Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62029500 Chenopodium quinoa HOM05D005052 ORTHO05D006226 5.2e-257 890.6 455 100.0
AUR62003338 Chenopodium quinoa HOM05D005052 ORTHO05D006226 2.8e-247 858.2 455 97.4
Hund16503 Selenicereus undatus HOM05D005052 ORTHO05D006226 3.9e-204 714.9 458 80.8
Sc03g0003700 Simmondsia chinensis HOM05D005052 ORTHO05D006226 3.9e-196 688.3 454 78.4
RcHm_v2.0_Chr2g0099021 Rosa chinensis HOM05D005052 ORTHO05D006226 1.8e-193 679.5 455 76.9
QL06p051082 Quercus lobata HOM05D005052 ORTHO05D006226 5.2e-193 677.9 464 76.1
FvH4_1g11430 Fragaria vesca HOM05D005052 ORTHO05D006226 2.1e-189 666.0 455 75.2
FAN28G0876 Fragaria x ananassa HOM05D005052 ORTHO05D006226 4.6e-189 664.8 455 74.7
MD15G1242600 Malus domestica HOM05D005052 ORTHO05D006226 7.8e-189 664.1 469 74.4
GSVIVG01018732001 Vitis vinifera HOM05D005052 ORTHO05D006226 1.0e-188 663.7 467 74.3
Actinidia22954 Actinidia chinensis HOM05D005052 ORTHO05D006226 6.6e-188 661.0 369 88.1
Nitab4.5_0008943g0020 Nicotiana tabacum HOM05D005052 ORTHO05D006226 8.7e-188 660.6 408 81.6
FAN19G0738 Fragaria x ananassa HOM05D005052 ORTHO05D006226 1.9e-187 659.4 455 74.5
TWI53G1960 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 1.9e-187 659.4 454 77.1
vmacro18426 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 2.5e-187 659.1 453 75.3
FAN23G2381 Fragaria x ananassa HOM05D005052 ORTHO05D006226 3.3e-187 658.7 455 74.5
Cfa007001 Carpinus fangiana HOM05D005052 ORTHO05D006226 4.3e-187 658.3 460 76.1
CiPaw.07G061100 Carya illinoinensis HOM05D005052 ORTHO05D006226 5.6e-187 657.9 461 74.8
COL.COLO4_22462 Corchorus olitorius HOM05D005052 ORTHO05D006226 7.3e-187 657.5 462 75.8
Atru.chr3.855 Acer truncatum HOM05D005052 ORTHO05D006226 1.6e-186 656.4 403 81.9
Prupe.7G171600 Prunus persica HOM05D005052 ORTHO05D006226 1.6e-186 656.4 469 73.8
Nitab4.5_0001892g0080 Nicotiana tabacum HOM05D005052 ORTHO05D006226 3.6e-186 655.2 408 80.9
Dinv40116 Davidia involucrata HOM05D005052 ORTHO05D006226 6.2e-186 654.4 466 74.5
Eucgr.J02467 Eucalyptus grandis HOM05D005052 ORTHO05D006226 8.1e-186 654.1 462 74.5
FAN26G3360 Fragaria x ananassa HOM05D005052 ORTHO05D006226 8.1e-186 654.1 468 73.1
CANSAT25G2560 Cannabis sativa HOM05D005052 ORTHO05D006226 3.1e-185 652.1 459 74.9
Nn5g28565 Nelumbo nucifera HOM05D005052 ORTHO05D006226 3.1e-185 652.1 466 74.7
Cpa.g.sc6.286 Carica papaya HOM05D005052 ORTHO05D006226 4.0e-185 651.7 431 77.5
ECA240G3065 Erigeron canadensis HOM05D005052 ORTHO05D006226 4.0e-185 651.7 429 77.4
Nn1g06262 Nelumbo nucifera HOM05D005052 ORTHO05D006226 4.0e-185 651.7 465 74.8
MELO3C013755.2 Cucumis melo HOM05D005052 ORTHO05D006226 5.3e-185 651.4 459 75.4
Oeu048477.1 Olea europaea HOM05D005052 ORTHO05D006226 9.0e-185 650.6 418 78.9
CsaV3_3G000670 Cucumis sativus L. HOM05D005052 ORTHO05D006226 1.2e-184 650.2 459 75.4
Duzib147G0491 Durio zibethinus HOM05D005052 ORTHO05D006226 1.2e-184 650.2 457 74.4
HanXRQChr13g0424561 Helianthus annuus HOM05D005052 ORTHO05D006226 1.2e-184 650.2 456 74.3
Ca_24920_v3 Cicer arietinum L. HOM05D005052 ORTHO05D006226 2.0e-184 649.4 399 82.2
Haze_03731 Corylus avellana HOM05D005052 ORTHO05D006226 2.0e-184 649.4 474 73.8
Gohir.D12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 3.4e-184 648.7 460 74.6
