Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62029547 Chenopodium quinoa HOM05D000123 ORTHO05D000064 8.3e-202 706.8 357 100.0
AUR62020872 Chenopodium quinoa HOM05D000123 ORTHO05D000064 3.9e-175 618.2 320 97.8
AUR62018547 Chenopodium quinoa HOM05D000123 ORTHO05D000064 1.8e-172 609.4 320 96.6
EL10Ac3g07447 Beta vulgaris HOM05D000123 ORTHO05D000064 1.0e-138 497.3 321 80.7
Hund24427 Selenicereus undatus HOM05D000123 ORTHO05D000064 2.3e-103 379.8 321 64.2
Sc19g0007400 Simmondsia chinensis HOM05D000123 ORTHO05D000064 7.8e-83 311.6 320 55.6
Manes.15G057200 Manihot esculenta HOM05D000123 ORTHO05D000064 1.7e-74 283.9 323 51.4
Dinv27196 Davidia involucrata HOM05D000123 ORTHO05D000064 2.8e-72 276.6 322 50.9
Lalb_Chr12g0205651 Lupinus albus HOM05D000123 ORTHO05D000064 7.5e-70 268.5 326 49.1
Potri.001G320900 Populus trichocarpa HOM05D000123 ORTHO05D000064 1.1e-68 264.6 324 49.4
Glyma.08G108600 Glycine max HOM05D000123 ORTHO05D000064 3.5e-67 259.6 325 47.4
Lalb_Chr13g0294801 Lupinus albus HOM05D000123 ORTHO05D000064 3.5e-67 259.6 326 47.2
VMungo0540G0571 Vigna mungo HOM05D000123 ORTHO05D000064 4.6e-67 259.2 325 48.9
Thecc.04G194400 Theobroma cacao HOM05D000123 ORTHO05D000064 1.0e-66 258.1 323 48.3
Glyma.05G151800 Glycine max HOM05D000123 ORTHO05D000064 2.3e-66 256.9 325 47.4
Phvul.006G034200 Phaseolus vulgaris HOM05D000123 ORTHO05D000064 2.3e-66 256.9 326 47.2
Potri.017G059600 Populus trichocarpa HOM05D000123 ORTHO05D000064 3.3e-65 253.1 324 46.6
Sabra16G0203400 Salix brachista HOM05D000123 ORTHO05D000064 7.3e-65 251.9 323 46.1
Prupe.1G165500 Prunus persica HOM05D000123 ORTHO05D000064 1.2e-64 251.1 323 49.2
CSS0030426 Camellia sinensis var. sinensis HOM05D000123 ORTHO05D000064 2.1e-64 250.4 324 50.0
CSS0042244 Camellia sinensis var. sinensis HOM05D000123 ORTHO05D000064 6.2e-64 248.8 324 49.7
Atru.chr4.1571 Acer truncatum HOM05D000123 ORTHO05D000064 4.0e-63 246.1 323 46.4
Ciclev10005059m.g Citrus clementina HOM05D000123 ORTHO05D000064 4.0e-63 246.1 325 46.2
Duzib151G0692 Durio zibethinus HOM05D000123 ORTHO05D000064 4.0e-63 246.1 323 47.7
MD00G1118600 Malus domestica HOM05D000123 ORTHO05D000064 4.0e-63 246.1 323 47.7
Eucgr.H02675 Eucalyptus grandis HOM05D000123 ORTHO05D000064 8.9e-63 245.0 322 46.0
Lj4g0009353 Lotus japonicus HOM05D000123 ORTHO05D000064 1.2e-62 244.6 330 47.6
Psat7g075440 Pisum sativum HOM05D000123 ORTHO05D000064 1.2e-62 244.6 326 45.4
Ca_17986_v3 Cicer arietinum L. HOM05D000123 ORTHO05D000064 1.5e-62 244.2 329 46.8
DCAR_026657 Daucus carota HOM05D000123 ORTHO05D000064 3.7e-61 239.6 326 46.9
Sabra17G0053300 Salix brachista HOM05D000123 ORTHO05D000064 4.9e-61 239.2 326 46.3
arahy.Tifrunner.gnm1.ann1.Q5BT9L Arachis hypogaea HOM05D000123 ORTHO05D000064 6.4e-61 238.8 329 46.2
