Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62029449 Chenopodium quinoa HOM05D001343 ORTHO05D007223 0.0e+00 1089.7 794 100.0
AUR62003379 Chenopodium quinoa HOM05D001343 ORTHO05D007223 3.1e-265 918.7 794 84.8
EL10Ac6g15468 Beta vulgaris HOM05D001343 ORTHO05D007223 1.7e-231 806.6 808 72.3
Ah.03g148390 Amaranthus hybridus HOM05D001343 ORTHO05D007223 6.7e-212 741.5 796 71.5
Hund03615 Selenicereus undatus HOM05D001343 ORTHO05D007223 1.3e-191 674.1 797 62.9
Dinv08526 Davidia involucrata HOM05D001343 ORTHO05D007223 6.0e-176 622.1 800 57.9
Sc16g0001690 Simmondsia chinensis HOM05D001343 ORTHO05D007223 3.5e-160 569.7 793 62.4
Hma1.2p1_0300F.1_g118160 Hydrangea macrophylla HOM05D001343 ORTHO05D007223 7.1e-153 545.4 767 54.9
QL06p052741 Quercus lobata HOM05D001343 ORTHO05D007223 8.1e-149 531.9 832 52.8
MD15G1233300 Malus domestica HOM05D001343 ORTHO05D007223 4.5e-147 526.2 790 51.0
Actinidia17384 Actinidia chinensis HOM05D001343 ORTHO05D007223 9.9e-147 525.0 800 50.5
Lalb_Chr05g0211921 Lupinus albus HOM05D001343 ORTHO05D007223 3.5e-144 516.5 804 52.0
Duzib187G0329 Durio zibethinus HOM05D001343 ORTHO05D007223 7.9e-144 515.4 799 49.9
Gohir.A10G099100 Gossypium hirsutum HOM05D001343 ORTHO05D007223 1.8e-143 514.2 787 56.7
Duzib147G0638 Durio zibethinus HOM05D001343 ORTHO05D007223 5.1e-143 512.7 797 53.2
TAR381G1734 Trochodendron aralioides HOM05D001343 ORTHO05D007223 5.1e-143 512.7 799 51.2
CANSAT25G0854 Cannabis sativa HOM05D001343 ORTHO05D007223 1.9e-142 510.8 742 53.9
CANSAT25G1453 Cannabis sativa HOM05D001343 ORTHO05D007223 2.5e-142 510.4 742 53.9
Prupe.7G179600 Prunus persica HOM05D001343 ORTHO05D007223 7.4e-142 508.8 786 53.4
Sabra05G0082500 Salix brachista HOM05D001343 ORTHO05D007223 9.0e-140 501.9 790 51.6
GSVIVG01003839001 Vitis vinifera HOM05D001343 ORTHO05D007223 2.0e-139 500.7 738 52.4
Potri.005G099800 Populus trichocarpa HOM05D001343 ORTHO05D007223 4.5e-139 499.6 790 50.5
Atru.chr3.956 Acer truncatum HOM05D001343 ORTHO05D007223 8.4e-138 495.4 768 48.8
CiPaw.07G004100 Carya illinoinensis HOM05D001343 ORTHO05D007223 8.4e-138 495.4 801 52.7
TWI09G1271 Tripterygium wilfordii HOM05D001343 ORTHO05D007223 1.4e-137 494.6 794 51.3
Thecc.01G007100 Theobroma cacao HOM05D001343 ORTHO05D007223 1.9e-137 494.2 798 55.3
Nitab4.5_0000702g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 6.0e-136 489.2 796 50.1
Aqoxy5G01035 Aquilegia oxysepala HOM05D001343 ORTHO05D007223 1.8e-135 487.6 765 50.2
MD02G1119300 Malus domestica HOM05D001343 ORTHO05D007223 3.0e-135 486.9 790 51.3
Haze_03675 Corylus avellana HOM05D001343 ORTHO05D007223 5.1e-135 486.1 810 51.6
Sed0023593 Sechium edule HOM05D001343 ORTHO05D007223 1.1e-134 485.0 800 50.4
Gohir.D10G089000 Gossypium hirsutum HOM05D001343 ORTHO05D007223 1.5e-134 484.6 787 55.5