Medtr5g022580 Medicago truncatula HOM05D005052 ORTHO05D006226 3.4e-184 648.7 450 75.1
TPR.G10542 Trifolium pratense HOM05D005052 ORTHO05D006226 4.5e-184 648.3 393 81.9
CiPaw.08G130500 Carya illinoinensis HOM05D005052 ORTHO05D006226 5.8e-184 647.9 462 73.8
Gohir.A12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 5.8e-184 647.9 460 74.6
Sabra05G0090900 Salix brachista HOM05D005052 ORTHO05D006226 5.8e-184 647.9 455 73.6
PSO541G6199 Papaver somniferum HOM05D005052 ORTHO05D006226 7.6e-184 647.5 443 75.4
Thecc.01G014600 Theobroma cacao HOM05D005052 ORTHO05D006226 7.6e-184 647.5 461 74.4
TAR381G1626 Trochodendron aralioides HOM05D005052 ORTHO05D006226 7.6e-184 647.5 465 74.4
VMungo1215G2918 Vigna mungo HOM05D005052 ORTHO05D006226 2.9e-183 645.6 455 74.7
arahy.Tifrunner.gnm1.ann1.1KVD1S Arachis hypogaea HOM05D005052 ORTHO05D006226 4.9e-183 644.8 445 76.2
arahy.Tifrunner.gnm1.ann1.PYN71E Arachis hypogaea HOM05D005052 ORTHO05D006226 4.9e-183 644.8 445 76.2
ClCG10G000590 Citrullus lanatus HOM05D005052 ORTHO05D006226 6.4e-183 644.4 459 74.9
Gorai.008G062200 Gossypium raimondii HOM05D005052 ORTHO05D006226 6.4e-183 644.4 461 74.4
Sed0003793 Sechium edule HOM05D005052 ORTHO05D006226 6.4e-183 644.4 394 82.7
Rhsim08G0032100 Rhododendron simsii HOM05D005052 ORTHO05D006226 8.4e-183 644.0 393 81.2
BcaB04g20124 Brassica carinata HOM05D005052 ORTHO05D006226 1.1e-182 643.7 410 79.3
CAN.G1274.31 Capsicum annuum HOM05D005052 ORTHO05D006226 1.9e-182 642.9 413 78.5
Potri.005G110900 Populus trichocarpa HOM05D005052 ORTHO05D006226 2.4e-182 642.5 455 74.1
Lj2g0011110 Lotus japonicus HOM05D005052 ORTHO05D006226 3.2e-182 642.1 397 82.1
PSO675G6089 Papaver somniferum HOM05D005052 ORTHO05D006226 3.2e-182 642.1 443 74.9
PGR102G0465 Punica granatum HOM05D005052 ORTHO05D006226 3.2e-182 642.1 455 73.6
SalBow3G4284 Salvia bowleyana HOM05D005052 ORTHO05D006226 7.1e-182 641.0 457 73.7
Psat2g153160 Pisum sativum HOM05D005052 ORTHO05D006226 9.3e-182 640.6 398 81.4
Lalb_Chr05g0212261 Lupinus albus HOM05D005052 ORTHO05D006226 1.6e-181 639.8 395 82.0
Peaxi162Scf00328g00523 Petunia axillaris HOM05D005052 ORTHO05D006226 1.6e-181 639.8 375 84.0
Sopen02g028370 Solanum pennellii HOM05D005052 ORTHO05D006226 2.1e-181 639.4 375 83.7
Lj4A222T51 Lonicera japonica HOM05D005052 ORTHO05D006226 2.7e-181 639.0 421 78.6
TWI09G1579 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 2.7e-181 639.0 434 76.7
Cc07_g11060 Coffea canephora HOM05D005052 ORTHO05D006226 3.5e-181 638.6 395 80.3
Lalb_Chr09g0321611 Lupinus albus HOM05D005052 ORTHO05D006226 3.5e-181 638.6 391 82.1
Solyc02g083590.3 Solanum lycopersicum HOM05D005052 ORTHO05D006226 4.6e-181 638.3 375 83.7
SGA_v2.0_scaffold94G28549 Striga asiatica HOM05D005052 ORTHO05D006226 6.0e-181 637.9 372 84.4
BolC9t54093H Brassica oleracea HOM05D005052 ORTHO05D006226 7.9e-181 637.5 414 78.3
Migut.C00533 Erythranthe guttata HOM05D005052 ORTHO05D006226 7.9e-181 637.5 458 73.1
Thhalv10004219m.g Eutrema salsugineum HOM05D005052 ORTHO05D006226 7.9e-181 637.5 419 78.0
THA.LOC104821339 Tarenaya hassleriana HOM05D005052 ORTHO05D006226 1.3e-180 636.7 398 79.9
Glyma.11G078700 Glycine max HOM05D005052 ORTHO05D006226 1.8e-180 636.3 397 81.1