QL06p025609 Quercus lobata HOM05D000123 ORTHO05D000064 1.4e-60 237.7 324 45.7
arahy.Tifrunner.gnm1.ann1.KQ4R6B Arachis hypogaea HOM05D000123 ORTHO05D000064 1.9e-60 237.3 329 45.3
arahy.Tifrunner.gnm1.ann1.Z4K8EF Arachis hypogaea HOM05D000123 ORTHO05D000064 5.4e-60 235.7 326 45.7
MD04G1017400 Malus domestica HOM05D000123 ORTHO05D000064 5.4e-60 235.7 323 45.5
Haze_11657 Corylus avellana HOM05D000123 ORTHO05D000064 1.2e-59 234.6 326 44.5
Cfa014965 Carpinus fangiana HOM05D000123 ORTHO05D000064 3.5e-59 233.0 326 44.5
TWI53G0654 Tripterygium wilfordii HOM05D000123 ORTHO05D000064 7.8e-59 231.9 323 46.7
TPR.G11814 Trifolium pratense HOM05D000123 ORTHO05D000064 1.0e-58 231.5 326 44.5
FAN17G0204 Fragaria x ananassa HOM05D000123 ORTHO05D000064 1.7e-58 230.7 325 45.5
FAN07G1179 Fragaria x ananassa HOM05D000123 ORTHO05D000064 6.6e-58 228.8 327 45.3
Cpa.g.sc157.44 Carica papaya HOM05D000123 ORTHO05D000064 8.6e-58 228.4 320 45.6
Gohir.A02G018600 Gossypium hirsutum HOM05D000123 ORTHO05D000064 1.5e-57 227.6 286 47.9
CANSAT78G2525 Cannabis sativa HOM05D000123 ORTHO05D000064 4.3e-57 226.1 328 46.3
CAN.G767.17 Capsicum annuum HOM05D000123 ORTHO05D000064 4.3e-57 226.1 323 44.0
Nitab4.5_0001574g0140 Nicotiana tabacum HOM05D000123 ORTHO05D000064 4.3e-57 226.1 323 43.7
RcHm_v2.0_Chr4g0413481 Rosa chinensis HOM05D000123 ORTHO05D000064 2.8e-56 223.4 323 45.2
Sed0020550 Sechium edule HOM05D000123 ORTHO05D000064 4.7e-56 222.6 323 44.0
TAR365G0203 Trochodendron aralioides HOM05D000123 ORTHO05D000064 4.7e-56 222.6 323 44.0
Nitab4.5_0008171g0010 Nicotiana tabacum HOM05D000123 ORTHO05D000064 1.8e-55 220.7 323 44.0
FAN12G2969 Fragaria x ananassa HOM05D000123 ORTHO05D000064 3.1e-55 219.9 323 44.0
arahy.Tifrunner.gnm1.ann1.XNB059 Arachis hypogaea HOM05D000123 ORTHO05D000064 5.2e-55 219.2 331 42.3
Solyc12g098520.2 Solanum lycopersicum HOM05D000123 ORTHO05D000064 8.9e-55 218.4 324 43.8
Gohir.D02G022000 Gossypium hirsutum HOM05D000123 ORTHO05D000064 1.2e-54 218.0 296 44.9
Gorai.005G027500 Gossypium raimondii HOM05D000123 ORTHO05D000064 1.2e-54 218.0 296 44.9
Peaxi162Scf00652g00018 Petunia axillaris HOM05D000123 ORTHO05D000064 1.5e-54 217.6 323 44.3
FAN22G0587 Fragaria x ananassa HOM05D000123 ORTHO05D000064 2.0e-54 217.2 300 46.3
Cc03_g08510 Coffea canephora HOM05D000123 ORTHO05D000064 2.6e-54 216.9 324 44.4
MELO3C006288.2 Cucumis melo HOM05D000123 ORTHO05D000064 2.6e-54 216.9 323 43.0
Sopen12g033300 Solanum pennellii HOM05D000123 ORTHO05D000064 3.4e-54 216.5 324 43.8
FvH4_4g13230 Fragaria vesca HOM05D000123 ORTHO05D000064 4.4e-54 216.1 323 43.7
SalBow3G3655 Salvia bowleyana HOM05D000123 ORTHO05D000064 9.9e-54 214.9 328 44.2
