05D005937 2.5e-47 193.7 314 44.6
Medtr4g078505 Medicago truncatula HOM05D005116 ORTHO05D005937 9.4e-47 191.8 377 39.8
SEGI_12795 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 1.6e-46 191.0 420 36.4
AL1G13310 Arabidopsis lyrata HOM05D005116 ORTHO05D005937 2.1e-46 190.7 426 35.4
Oeu035627.2 Olea europaea HOM05D005116 ORTHO05D005937 8.0e-46 188.7 375 36.8
SEGI_15947 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 5.2e-45 186.0 249 45.4
PSO478G3970 Papaver somniferum HOM05D005116 ORTHO05D005937 1.1e-42 178.3 269 43.1
Actinidia11090 Actinidia chinensis HOM05D005116 ORTHO05D005937 3.5e-41 173.3 374 39.3
BcaNung07372 Brassica carinata HOM05D005116 ORTHO05D005937 4.5e-41 172.9 387 36.4
CDE02G0148 Ceratophyllum demersum HOM05D005116 ORTHO05D005937 3.8e-40 169.9 130 61.5
TPR.G29254 Trifolium pratense HOM05D005116 ORTHO05D005937 6.5e-40 169.1 169 53.3
Lsat_1_v5_gn_4_29780 Lactuca sativa HOM05D005116 ORTHO05D005937 1.2e-38 164.9 305 40.7
C05p02100 Brassica napus HOM05D005116 ORTHO05D005937 8.0e-38 162.2 393 35.9
BolC5t28987H Brassica oleracea HOM05D005116 ORTHO05D005937 3.0e-37 160.2 393 35.1
BcaC05g24513 Brassica carinata HOM05D005116 ORTHO05D005937 6.8e-37 159.1 393 35.1
Pp3c13_17680 Physcomitrium patens HOM05D005116 ORTHO05D005937 2.6e-36 157.1 200 44.0
BraA10t42497Z Brassica rapa HOM05D005116 ORTHO05D005937 5.7e-36 156.0 377 35.8
SMO115G0247 Selaginella moellendorffii HOM05D005116 ORTHO05D005937 1.7e-32 144.4 372 32.3
Haze_13200 Corylus avellana HOM05D005116 ORTHO05D005937 8.5e-32 142.1 509 29.3
Gorai.005G200500 Gossypium raimondii HOM05D005116 ORTHO05D005937 4.2e-31 139.8 213 46.0
Mapoly0076s0049 Marchantia polymorpha HOM05D005116 ORTHO05D005937 3.6e-30 136.7 379 31.4
Zm00001eb142460 Zea mays HOM05D005116 ORTHO05D005937 3.0e-29 133.7 356 34.8
CBR_g73964 Chara braunii HOM05D005116 ORTHO05D005937 1.5e-28 131.3 228 39.0
BcaC02g07427 Brassica carinata HOM05D005116 ORTHO05D005937 9.8e-28 128.6 138 46.4
AagrBONN_evm.TU.Sc2ySwM_344.4439 Anthoceros agrestis HOM05D005116 ORTHO05D005937 6.3e-27 125.9 193 38.9
A10p02290 Brassica napus HOM05D005116 ORTHO05D005937 2.4e-26 124.0 310 35.8
Aqoxy4G00799 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 3.5e-25 120.2 228 38.6
Peaxi162Scf01415g00032 Petunia axillaris HOM05D005116 ORTHO05D005937 3.5e-25 120.2 379 33.0
Gohir.D02G178750 Gossypium hirsutum HOM05D005116 ORTHO05D005937 1.1e-23 115.2 220 41.4
C04p67500 Brassica napus HOM05D005116 ORTHO05D005937 5.6e-23 112.8 350 32.3
BolC4t28247H Brassica oleracea HOM05D005116 ORTHO05D005937 5.6e-23 112.8 109 50.5
AagrBONN_evm.TU.Sc2ySwM_368.1082 Anthoceros agrestis HOM05D005116 ORTHO05D005937 3.6e-22 110.2 127 44.1
Os01g0928300 Oryza sativa ssp. japonica HOM05D005116 ORTHO05D005937 2.6e-20 104.0 87 57.5
Nitab4.5_0001752g0050 Nicotiana tabacum HOM05D005116 ORTHO05D005937 4.4e-20 103.2 83 62.7
Glyma.12G137500 Glycine max HOM05D005116 ORTHO05D005937 1.3e-19 101.7 75 62.7
Gohir.A03G155650 Gossypium hirsutum HOM05D005116 ORTHO05D005937 6.6e-16 89.4 230 36.1
Lj8C109T10 Lonicera japonica HOM05D005116 ORTHO05D005937 1.9e-15 87.8 62 67.7
Nitab4.5_0000638g0150 Nicotiana tabacum HOM05D005116 ORTHO05D005937 1.4e-13 81.6 116 42.2
C03p22830 Brassica napus HOM05D000229 ORTHO05D005937 4.0e-13 80.1 105 40.0
Oeu044722.1 Olea europaea HOM05D005116 ORTHO05D005937 6.8e-13 79.3 177 34.5
Cre13.g576350 Chlamydomonas reinhardtii HOM05D005116 ORTHO05D005937 8.9e-13 79.0 131 36.6
Oeu023568.1 Olea europaea HOM05D005116 ORTHO05D005937 2.9e-11 73.9 43 72.1
BcaB06g29108 Brassica carinata HOM05D005116 ORTHO05D005937 3.2e-10 70.5 296 31.8
BcaC07g36947 Brassica carinata HOM05D005116 ORTHO05D005937 9.2e-10 68.9 195 32.8
MSTRG.25027 Avicennia marina HOM05D005116 ORTHO05D005937 2.0e-09 67.8 252 31.3
C08p00750 Brassica napus HOM05D005116 ORTHO05D031782 1.7e-08 64.7 305 28.2
BcaC03g18340 Brassica carinata HOM05D005116 ORTHO05D005937 6.6e-08 62.8 86 39.5
C04p61610 Brassica napus HOM05D000171 ORTHO05D000101 2.5e-07 60.8 84 39.3
BcaNung07287 Brassica carinata HOM05D005116 ORTHO05D005937 3.3e-07 60.5 55 52.7
BolC2t12481H Brassica oleracea HOM05D005116 ORTHO05D005937 3.3e-07 60.5 84 38.1
BcaC01g05723 Brassica carinata HOM05D005116 ORTHO05D005937 5.6e-07 59.7 84 38.1
arahy.Tifrunner.gnm1.ann1.13T34P Arachis hypogaea HOM05D000168 ORTHO05D000811 2.1e-06 57.8 55 47.3
Glyma.19G101401 Glycine max HOM05D000147 ORTHO05D005937 4.7e-06 56.6 55 50.9


User provided reference genes

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