Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62029765 Chenopodium quinoa HOM05D007752 ORTHO05D009994 2.1e-197 693.0 612 100.0
AUR62006417 Chenopodium quinoa HOM05D007752 ORTHO05D000248 1.9e-166 590.1 611 88.5
EL10Ac7g17101 Beta vulgaris HOM05D007752 ORTHO05D000248 8.9e-103 378.6 611 74.6
Ah.08g209310 Amaranthus hybridus HOM05D007752 ORTHO05D009994 5.1e-66 256.5 482 72.6
Ah.08g209300 Amaranthus hybridus HOM05D007999 ORTHO05D000248 5.7e-33 146.7 131 61.1
COL.COLO4_06481 Corchorus olitorius HOM05D007752 ORTHO05D000248 5.9e-30 136.7 266 36.5
FAN14G1029 Fragaria x ananassa HOM05D007752 ORTHO05D009994 2.8e-24 117.9 266 34.6
Rhsim04G0121800 Rhododendron simsii HOM05D007752 ORTHO05D009994 3.7e-24 117.5 387 63.0
FAN09G1066 Fragaria x ananassa HOM05D007752 ORTHO05D009994 1.1e-23 115.9 268 34.3
Ah.15g090020 Amaranthus hybridus HOM05D007752 ORTHO05D000248 1.8e-23 115.2 132 53.8
CSS0006720 Camellia sinensis var. sinensis HOM05D007752 ORTHO05D009994 1.7e-21 108.6 447 48.8
Sc20g0006950 Simmondsia chinensis HOM05D007752 ORTHO05D009994 6.5e-21 106.7 157 36.3
Haze_21175 Corylus avellana HOM05D007752 ORTHO05D009994 3.6e-19 100.9 141 41.1
QL07p032115 Quercus lobata HOM05D007752 ORTHO05D009994 7.9e-19 99.8 104 48.1
Sabra04G0153400 Salix brachista HOM05D007752 ORTHO05D009994 1.0e-18 99.4 458 57.2
CiPaw.10G164800 Carya illinoinensis HOM05D007752 ORTHO05D009994 5.1e-18 97.1 447 51.9
Hma1.2p1_0174F.1_g076820 Hydrangea macrophylla HOM05D007752 ORTHO05D009994 5.1e-18 97.1 115 47.0
Dinv16979 Davidia involucrata HOM05D007752 ORTHO05D009994 1.7e-16 92.0 105 45.7
Ciclev10013314m.g Citrus clementina HOM05D007752 ORTHO05D009994 2.2e-16 91.7 104 43.3
RcHm_v2.0_Chr3g0460471 Rosa chinensis HOM05D007752 ORTHO05D009994 2.2e-16 91.7 101 51.5
Cfa017034 Carpinus fangiana HOM05D007752 ORTHO05D009994 3.7e-16 90.9 132 42.4
PSO170G5102 Papaver somniferum HOM05D007752 ORTHO05D009994 3.7e-16 90.9 156 31.4
CANSAT35G0798 Cannabis sativa HOM05D007752 ORTHO05D009994 6.3e-16 90.1 409 54.0
Thecc.04G151600 Theobroma cacao HOM05D007752 ORTHO05D009994 3.1e-15 87.8 156 65.4
Gorai.005G004200 Gossypium raimondii HOM05D007752 ORTHO05D009994 4.1e-15 87.4 154 50.0
PSO017G1004 Papaver somniferum HOM05D007752 ORTHO05D009994 5.3e-15 87.0 156 30.8
CSS0000350 Camellia sinensis var. sinensis HOM05D007752 ORTHO05D009994 7.0e-15 86.7 89 48.3
Duzib151G0981 Durio zibethinus HOM05D007752 ORTHO05D009994 7.0e-15 86.7 125 40.0
TWI77G0759 Tripterygium wilfordii HOM05D007752 ORTHO05D009994 7.0e-15 86.7 92 47.8
Potri.016G136700 Populus trichocarpa HOM05D007752 ORTHO05D009994 1.5e-14 85.5 115 40.9
PGR031G1793 Punica granatum HOM05D007752 ORTHO05D009994 1.5e-14 85.5 132 38.6
Prupe.6G293600 Prunus persica HOM05D007752 ORTHO05D009994 2.0e-14 85.1 114 44.7
Manes.09G117900 Manihot esculenta HOM05D007999 ORTHO05D000248 3.5e-14 84.3 131 42.0
