Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62029595 Chenopodium quinoa HOM05D004288 ORTHO05D004997 1.4e-38 162.5 87 100.0
AUR62024064 Chenopodium quinoa HOM05D004288 ORTHO05D004997 1.7e-31 139.0 80 95.0
AUR62041737 Chenopodium quinoa HOM05D004288 ORTHO05D004997 4.9e-31 137.5 88 89.8
AUR62024063 Chenopodium quinoa HOM05D004288 ORTHO05D004997 6.8e-17 90.5 70 67.1
AUR62041736 Chenopodium quinoa HOM05D004288 ORTHO05D004997 8.4e-15 83.6 62 66.1
Ah.05g167180 Amaranthus hybridus HOM05D004288 ORTHO05D004997 1.1e-14 83.2 86 54.7
EL10As7g23804 Beta vulgaris HOM05D004288 ORTHO05D004997 4.2e-14 81.3 89 53.9
Dinv44970 Davidia involucrata HOM05D004288 ORTHO05D004997 7.3e-11 70.5 63 63.5
Hund14391 Selenicereus undatus HOM05D004288 ORTHO05D004997 7.3e-11 70.5 81 54.3
MD08G1087000 Malus domestica HOM05D004288 ORTHO05D004997 9.6e-11 70.1 59 61.0
CiPaw.07G176600 Carya illinoinensis HOM05D004288 ORTHO05D004997 4.8e-10 67.8 65 55.4
Peaxi162Scf00081g01322 Petunia axillaris HOM05D004288 ORTHO05D004997 8.1e-10 67.0 62 54.8
Potri.014G017600 Populus trichocarpa HOM05D004288 ORTHO05D004997 1.4e-09 66.2 64 56.2
Actinidia22683 Actinidia chinensis HOM05D004288 ORTHO05D004997 5.3e-09 64.3 61 54.1
CANSAT25G2350 Cannabis sativa HOM05D004288 ORTHO05D004997 5.3e-09 64.3 64 50.0
GSVIVG01009362001 Vitis vinifera HOM05D004288 ORTHO05D004997 5.3e-09 64.3 68 55.9
Sc02g0007800 Simmondsia chinensis HOM05D003189 ORTHO05D003449 6.9e-09 63.9 72 48.6
Sopen04g031610 Solanum pennellii HOM05D004288 ORTHO05D004997 6.9e-09 63.9 66 48.5
FvH4_2g33280 Fragaria vesca HOM05D004288 ORTHO05D004997 9.0e-09 63.5 65 55.4
FAN15G0972 Fragaria x ananassa HOM05D004288 ORTHO05D004997 9.0e-09 63.5 65 55.4
FAN24G2538 Fragaria x ananassa HOM05D004288 ORTHO05D004997 9.0e-09 63.5 65 55.4
Atru.chr13.813 Acer truncatum HOM05D004288 ORTHO05D004997 1.5e-08 62.8 63 57.1
AUR62029596 Chenopodium quinoa HOM05D004288 ORTHO05D004997 1.5e-08 62.8 40 75.0
RcHm_v2.0_Chr6g0309361 Rosa chinensis HOM05D004288 ORTHO05D004997 1.5e-08 62.8 65 53.8
PGSC0003DMG400021529 Solanum tuberosum HOM05D004288 ORTHO05D004997 1.5e-08 62.8 66 48.5
Actinidia10187 Actinidia chinensis HOM05D004288 ORTHO05D004997 2.6e-08 62.0 61 52.5
Haze_22316 Corylus avellana HOM05D004288 ORTHO05D004997 2.6e-08 62.0 65 53.8
FAN27G1232 Fragaria x ananassa HOM05D004288 ORTHO05D004997 2.6e-08 62.0 65 53.8
Oeu057368.1 Olea europaea HOM05D004288 ORTHO05D004997 2.6e-08 62.0 62 56.5
Sopen12g030390 Solanum pennellii HOM05D004288 ORTHO05D004997 2.6e-08 62.0 62 56.5
Solyc04g078010.4 Solanum lycopersicum HOM05D004288 ORTHO05D004997 3.4e-08 61.6 67 49.3
QL12p037641 Quercus lobata HOM05D004288 ORTHO05D004997 4.4e-08 61.2 65 44.6
CiPaw.08G049000 Carya illinoinensis HOM05D004288 ORTHO05D004997 5.8e-08 60.8 66 51.5
Solyc12g088410.3 Solanum lycopersicum HOM05D004288 ORTHO05D004997 5.8e-08 60.8 62 54.8
SalBow7G4748 Salvia bowleyana HOM05D004288 ORTHO05D004997 9.9e-08 60.1 66 53.0
Cfa013675 Carpinus fangiana HOM05D004288 ORTHO05D004997 1.3e-07 59.7 65 50.8
Ciclev10002881m.g Citrus clementina HOM05D004288 ORTHO05D004997 1.7e-07 59.3 62 51.6
FAN20G2816 Fragaria x ananassa HOM05D004288 ORTHO05D004997 1.7e-07 59.3 65 52.3
Nitab4.5_0011511g0010 Nicotiana tabacum HOM05D004288 ORTHO05D004997 1.7e-07 59.3 64 53.1
Sabra14G0011500 Salix brachista HOM05D004288 ORTHO05D004997 1.7e-07 59.3 66 53.0
Glyma.17G236500 Glycine max HOM05D004288 ORTHO05D004997 2.2e-07 58.9 67 49.3
MD15G1071700 Malus domestica HOM05D004288 ORTHO05D004997 2.2e-07 58.9 65 50.8