Gorai.011G097900 Gossypium raimondii HOM05D001343 ORTHO05D007223 2.5e-134 483.8 787 55.4
Peaxi162Scf01446g00025 Petunia axillaris HOM05D001343 ORTHO05D007223 3.7e-133 479.9 813 49.2
CsaV3_3G000380 Cucumis sativus L. HOM05D001343 ORTHO05D007223 6.2e-133 479.2 804 50.7
FAN23G1852 Fragaria x ananassa HOM05D001343 ORTHO05D007223 1.1e-132 478.4 764 53.8
PSO210G1702 Papaver somniferum HOM05D001343 ORTHO05D007223 5.3e-132 476.1 764 51.8
Glyma.01G159900 Glycine max HOM05D001343 ORTHO05D007223 1.3e-130 471.5 795 54.6
HanXRQChr14g0442391 Helianthus annuus HOM05D001343 ORTHO05D007223 8.4e-130 468.8 792 49.6
Phvul.002G114800 Phaseolus vulgaris HOM05D001343 ORTHO05D007223 1.9e-129 467.6 794 47.5
THA.LOC104826465 Tarenaya hassleriana HOM05D001343 ORTHO05D007223 1.9e-129 467.6 744 52.4
Actinidia22910 Actinidia chinensis HOM05D001343 ORTHO05D007223 3.5e-128 463.4 798 52.4
SGA_v2.0_scaffold12G05990 Striga asiatica HOM05D001343 ORTHO05D007223 4.6e-128 463.0 794 45.2
ECA238G2213 Erigeron canadensis HOM05D001343 ORTHO05D007223 1.0e-127 461.8 812 48.0
TPR.G25095 Trifolium pratense HOM05D001343 ORTHO05D007223 1.8e-127 461.1 808 52.7
ClCG10G000340 Citrullus lanatus HOM05D001343 ORTHO05D007223 2.3e-127 460.7 812 49.4
Lsat_1_v5_gn_2_74420 Lactuca sativa HOM05D001343 ORTHO05D007223 3.9e-127 459.9 765 56.6
FvH4_1g10521 Fragaria vesca HOM05D001343 ORTHO05D007223 1.9e-126 457.6 767 52.4
BcaB04g20130 Brassica carinata HOM05D001343 ORTHO05D002008 8.2e-125 452.2 767 49.3
QL06p053829 Quercus lobata HOM05D001343 ORTHO05D007223 8.2e-125 452.2 798 51.5
PGR083G0487 Punica granatum HOM05D001343 ORTHO05D007223 2.4e-124 450.7 786 49.7
MSTRG.15594 Avicennia marina HOM05D001343 ORTHO05D007223 5.3e-124 449.5 797 49.8
Cpa.g.sc55.186 Carica papaya HOM05D001343 ORTHO05D007223 6.9e-124 449.1 799 49.9
FAN19G1061 Fragaria x ananassa HOM05D001343 ORTHO05D007223 1.5e-123 448.0 768 52.0
CSS0043948 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D007223 1.0e-122 445.3 790 51.8
FAN28G2189 Fragaria x ananassa HOM05D001343 ORTHO05D007223 5.0e-122 443.0 764 51.8
PSO170G3735 Papaver somniferum HOM05D001343 ORTHO05D007223 6.5e-122 442.6 763 51.1
Dinv40173 Davidia involucrata HOM05D001343 ORTHO05D007223 7.2e-121 439.1 510 52.9
AT5G66030 Arabidopsis thaliana HOM05D001343 ORTHO05D007223 9.3e-121 438.7 796 48.5
Manes.02G112700 Manihot esculenta HOM05D001343 ORTHO05D007223 2.7e-120 437.2 802 50.6
Atru.chr3.968 Acer truncatum HOM05D001343 ORTHO05D007223 1.4e-119 434.9 766 49.2
Nitab4.5_0002967g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 3.0e-119 433.7 796 51.4
COL.COLO4_22537 Corchorus olitorius HOM05D001343 ORTHO05D007223 1.5e-118 431.4 799 46.4
MELO3C013733.2 Cucumis melo HOM05D001343 ORTHO05D007223 3.3e-118 430.3 810 48.0
Thhalv10003686m.g Eutrema salsugineum HOM05D001343 ORTHO05D007223 4.3e-118 429.9 755 49.8