Glyma.01G164300 Glycine max HOM05D005052 ORTHO05D006226 3.0e-180 635.6 371 85.2
PGSC0003DMG400003582 Solanum tuberosum HOM05D005052 ORTHO05D006226 3.0e-180 635.6 375 83.5
BraA09t36659Z Brassica rapa HOM05D005052 ORTHO05D006226 5.1e-180 634.8 454 73.6
DCAR_022909 Daucus carota HOM05D005052 ORTHO05D006226 5.1e-180 634.8 372 84.7
MBI05_g23388_MAGBIO Magnolia biondii HOM05D005052 ORTHO05D006226 5.1e-180 634.8 454 73.3
A09p10150 Brassica napus HOM05D005052 ORTHO05D006226 8.7e-180 634.0 455 73.2
MSTRG.2728 Avicennia marina HOM05D005052 ORTHO05D006226 1.1e-179 633.6 399 78.7
Gohir.D11G180500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 1.1e-179 633.6 370 85.1
Phvul.002G106700 Phaseolus vulgaris HOM05D005052 ORTHO05D006226 1.1e-179 633.6 457 73.7
BcaC04g23113 Brassica carinata HOM05D005052 ORTHO05D006226 1.5e-179 633.3 457 72.6
C09p12030 Brassica napus HOM05D005052 ORTHO05D006226 1.5e-179 633.3 457 72.6
Aa31LG1G14600 Aethionema arabicum HOM05D005052 ORTHO05D006226 1.9e-179 632.9 366 84.2
AL8G45470 Arabidopsis lyrata HOM05D005052 ORTHO05D006226 2.5e-179 632.5 454 73.8
AT5G66120 Arabidopsis thaliana HOM05D005052 ORTHO05D006226 3.3e-179 632.1 443 74.7
CARHR281630 Cardamine hirsuta HOM05D005052 ORTHO05D006226 5.6e-179 631.3 442 74.4
ATR0712G043 Amborella trichopoda HOM05D005052 ORTHO05D006226 9.6e-179 630.6 462 71.4
Sp2g30570 Schrenkiella parvula HOM05D005052 ORTHO05D006226 9.6e-179 630.6 366 84.4
Gorai.007G192400 Gossypium raimondii HOM05D005052 ORTHO05D006226 1.3e-178 630.2 451 73.8
Os09g0539100 Oryza sativa ssp. japonica HOM05D005052 ORTHO05D006226 2.8e-178 629.0 366 84.4
Zm00001eb103800 Zea mays HOM05D005052 ORTHO05D006226 1.4e-177 626.7 457 73.5
Carub.0008s2837 Capsella rubella HOM05D005052 ORTHO05D006226 2.4e-177 625.9 454 73.6
Aqoxy4G02022 Aquilegia oxysepala HOM05D005052 ORTHO05D006226 2.2e-175 619.4 366 83.3
vmacro22193 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 2.4e-174 615.9 465 69.5
EL10Ac6g15523 Beta vulgaris HOM05D005052 ORTHO05D006226 4.6e-173 611.7 507 66.3
Gohir.A11G173500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 4.6e-173 611.7 430 75.1
HPP92_025914 Vanilla planifolia HOM05D005052 ORTHO05D006226 6.7e-172 607.8 454 68.7
HPP92_025909 Vanilla planifolia HOM05D005052 ORTHO05D006226 1.6e-170 603.2 453 67.5
Pp3c13_24150 Physcomitrium patens HOM05D005052 ORTHO05D006226 6.5e-167 591.3 463 66.5
SMO228G0049 Selaginella moellendorffii HOM05D005052 ORTHO05D006226 1.1e-166 590.5 364 78.3
CSS0012363 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 2.1e-165 586.3 328 88.1
AagrBONN_evm.TU.Sc2ySwM_340.387 Anthoceros agrestis HOM05D005052 ORTHO05D006226 2.3e-164 582.8 393 73.3
Ciclev10025711m.g Citrus clementina HOM05D005052 ORTHO05D006226 6.3e-162 574.7 451 68.5
Mapoly0031s0094 Marchantia polymorpha HOM05D005052 ORTHO05D006226 1.1e-161 573.9 364 74.7
Zm00001eb331970 Zea mays HOM05D005052 ORTHO05D006226 8.7e-156 554.3 363 77.7
Actinidia28717 Actinidia chinensis HOM05D005052 ORTHO05D006226 9.1e-153 544.3 457 66.5
Lsat_1_v5_gn_3_125660 Lactuca sativa HOM05D005052 ORTHO05D006226 1.0e-151 540.8 442 66.5
CBR_g10969 Chara braunii HOM05D005052 ORTHO05D006226 8.5e-151 537.7 416 65.4