Rhsim06G0060800 Rhododendron simsii HOM05D004288 ORTHO05D004997 2.2e-07 58.9 66 53.0
TPR.G11815 Trifolium pratense HOM05D004288 ORTHO05D004997 2.2e-07 58.9 66 50.0
CiPaw.08G113500 Carya illinoinensis HOM05D004288 ORTHO05D004997 2.9e-07 58.5 69 50.7
DCAR_012811 Daucus carota HOM05D004288 ORTHO05D004997 2.9e-07 58.5 58 56.9
Prupe.1G424700 Prunus persica HOM05D004288 ORTHO05D004997 2.9e-07 58.5 57 54.4
PGSC0003DMG401011559 Solanum tuberosum HOM05D004288 ORTHO05D004997 2.9e-07 58.5 61 52.5
Cc10_g05620 Coffea canephora HOM05D004288 ORTHO05D004997 3.8e-07 58.2 64 51.6
Dinv39247 Davidia involucrata HOM05D004288 ORTHO05D004997 3.8e-07 58.2 62 51.6
Migut.C00495 Erythranthe guttata HOM05D004288 ORTHO05D004997 4.9e-07 57.8 39 71.8
Glyma.14G087800 Glycine max HOM05D004288 ORTHO05D004997 6.4e-07 57.4 67 46.3
Peaxi162Scf00160g00120 Petunia axillaris HOM05D004288 ORTHO05D004997 6.4e-07 57.4 65 46.2
Zm00001eb007460 Zea mays HOM05D004288 ORTHO05D004997 6.4e-07 57.4 62 48.4
Gohir.A05G208400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 1.1e-06 56.6 66 48.5
Nitab4.5_0000569g0070 Nicotiana tabacum HOM05D004288 ORTHO05D004997 1.1e-06 56.6 64 48.4
Phvul.001G026500 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 1.1e-06 56.6 70 48.6
TAR376G0993 Trochodendron aralioides HOM05D004288 ORTHO05D004997 1.1e-06 56.6 65 47.7
Medtr1g018470 Medicago truncatula HOM05D004288 ORTHO05D004997 1.4e-06 56.2 65 44.6
Medtr1g418505 Medicago truncatula HOM05D004288 ORTHO05D004997 1.4e-06 56.2 65 44.6
vmacro21447 Vaccinium macrocarpon HOM05D004288 ORTHO05D004997 1.4e-06 56.2 57 54.4
Gohir.D05G211900 Gossypium hirsutum HOM05D004288 ORTHO05D004997 1.9e-06 55.8 66 48.5
Gorai.009G218500 Gossypium raimondii HOM05D004288 ORTHO05D004997 1.9e-06 55.8 66 48.5
Duzib041G0778 Durio zibethinus HOM05D004288 ORTHO05D004997 2.4e-06 55.5 64 51.6
HanXRQChr01g0027971 Helianthus annuus HOM05D004288 ORTHO05D004997 2.4e-06 55.5 38 71.1
Hma1.2p1_0819F.1_g223820 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 2.4e-06 55.5 65 49.2
SalBow6G1935 Salvia bowleyana HOM05D004288 ORTHO05D004997 2.4e-06 55.5 39 64.1
SalBow8G0960 Salvia bowleyana HOM05D004288 ORTHO05D004997 2.4e-06 55.5 39 64.1
CiPaw.13G085100 Carya illinoinensis HOM05D004288 ORTHO05D004997 3.2e-06 55.1 69 50.7
Manes.18G045000 Manihot esculenta HOM05D004288 ORTHO05D004997 3.2e-06 55.1 58 50.0
Sed0012219 Sechium edule HOM05D004288 ORTHO05D004997 3.2e-06 55.1 41 61.0
TPR.G3776 Trifolium pratense HOM05D004288 ORTHO05D004997 3.2e-06 55.1 66 47.0
CAN.G107.3 Capsicum annuum HOM05D004288 ORTHO05D004997 4.2e-06 54.7 68 50.0
CsaV3_4G034910 Cucumis sativus L. HOM05D004288 ORTHO05D003449 4.2e-06 54.7 39 61.5
Duzib116G0008 Durio zibethinus HOM05D004288 ORTHO05D004997 4.2e-06 54.7 65 46.2
Rhsim07G0221200 Rhododendron simsii HOM05D004288 ORTHO05D004997 4.2e-06 54.7 55 50.9
THA.LOC104825767 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 4.2e-06 54.7 64 48.4
TWI12G0116 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 4.2e-06 54.7 60 46.7
Psat6g016040 Pisum sativum HOM05D004288 ORTHO05D004997 5.4e-06 54.3 78 43.6
Thecc.08G091000 Theobroma cacao HOM05D004288 ORTHO05D004997 5.4e-06 54.3 62 51.6
MELO3C016806.2 Cucumis melo HOM05D004288 ORTHO05D004997 7.1e-06 53.9 38 63.2
Nitab4.5_0000934g0110 Nicotiana tabacum HOM05D004288 ORTHO05D004997 7.1e-06 53.9 66 47.0
CiPaw.04G152800 Carya illinoinensis HOM05D004288 ORTHO05D004997 9.3e-06 53.5 65 52.3
MBI16_g22811_MAGBIO Magnolia biondii HOM05D004288 ORTHO05D004997 9.3e-06 53.5 70 51.4


User provided reference genes

Program Settings