CAN.G890.76 Capsicum annuum HOM05D001343 ORTHO05D007223 1.4e-116 424.9 796 44.7
AL8G45590 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 7.2e-113 412.5 792 48.4
vmacro20524 Vaccinium macrocarpon HOM05D001343 ORTHO05D007223 2.1e-112 411.0 766 46.5
Nn5g30956 Nelumbo nucifera HOM05D001343 ORTHO05D007223 1.8e-111 407.9 764 45.8
A09p10220 Brassica napus HOM05D001343 ORTHO05D002008 5.1e-111 406.4 721 51.0
Zm00001eb104860 Zea mays HOM05D001343 ORTHO05D007223 8.8e-111 405.6 744 45.2
BraA09t36667Z Brassica rapa HOM05D001343 ORTHO05D002008 1.5e-110 404.8 740 49.9
ATR0661G538 Amborella trichopoda HOM05D001343 ORTHO05D007223 4.4e-110 403.3 757 44.8
C09p12110 Brassica napus HOM05D001343 ORTHO05D002008 7.4e-110 402.5 738 51.2
BolC9t54101H Brassica oleracea HOM05D001343 ORTHO05D002008 7.4e-110 402.5 745 49.8
BcaC04g23105 Brassica carinata HOM05D001343 ORTHO05D002008 9.7e-110 402.1 738 51.2
Lj2g0004784 Lotus japonicus HOM05D001343 ORTHO05D007223 4.8e-109 399.8 809 45.6
Ciclev10024922m.g Citrus clementina HOM05D001343 ORTHO05D007223 6.3e-109 399.4 795 43.6
Sp2g30660 Schrenkiella parvula HOM05D001343 ORTHO05D007223 2.6e-107 394.0 761 48.9
SalBow5G5069 Salvia bowleyana HOM05D001343 ORTHO05D007223 9.4e-105 385.6 858 44.5
Carub.0008s2848 Capsella rubella HOM05D001343 ORTHO05D007223 1.2e-104 385.2 757 42.9
Solyc02g082840.3 Solanum lycopersicum HOM05D001343 ORTHO05D007223 2.3e-103 380.9 796 43.6
arahy.Tifrunner.gnm1.ann1.AU9Y8G Arachis hypogaea HOM05D001343 ORTHO05D007223 2.6e-102 377.5 809 45.5
arahy.Tifrunner.gnm1.ann1.SLQH96 Arachis hypogaea HOM05D001343 ORTHO05D007223 2.6e-102 377.5 809 45.5
Sopen02g027640 Solanum pennellii HOM05D001343 ORTHO05D007223 5.7e-102 376.3 796 43.0
Glyma.11G084200 Glycine max HOM05D001343 ORTHO05D007223 3.7e-101 373.6 794 48.2
Medtr5g023770 Medicago truncatula HOM05D001343 ORTHO05D007223 3.8e-98 363.6 779 45.8
Os07g0472500 Oryza sativa ssp. japonica HOM05D001343 ORTHO05D007223 9.4e-97 359.0 748 43.3
VMungo1215G1031 Vigna mungo HOM05D001343 ORTHO05D007223 3.6e-96 357.1 800 45.4
Cc07_g11650 Coffea canephora HOM05D001343 ORTHO05D007223 1.4e-95 355.1 807 48.5
Eucgr.J02528 Eucalyptus grandis HOM05D001343 ORTHO05D007223 3.1e-92 344.0 795 43.9
Migut.L00734 Erythranthe guttata HOM05D001343 ORTHO05D007223 4.1e-92 343.6 802 42.9
Ca_24963_v3 Cicer arietinum L. HOM05D001343 ORTHO05D007223 2.7e-88 330.9 827 43.5
HPP92_003502 Vanilla planifolia HOM05D001343 ORTHO05D007223 8.8e-87 325.9 768 40.4
DCAR_011583 Daucus carota HOM05D001343 ORTHO05D007223 1.4e-84 318.5 790 47.5
unitig_88.g27773 Utricularia gibba HOM05D001343 ORTHO05D007223 3.5e-83 313.9 759 41.0
Manes.01G153700 Manihot esculenta HOM05D001343 ORTHO05D007223 8.6e-82 309.3 579 45.6
Lj4A232G45 Lonicera japonica HOM05D001343 ORTHO05D007223 1.0e-74 285.8 763 42.3
Mapoly0179s0009 Marchantia polymorpha HOM05D001343 ORTHO05D007223 1.9e-73 281.6 734 32.4