PGSC0003DMG400004662 Solanum tuberosum HOM05D000123 ORTHO05D000064 9.9e-54 214.9 324 43.2
CsaV3_3G010690 Cucumis sativus L. HOM05D000123 ORTHO05D000064 1.7e-53 214.2 323 42.7
vmacro15569 Vaccinium macrocarpon HOM05D000123 ORTHO05D000064 1.7e-53 214.2 323 44.3
ClCG05G003060 Citrullus lanatus HOM05D000123 ORTHO05D000064 2.2e-53 213.8 323 44.0
Rhsim02G0062200 Rhododendron simsii HOM05D000123 ORTHO05D000064 1.9e-52 210.7 323 44.6
Carub.0007s2846 Capsella rubella HOM05D000123 ORTHO05D000064 7.1e-52 208.8 330 40.9
Medtr8g083100 Medicago truncatula HOM05D000123 ORTHO05D000064 7.1e-52 208.8 330 43.3
CiPaw.01G116400 Carya illinoinensis HOM05D000123 ORTHO05D000064 2.3e-50 203.8 323 42.7
Nn3g20095 Nelumbo nucifera HOM05D000123 ORTHO05D000064 1.1e-49 201.4 323 41.2
MSTRG.21981 Avicennia marina HOM05D000123 ORTHO05D000064 1.9e-49 200.7 326 42.0
Aa31LG9G3590 Aethionema arabicum HOM05D000123 ORTHO05D000064 3.3e-49 199.9 326 40.5
CARHR219940 Cardamine hirsuta HOM05D000123 ORTHO05D000064 4.3e-49 199.5 332 38.9
PGR083G1962 Punica granatum HOM05D000123 ORTHO05D000064 9.6e-49 198.4 328 41.2
Gohir.A09G206700 Gossypium hirsutum HOM05D000123 ORTHO05D000064 1.6e-48 197.6 329 41.6
Oeu050712.1 Olea europaea HOM05D000123 ORTHO05D000064 1.6e-48 197.6 326 44.5
Gorai.006G224000 Gossypium raimondii HOM05D000123 ORTHO05D000064 2.8e-48 196.8 325 41.5
AL7G42480 Arabidopsis lyrata HOM05D000123 ORTHO05D000064 6.2e-48 195.7 324 39.5
Gohir.D09G200300 Gossypium hirsutum HOM05D000123 ORTHO05D000064 1.8e-47 194.1 327 41.0
AT4G13980 Arabidopsis thaliana HOM05D000123 ORTHO05D000064 3.1e-47 193.4 324 40.1
Lju912A2G57 Lonicera japonica HOM05D000123 ORTHO05D000064 3.1e-47 193.4 309 43.4
Sp7g11770 Schrenkiella parvula HOM05D000123 ORTHO05D000064 3.1e-47 193.4 324 38.0
ECA248G0539 Erigeron canadensis HOM05D000123 ORTHO05D000064 1.2e-46 191.4 323 41.8
Medtr2g100680 Medicago truncatula HOM05D000123 ORTHO05D000064 1.5e-46 191.0 315 41.3
THA.LOC104808691 Tarenaya hassleriana HOM05D000123 ORTHO05D000064 4.4e-46 189.5 300 41.0
Oeu049052.1 Olea europaea HOM05D000123 ORTHO05D000064 9.9e-46 188.3 322 43.8
A04p08160 Brassica napus HOM05D000123 ORTHO05D000064 1.3e-45 188.0 327 39.1
Duzib212G0765 Durio zibethinus HOM05D000123 ORTHO05D000064 2.9e-45 186.8 198 55.1
Thhalv10025090m.g Eutrema salsugineum HOM05D000123 ORTHO05D000064 5.4e-44 182.6 324 38.0
TAR636G0265 Trochodendron aralioides HOM05D000123 ORTHO05D000064 3.5e-43 179.9 351 39.3
BcaC02g09374 Brassica carinata HOM05D000123 ORTHO05D000064 4.6e-43 179.5 293 42.0
C04p41820 Brassica napus HOM05D000123 ORTHO05D000064 1.7e-42 177.6 288 41.0
BolC4t25765H Brassica oleracea HOM05D000123 ORTHO05D000064 1.7e-42 177.6 288 41.0
HanXRQChr01g0022131 Helianthus annuus HOM05D000123 ORTHO05D000064 3.0e-42 176.8 320 39.7