MD04G1174700 Malus domestica HOM05D007752 ORTHO05D009994 4.5e-14 84.0 156 55.1
Gohir.A02G003300 Gossypium hirsutum HOM05D007752 ORTHO05D009994 5.9e-14 83.6 104 43.3
Dinv25344 Davidia involucrata HOM05D007999 ORTHO05D000248 7.7e-14 83.2 97 49.5
FvH4_6g09870 Fragaria vesca HOM05D007752 ORTHO05D009994 7.7e-14 83.2 101 45.5
Lj3P941T40 Lonicera japonica HOM05D007752 ORTHO05D009994 1.0e-13 82.8 93 47.3
Sabra04G0153500 Salix brachista HOM05D007999 ORTHO05D000248 1.0e-13 82.8 131 53.4
Potri.016G136800 Populus trichocarpa HOM05D007999 ORTHO05D000248 2.2e-13 81.6 134 50.7
Actinidia29032 Actinidia chinensis HOM05D007752 ORTHO05D009994 2.9e-13 81.3 264 29.2
FAN02G1651 Fragaria x ananassa HOM05D007752 ORTHO05D009994 2.9e-13 81.3 101 44.6
VMungo1383G3403 Vigna mungo HOM05D007752 ORTHO05D009994 3.8e-13 80.9 122 36.9
Oeu057981.1 Olea europaea HOM05D007752 ORTHO05D009994 5.0e-13 80.5 97 42.3
Sc20g0006960 Simmondsia chinensis HOM05D007752 ORTHO05D009994 8.5e-13 79.7 63 55.6
Eucgr.A00738 Eucalyptus grandis HOM05D007752 ORTHO05D009994 1.9e-12 78.6 339 61.7
Lj1g0026088 Lotus japonicus HOM05D007752 ORTHO05D009994 4.2e-12 77.4 106 36.8
Thecc.04G151500 Theobroma cacao HOM05D007999 ORTHO05D000248 4.2e-12 77.4 93 47.3
Cfa017033 Carpinus fangiana HOM05D007999 ORTHO05D000248 5.5e-12 77.0 129 40.3
Medtr7g073270 Medicago truncatula HOM05D007999 ORTHO05D000248 7.2e-12 76.6 87 48.3
Peaxi162Scf00732g00031 Petunia axillaris HOM05D007752 ORTHO05D000248 7.2e-12 76.6 266 28.6
ClCG10G022730 Citrullus lanatus HOM05D007752 ORTHO05D009994 9.4e-12 76.3 88 44.3
Haze_21176 Corylus avellana HOM05D007999 ORTHO05D000248 9.4e-12 76.3 129 38.8
Cpa.g.sc86.58 Carica papaya HOM05D007999 ORTHO05D000248 1.6e-11 75.5 129 38.8
FAN02G1196 Fragaria x ananassa HOM05D007999 ORTHO05D000248 1.6e-11 75.5 95 48.4
RcHm_v2.0_Chr3g0460461 Rosa chinensis HOM05D007999 ORTHO05D000248 1.6e-11 75.5 101 46.5
Ciclev10013035m.g Citrus clementina HOM05D007999 ORTHO05D000248 2.1e-11 75.1 104 45.2
TAR633G0335 Trochodendron aralioides HOM05D007752 ORTHO05D009994 2.1e-11 75.1 140 30.0
FvH4_6g09860 Fragaria vesca HOM05D007999 ORTHO05D000248 2.7e-11 74.7 94 46.8
Phvul.008G082800 Phaseolus vulgaris HOM05D007752 ORTHO05D009994 2.7e-11 74.7 118 35.6
Medtr4g028110 Medicago truncatula HOM05D007999 ORTHO05D000248 4.7e-11 73.9 99 49.5
Aqoxy4G02425 Aquilegia oxysepala HOM05D007752 ORTHO05D009994 6.1e-11 73.6 80 50.0
Gohir.A03G087400 Gossypium hirsutum HOM05D007999 ORTHO05D000248 6.1e-11 73.6 95 43.2
Gohir.D02G108100 Gossypium hirsutum HOM05D007999 ORTHO05D000248 6.1e-11 73.6 95 43.2
Nitab4.5_0004433g0050 Nicotiana tabacum HOM05D007999 ORTHO05D000248 6.1e-11 73.6 134 39.6
Oeu060433.1 Olea europaea HOM05D007999 ORTHO05D000248 6.1e-11 73.6 129 38.0
QL07p032111 Quercus lobata HOM05D007999 ORTHO05D000248 6.1e-11 73.6 100 43.0
Sed0005875 Sechium edule HOM05D007752 ORTHO05D009994 6.1e-11 73.6 87 41.4