CARHR281730 Cardamine hirsuta HOM05D001343 ORTHO05D007223 3.0e-71 274.2 420 46.2
SEGI_12448 Sequoiadendron giganteum HOM05D001343 ORTHO05D007223 1.5e-70 271.9 761 37.6
RcHm_v2.0_Chr2g0097461 Rosa chinensis HOM05D001343 ORTHO05D007223 7.5e-70 269.6 534 54.3
RcHm_v2.0_Chr2g0097581 Rosa chinensis HOM05D001343 ORTHO05D007223 6.0e-67 260.0 535 54.0
AagrBONN_evm.TU.Sc2ySwM_344.163 Anthoceros agrestis HOM05D001343 ORTHO05D007223 1.4e-63 248.8 561 36.9
Psat2g150520 Pisum sativum HOM05D001343 ORTHO05D007223 2.8e-56 224.6 530 50.2
Pp3c20_18210 Physcomitrium patens HOM05D001343 ORTHO05D007223 3.1e-55 221.1 737 28.9
Actinidia26548 Actinidia chinensis HOM05D001343 ORTHO05D007223 6.4e-53 213.4 208 62.0
CDE06G1375 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 1.1e-41 176.0 271 40.6
CDE07G1287 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 9.0e-39 166.4 225 47.6
CDE07G1064 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 2.0e-38 165.2 244 41.4
RcHm_v2.0_Chr2g0097451 Rosa chinensis HOM05D001343 ORTHO05D007223 4.9e-37 160.6 190 52.6
Migut.L00927 Erythranthe guttata HOM05D001343 ORTHO05D007223 1.6e-35 155.6 384 51.0
Pp3c23_9770 Physcomitrium patens HOM05D001343 ORTHO05D007223 9.6e-33 146.4 769 28.6
Psat2g150480 Pisum sativum HOM05D001343 ORTHO05D007223 7.6e-30 136.7 167 51.5
CBR_g34809 Chara braunii HOM05D000019 ORTHO05D000002 1.6e-27 129.0 339 34.2
Migut.L00811 Erythranthe guttata HOM05D001343 ORTHO05D007223 6.7e-26 123.6 130 55.4
Rhsim10G0198000 Rhododendron simsii HOM05D001343 ORTHO05D007223 6.9e-23 113.6 240 46.2
QL06p053793 Quercus lobata HOM05D001343 ORTHO05D007223 5.8e-22 110.5 135 53.3
Cpa.g.sc1414.4 Carica papaya HOM05D001343 ORTHO05D007223 2.2e-21 108.6 284 52.8
RcHm_v2.0_Chr6g0253501 Rosa chinensis HOM05D001343 ORTHO05D007223 8.4e-21 106.7 203 65.0
Aa31LG1G14520 Aethionema arabicum HOM05D001343 ORTHO05D007223 3.0e-18 98.2 128 46.1
Oeu032010.1 Olea europaea HOM05D001343 ORTHO05D007223 3.7e-16 91.3 153 44.4
arahy.Tifrunner.gnm1.ann1.9PSP05 Arachis hypogaea HOM05D001343 ORTHO05D007223 6.2e-16 90.5 163 41.7
AL472U10010 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 3.8e-13 81.3 144 34.7
RcHm_v2.0_Chr2g0097571 Rosa chinensis HOM05D001343 ORTHO05D007223 6.5e-13 80.5 123 45.5
arahy.Tifrunner.gnm1.ann1.T78FCF Arachis hypogaea HOM05D001343 ORTHO05D007223 1.0e-10 73.2 44 77.3
arahy.Tifrunner.gnm1.ann1.6P6C0I Arachis hypogaea HOM05D001343 ORTHO05D007223 3.0e-10 71.6 95 64.2
QL06p052753 Quercus lobata HOM05D003687 ORTHO05D007223 5.1e-10 70.9 43 81.4
Actinidia26547 Actinidia chinensis HOM05D001343 ORTHO05D007223 4.3e-09 67.8 59 66.1
CDE06G1191 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 4.3e-09 67.8 103 40.8


User provided reference genes

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