MBI07_g08881_MAGBIO Magnolia biondii HOM05D000123 ORTHO05D000064 3.9e-42 176.4 330 38.2
Hma1.2p1_0349F.1_g132040 Hydrangea macrophylla HOM05D000123 ORTHO05D000064 5.1e-42 176.0 193 52.3
ECA238G1966 Erigeron canadensis HOM05D000123 ORTHO05D000064 3.3e-41 173.3 325 38.8
BraA04t16506Z Brassica rapa HOM05D000123 ORTHO05D000064 5.6e-41 172.6 303 39.3
Lsat_1_v5_gn_1_70440 Lactuca sativa HOM05D000123 ORTHO05D000064 1.6e-40 171.0 330 39.7
VMungo1383G1332 Vigna mungo HOM05D000123 ORTHO05D000064 3.6e-40 169.9 345 37.7
BcaB02g08642 Brassica carinata HOM05D001582 ORTHO05D001598 6.2e-40 169.1 326 39.6
Migut.N00424 Erythranthe guttata HOM05D000123 ORTHO05D000064 1.4e-39 167.9 325 39.1
CiPaw.02G063200 Carya illinoinensis HOM05D000123 ORTHO05D000064 1.7e-37 161.0 213 45.1
Phvul.001G266300 Phaseolus vulgaris HOM05D000123 ORTHO05D000064 4.9e-37 159.5 339 36.3
Aqoxy2G03924 Aquilegia oxysepala HOM05D000123 ORTHO05D000064 8.4e-37 158.7 322 36.3
PSO017G2930 Papaver somniferum HOM05D000123 ORTHO05D000064 1.1e-36 158.3 325 36.9
HanXRQChr11g0344441 Helianthus annuus HOM05D000123 ORTHO05D000064 2.1e-35 154.1 319 38.9
ATR0561G008 Amborella trichopoda HOM05D000123 ORTHO05D000064 2.8e-32 143.7 342 36.5
PSO063G5338 Papaver somniferum HOM05D000123 ORTHO05D000064 1.1e-31 141.7 323 35.3
SGA_v2.0_scaffold93G28354 Striga asiatica HOM05D000123 ORTHO05D000064 4.0e-31 139.8 330 34.8
TPR.G25375 Trifolium pratense HOM05D000123 ORTHO05D000064 1.9e-28 131.0 320 35.0
Zm00001eb241300 Zea mays HOM05D000123 ORTHO05D000064 7.1e-28 129.0 334 32.3
Os02g0496100 Oryza sativa ssp. japonica HOM05D000123 ORTHO05D000064 1.0e-26 125.2 328 31.7
AUR62020886 Chenopodium quinoa HOM05D002044 ORTHO05D005000 1.6e-24 117.9 65 89.2
Medtr6g043060 Medicago truncatula HOM05D000123 ORTHO05D000064 2.0e-22 110.9 142 47.9
Medtr2g100670 Medicago truncatula HOM05D000123 ORTHO05D000064 1.9e-17 94.4 142 40.1
CDE06G2664 Ceratophyllum demersum HOM05D000123 ORTHO05D000064 1.1e-15 88.6 330 28.8
Medtr6g044440 Medicago truncatula HOM05D000123 ORTHO05D000064 9.0e-15 85.5 104 48.1
Medtr6g044350 Medicago truncatula HOM05D000123 ORTHO05D000064 2.5e-12 77.4 104 45.2
Medtr6g044340 Medicago truncatula HOM05D000123 ORTHO05D000064 1.0e-10 72.0 115 39.1
Medtr6g044430 Medicago truncatula HOM05D000123 ORTHO05D000064 1.1e-09 68.6 105 42.9
SEGI_30844 Sequoiadendron giganteum HOM05D000123 ORTHO05D000064 1.7e-08 64.7 343 24.8
Gohir.A08G221668 Gossypium hirsutum HOM05D000123 ORTHO05D000064 2.8e-08 63.9 95 38.9
Medtr6g055650 Medicago truncatula HOM05D000123 ORTHO05D000064 2.8e-08 63.9 123 37.4
MSTRG.26926 Avicennia marina HOM05D000123 ORTHO05D000064 3.7e-08 63.5 132 31.1
Duzib177G0888 Durio zibethinus HOM05D000123 ORTHO05D000064 3.7e-08 63.5 96 39.6