Cpa.g.sc86.57 Carica papaya HOM05D007752 ORTHO05D009994 8.0e-11 73.2 91 41.8
VMungo0720G0765 Vigna mungo HOM05D007752 ORTHO05D009994 1.0e-10 72.8 68 48.5
Gorai.005G122700 Gossypium raimondii HOM05D007999 ORTHO05D000248 1.4e-10 72.4 95 42.1
Sopen09g015370 Solanum pennellii HOM05D007999 ORTHO05D000248 1.4e-10 72.4 88 48.9
Ca_07763_v3 Cicer arietinum L. HOM05D007752 ORTHO05D009994 2.3e-10 71.6 333 60.7
Psat3g118800 Pisum sativum HOM05D007999 ORTHO05D000248 2.3e-10 71.6 97 48.5
CiPaw.09G221400 Carya illinoinensis HOM05D007999 ORTHO05D000248 3.0e-10 71.2 124 35.5
Glyma.09G274800 Glycine max HOM05D007752 ORTHO05D009994 3.9e-10 70.9 126 33.3
Actinidia11508 Actinidia chinensis HOM05D007999 ORTHO05D000248 5.2e-10 70.5 131 36.6
Gohir.D02G003700 Gossypium hirsutum HOM05D007752 ORTHO05D009994 5.2e-10 70.5 90 41.1
TAR636G2047 Trochodendron aralioides HOM05D007999 ORTHO05D000248 5.2e-10 70.5 129 39.5
Lsat_1_v5_gn_5_152320 Lactuca sativa HOM05D007752 ORTHO05D009994 8.8e-10 69.7 71 46.5
Nn2g10298 Nelumbo nucifera HOM05D007999 ORTHO05D000248 8.8e-10 69.7 92 50.0
SGA_v2.0_scaffold373G50183 Striga asiatica HOM05D007999 ORTHO05D000248 8.8e-10 69.7 93 46.2
Ca_26988_v3 Cicer arietinum L. HOM05D007999 ORTHO05D000248 1.1e-09 69.3 98 46.9
Migut.J00038 Erythranthe guttata HOM05D007752 ORTHO05D009994 1.1e-09 69.3 123 37.4
Nitab4.5_0000048g0020 Nicotiana tabacum HOM05D007999 ORTHO05D000248 1.1e-09 69.3 135 38.5
TPR.G14122 Trifolium pratense HOM05D007999 ORTHO05D000248 1.5e-09 68.9 92 46.7
Solyc09g042230.2 Solanum lycopersicum HOM05D007999 ORTHO05D000248 2.0e-09 68.6 95 44.2
Phvul.010G070300 Phaseolus vulgaris HOM05D007999 ORTHO05D000248 2.6e-09 68.2 135 37.0
TAR267G0002 Trochodendron aralioides HOM05D007999 ORTHO05D000248 2.6e-09 68.2 129 38.8
Lalb_Chr07g0190371 Lupinus albus HOM05D007999 ORTHO05D000248 3.3e-09 67.8 129 36.4
HPP92_024978 Vanilla planifolia HOM05D007752 ORTHO05D009994 3.3e-09 67.8 85 40.0
CDE06G1380 Ceratophyllum demersum HOM05D007752 ORTHO05D009994 5.7e-09 67.0 91 37.4
Migut.J00037 Erythranthe guttata HOM05D007999 ORTHO05D000248 5.7e-09 67.0 95 44.2
Lsat_1_v5_gn_8_107720 Lactuca sativa HOM05D007999 ORTHO05D000248 5.7e-09 67.0 104 42.3
Psat7g234760 Pisum sativum HOM05D007999 ORTHO05D000248 5.7e-09 67.0 137 39.4
Sc20g0006970 Simmondsia chinensis HOM05D007999 ORTHO05D000248 5.7e-09 67.0 130 39.2
MSTRG.5499 Avicennia marina HOM05D007999 ORTHO05D000248 7.4e-09 66.6 96 41.7
Glyma.01G133200 Glycine max HOM05D007999 ORTHO05D000248 7.4e-09 66.6 134 38.1
Nn2g10299 Nelumbo nucifera HOM05D007752 ORTHO05D009994 7.4e-09 66.6 110 36.4
PGSC0003DMG400031466 Solanum tuberosum HOM05D007999 ORTHO05D000248 7.4e-09 66.6 96 44.8
Peaxi162Scf00732g00333 Petunia axillaris HOM05D007999 ORTHO05D000248 9.7e-09 66.2 101 41.6
Phvul.008G082700 Phaseolus vulgaris HOM05D007999 ORTHO05D000248 9.7e-09 66.2 136 40.4