DCAR_004732 Daucus carota HOM05D005052 ORTHO05D006226 1.4e-150 537.0 381 71.4
Ah.03g149130 Amaranthus hybridus HOM05D005052 ORTHO05D006226 2.8e-146 522.7 344 82.0
Actinidia17421 Actinidia chinensis HOM05D005052 ORTHO05D006226 5.3e-145 518.5 287 88.9
Cre08.g368950 Chlamydomonas reinhardtii HOM05D005052 ORTHO05D006226 2.9e-143 512.7 362 69.3
MCO01G625 Micromonas commoda HOM05D005052 ORTHO05D006226 1.8e-140 503.4 364 64.8
CDE04G1415 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 3.7e-138 495.7 287 84.3
PRCOL_00000314 Prasinoderma coloniale HOM05D005052 ORTHO05D006226 2.7e-128 463.0 363 62.5
Hma1.2p1_0315F.1_g122330 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 2.2e-127 459.9 375 65.1
Manes.02G107200 Manihot esculenta HOM05D005052 ORTHO05D006226 9.4e-126 454.5 347 71.2
SEGI_14262 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 2.3e-119 433.3 288 74.3
Dinv33661 Davidia involucrata HOM05D005052 ORTHO05D006226 2.7e-112 409.8 233 86.3
CDE02G2775 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 1.8e-108 397.1 305 66.9
Hma1.2p1_2620F.1_g325580 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 1.1e-100 371.3 442 51.1
SEGI_08539 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.9e-94 350.5 224 74.6
CDE02G1558 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 3.9e-87 326.2 256 67.6
Lsat_1_v5_gn_0_46241 Lactuca sativa HOM05D005052 ORTHO05D006226 2.4e-81 307.0 318 48.1
SGA_v2.0_scaffold273G46395 Striga asiatica HOM05D005052 ORTHO05D006226 1.7e-79 300.8 193 73.1
RcHm_v2.0_Chr2g0099011 Rosa chinensis HOM05D005052 ORTHO05D006226 2.4e-73 280.4 246 61.0
TPR.G6592 Trifolium pratense HOM05D005052 ORTHO05D006226 3.2e-73 280.0 273 57.5
unitig_699.g19702 Utricularia gibba HOM05D005052 ORTHO05D006226 7.1e-73 278.9 161 84.5
Haze_27270 Corylus avellana HOM05D005052 ORTHO05D006226 4.3e-70 269.6 355 44.5
Dinv33662 Davidia involucrata HOM05D005052 ORTHO05D006226 9.3e-57 225.3 215 59.5
Cfa024476 Carpinus fangiana HOM05D003566 ORTHO05D126353 1.3e-55 221.5 346 40.5
Rhsim07G0143100 Rhododendron simsii HOM05D005052 ORTHO05D006226 2.5e-46 190.7 184 60.9
unitig_699.g19703 Utricularia gibba HOM05D005052 ORTHO05D006226 2.4e-44 184.1 183 56.8
SEGI_40904 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 2.1e-40 171.0 113 71.7
Ah.03g149140 Amaranthus hybridus HOM05D000441 ORTHO05D000340 5.1e-31 139.8 77 87.0
SEGI_17140 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.1e-25 122.1 83 67.5
SEGI_34573 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.1e-25 122.1 83 67.5
MD02G1126200 Malus domestica HOM05D005052 ORTHO05D006226 2.1e-24 117.9 129 52.7
MD14G1099300 Malus domestica HOM05D005052 ORTHO05D006226 2.1e-24 117.9 129 52.7
Rhsim07G0135500 Rhododendron simsii HOM05D005052 ORTHO05D006226 5.7e-22 109.8 71 73.2
DCAR_004721 Daucus carota HOM05D005052 ORTHO05D006226 4.5e-19 100.1 113 50.4
SEGI_22853 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.7e-18 98.2 69 65.2
CDE04G1456 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 1.5e-17 95.1 85 60.0
Rhsim07G0135600 Rhododendron simsii HOM05D005052 ORTHO05D339393 1.1e-09 68.9 37 83.8
CSS0040013 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 8.8e-07 59.3 34 76.5


User provided reference genes

Program Settings