Dinv17251 Davidia involucrata HOM05D000123 ORTHO05D000064 6.3e-08 62.8 347 25.9
Lj3P886T13 Lonicera japonica HOM05D000123 ORTHO05D000064 8.2e-08 62.4 372 23.1
COL.COLO4_15231 Corchorus olitorius HOM05D000123 ORTHO05D000064 1.4e-07 61.6 335 25.7
Aqoxy3G02221 Aquilegia oxysepala HOM05D000123 ORTHO05D000064 1.8e-07 61.2 325 24.9
Gorai.003G053300 Gossypium raimondii HOM05D000123 ORTHO05D000064 1.8e-07 61.2 340 26.5
Nn1g00179 Nelumbo nucifera HOM05D000123 ORTHO05D000064 1.8e-07 61.2 351 25.6
Gorai.004G257000 Gossypium raimondii HOM05D000123 ORTHO05D000064 4.1e-07 60.1 340 26.2
Gohir.D08G241700 Gossypium hirsutum HOM05D000123 ORTHO05D000064 5.3e-07 59.7 340 26.5
Medtr6g044500 Medicago truncatula HOM05D000123 ORTHO05D000064 6.9e-07 59.3 73 49.3
Oeu038090.1 Olea europaea HOM05D000123 ORTHO05D000064 6.9e-07 59.3 328 23.8
SalBow4G1840 Salvia bowleyana HOM05D000123 ORTHO05D000064 6.9e-07 59.3 132 31.1
SalBow4G3227 Salvia bowleyana HOM05D000123 ORTHO05D000064 6.9e-07 59.3 132 31.1
RcHm_v2.0_Chr5g0027071 Rosa chinensis HOM05D000123 ORTHO05D000064 9.1e-07 58.9 94 34.0
PGSC0003DMG400016270 Solanum tuberosum HOM05D000123 ORTHO05D000064 9.1e-07 58.9 168 28.0
HPP92_005384 Vanilla planifolia HOM05D000123 ORTHO05D000064 9.1e-07 58.9 328 26.2
Migut.F00088 Erythranthe guttata HOM05D000123 ORTHO05D000064 1.2e-06 58.5 137 29.9
Carub.0003s0212 Capsella rubella HOM05D000123 ORTHO05D000064 1.5e-06 58.2 253 24.1
Eucgr.A02976 Eucalyptus grandis HOM05D000123 ORTHO05D000064 1.5e-06 58.2 343 23.9
FAN21G0231 Fragaria x ananassa HOM05D000123 ORTHO05D000064 2.0e-06 57.8 87 35.6
Rhsim09G0213400 Rhododendron simsii HOM05D000123 ORTHO05D000064 2.0e-06 57.8 339 26.0
Aa31LG6G490 Aethionema arabicum HOM05D001718 ORTHO05D008006 2.6e-06 57.4 82 39.0
CSS0047215 Camellia sinensis var. sinensis HOM05D000123 ORTHO05D000064 2.6e-06 57.4 132 30.3
CARHR077010 Cardamine hirsuta HOM05D000123 ORTHO05D000064 2.6e-06 57.4 85 35.3
Duzib128G1979 Durio zibethinus HOM05D000123 ORTHO05D000064 2.6e-06 57.4 96 36.5
ATR0118G016 Amborella trichopoda HOM05D000123 ORTHO05D000064 3.4e-06 57.0 89 33.7
ECA247G3701 Erigeron canadensis HOM05D000123 ORTHO05D000064 3.4e-06 57.0 88 35.2
TWI15G0446 Tripterygium wilfordii HOM05D000123 ORTHO05D000064 3.4e-06 57.0 162 29.0
Aa31LG11G12760 Aethionema arabicum HOM05D000123 ORTHO05D000064 4.5e-06 56.6 151 29.1
TAR629G2768 Trochodendron aralioides HOM05D000123 ORTHO05D000064 5.9e-06 56.2 326 23.9
HPP92_014661 Vanilla planifolia HOM05D000123 ORTHO05D000064 5.9e-06 56.2 98 32.7
TAR636G2714 Trochodendron aralioides HOM05D000123 ORTHO05D000064 7.7e-06 55.8 347 24.2


User provided reference genes

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