Eucgr.A00736 Eucalyptus grandis HOM05D007752 ORTHO05D009994 1.3e-08 65.9 50 56.0
Manes.08G171200 Manihot esculenta HOM05D007752 ORTHO05D009994 1.3e-08 65.9 54 55.6
Rhsim05G0230600 Rhododendron simsii HOM05D007999 ORTHO05D000248 1.3e-08 65.9 133 36.8
VMungo0331G0380 Vigna mungo HOM05D007999 ORTHO05D000248 1.3e-08 65.9 132 36.4
Solyc09g042250.2 Solanum lycopersicum HOM05D007752 ORTHO05D009994 1.7e-08 65.5 77 42.9
Sopen09g015390 Solanum pennellii HOM05D007752 ORTHO05D009994 1.7e-08 65.5 77 42.9
SalBow1G4712 Salvia bowleyana HOM05D007752 ORTHO05D009994 2.2e-08 65.1 87 37.9
Hma1.2p1_0537F.1_g174340 Hydrangea macrophylla HOM05D007999 ORTHO05D000248 2.8e-08 64.7 138 39.1
SalBow8G2716 Salvia bowleyana HOM05D007752 ORTHO05D009994 2.8e-08 64.7 91 38.5
MELO3C009103.2 Cucumis melo HOM05D007752 ORTHO05D009994 3.7e-08 64.3 92 37.0
Peaxi162Scf00141g00093 Petunia axillaris HOM05D007752 ORTHO05D009994 4.8e-08 63.9 80 43.8
Glyma.03G034300 Glycine max HOM05D007999 ORTHO05D000248 6.3e-08 63.5 132 35.6
Psat3g118880 Pisum sativum HOM05D007752 ORTHO05D009994 6.3e-08 63.5 145 31.0
Prupe.6G293700 Prunus persica HOM05D007999 ORTHO05D000248 6.3e-08 63.5 128 33.6
SalBow1G2062 Salvia bowleyana HOM05D007752 ORTHO05D009994 6.3e-08 63.5 102 34.3
MBI03_g22789_MAGBIO Magnolia biondii HOM05D007752 ORTHO05D009994 8.2e-08 63.2 101 34.7
SalBow5G4979 Salvia bowleyana HOM05D007752 ORTHO05D009994 8.2e-08 63.2 111 33.3
Oeu060211.1 Olea europaea HOM05D000784 ORTHO05D000248 1.4e-07 62.4 88 44.3
TPR.G14113 Trifolium pratense HOM05D007752 ORTHO05D009994 1.8e-07 62.0 123 31.7
Medtr7g073260 Medicago truncatula HOM05D007752 ORTHO05D009994 2.4e-07 61.6 126 31.0
Nitab4.5_0004433g0030 Nicotiana tabacum HOM05D007752 ORTHO05D009994 2.4e-07 61.6 95 38.9
VMungo0251G1651 Vigna mungo HOM05D007752 ORTHO05D009994 2.4e-07 61.6 55 47.3
MBI03_g22788_MAGBIO Magnolia biondii HOM05D007999 ORTHO05D000248 5.3e-07 60.5 83 45.8
VMungo1383G2835 Vigna mungo HOM05D007999 ORTHO05D000248 5.3e-07 60.5 132 38.6
HanXRQChr01g0000111 Helianthus annuus HOM05D007752 ORTHO05D009994 9.1e-07 59.7 124 36.3
Aqoxy4G02427 Aquilegia oxysepala HOM05D007999 ORTHO05D000248 1.2e-06 59.3 80 42.5
Os03g0336000 Oryza sativa ssp. japonica HOM05D007752 ORTHO05D009994 1.6e-06 58.9 97 29.9
TPR.G5017 Trifolium pratense HOM05D007999 ORTHO05D000248 1.6e-06 58.9 99 44.4
Lsat_1_v5_gn_2_126841 Lactuca sativa HOM05D000162 ORTHO05D000090 2.0e-06 58.5 66 43.9
ECA236G4781 Erigeron canadensis HOM05D007999 ORTHO05D000248 2.6e-06 58.2 75 45.3
CDE04G1037 Ceratophyllum demersum HOM05D007752 ORTHO05D009994 3.5e-06 57.8 75 37.3
ClCG10G022740 Citrullus lanatus HOM05D007999 ORTHO05D000248 3.5e-06 57.8 103 39.8
Oeu060213.1 Olea europaea HOM05D007999 ORTHO05D000248 4.5e-06 57.4 90 42.2


User provided reference genes

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