Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62029376 Chenopodium quinoa HOM05D000300 ORTHO05D008505 1.8e-54 215.7 113 100.0
AUR62034261 Chenopodium quinoa HOM05D000300 ORTHO05D008505 8.5e-52 206.8 113 97.3
THA.LOC104813391 Tarenaya hassleriana HOM05D000300 ORTHO05D008505 1.2e-37 159.8 108 78.7
Ah.04g164930 Amaranthus hybridus HOM05D000300 ORTHO05D008505 2.0e-37 159.1 100 85.0
Hund02219 Selenicereus undatus HOM05D000300 ORTHO05D008505 4.5e-37 157.9 104 81.7
Manes.03G111900 Manihot esculenta HOM05D000300 ORTHO05D008505 1.6e-34 149.4 108 73.1
Prupe.4G183600 Prunus persica HOM05D000300 ORTHO05D008505 1.6e-34 149.4 108 72.2
RcHm_v2.0_Chr5g0033901 Rosa chinensis HOM05D000300 ORTHO05D008505 1.6e-34 149.4 104 75.0
CiPaw.11G167900 Carya illinoinensis HOM05D000300 ORTHO05D008505 2.1e-34 149.1 108 73.1
Haze_09412 Corylus avellana HOM05D000300 ORTHO05D008505 2.1e-34 149.1 108 71.3
Potri.011G121000 Populus trichocarpa HOM05D000300 ORTHO05D008505 2.8e-34 148.7 108 72.2
Gohir.A04G028900 Gossypium hirsutum HOM05D000300 ORTHO05D008505 4.7e-34 147.9 108 73.1
Gohir.D05G358300 Gossypium hirsutum HOM05D000300 ORTHO05D008505 4.7e-34 147.9 108 73.1
MD11G1245300 Malus domestica HOM05D000300 ORTHO05D008505 6.1e-34 147.5 108 71.3
Duzib213G0972 Durio zibethinus HOM05D000300 ORTHO05D008505 8.0e-34 147.1 108 71.3
Gorai.009G390800 Gossypium raimondii HOM05D000300 ORTHO05D008505 1.0e-33 146.7 108 73.1
Ciclev10007647m.g Citrus clementina HOM05D000300 ORTHO05D000383 1.4e-33 146.4 108 72.2
Dinv04313 Davidia involucrata HOM05D000300 ORTHO05D008505 1.4e-33 146.4 108 70.4
Cc05_g12170 Coffea canephora HOM05D000300 ORTHO05D000383 2.3e-33 145.6 108 73.1
MD03G1225800 Malus domestica HOM05D000300 ORTHO05D008505 2.3e-33 145.6 108 70.4
Nn1g06576 Nelumbo nucifera HOM05D000300 ORTHO05D008505 6.8e-33 144.1 108 70.4
Rhsim06G0197200 Rhododendron simsii HOM05D000300 ORTHO05D008505 6.8e-33 144.1 108 70.4
CSS0002162 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D008505 8.8e-33 143.7 108 70.4
FvH4_3g20100 Fragaria vesca HOM05D000300 ORTHO05D008505 8.8e-33 143.7 104 72.1
FAN11G2262 Fragaria x ananassa HOM05D000300 ORTHO05D008505 8.8e-33 143.7 104 72.1
FAN16G2347 Fragaria x ananassa HOM05D000300 ORTHO05D008505 8.8e-33 143.7 104 72.1
Thecc.07G080900 Theobroma cacao HOM05D000300 ORTHO05D008505 8.8e-33 143.7 108 71.3
BcaB08g35739 Brassica carinata HOM05D000300 ORTHO05D008505 1.5e-32 142.9 105 72.4
QL08p020830 Quercus lobata HOM05D000300 ORTHO05D008505 1.5e-32 142.9 107 69.2
Atru.chr2.2664 Acer truncatum HOM05D000300 ORTHO05D008505 2.0e-32 142.5 108 70.4
Glyma.13G278100 Glycine max HOM05D000300 ORTHO05D008505 2.0e-32 142.5 108 67.6
SGA_v2.0_scaffold34G13828 Striga asiatica HOM05D000300 ORTHO05D008505 2.0e-32 142.5 108 70.4
VMungo1080G0699 Vigna mungo HOM05D000300 ORTHO05D008505 2.0e-32 142.5 108 68.5
Sabra11G0105000 Salix brachista HOM05D000300 ORTHO05D008505 2.6e-32 142.1 109 71.6
vmacro11851 Vaccinium macrocarpon HOM05D000300 ORTHO05D008505 2.6e-32 142.1 108 70.4
Thhalv10013922m.g Eutrema salsugineum HOM05D000300 ORTHO05D008505 3.4e-32 141.7 105 71.4
Glyma.12G223300 Glycine max HOM05D000300 ORTHO05D008505 3.4e-32 141.7 108 67.6
MSTRG.6839 Avicennia marina HOM05D000300 ORTHO05D008505 4.4e-32 141.4 108 68.5
FAN21G2789 Fragaria x ananassa HOM05D000300 ORTHO05D008505 4.4e-32 141.4 104 71.2
Sp6g15870 Schrenkiella parvula HOM05D000300 ORTHO05D008505 4.4e-32 141.4 105 70.5
Oeu060546.1 Olea europaea HOM05D000300 ORTHO05D008505 5.7e-32 141.0 108 69.4
Phvul.005G071500 Phaseolus vulgaris HOM05D000300 ORTHO05D008505 5.7e-32 141.0 108 67.6
Aqoxy1G02483 Aquilegia oxysepala HOM05D000300 ORTHO05D008505 7.5e-32 140.6 108 68.5
BcaC04g20418 Brassica carinata HOM05D000300 ORTHO05D008505 9.8e-32 140.2 105 70.5
A10p11170 Brassica napus HOM05D000300 ORTHO05D008505 9.8e-32 140.2 105 70.5
C09p43740 Brassica napus HOM05D000300 ORTHO05D008505 9.8e-32 140.2 105 70.5
BolC9t57259H Brassica oleracea HOM05D000300 ORTHO05D008505 9.8e-32 140.2 105 70.5
BraA10t43209Z Brassica rapa HOM05D000300 ORTHO05D008505 9.8e-32 140.2 105 70.5
CANSAT56G2812 Cannabis sativa HOM05D000300 ORTHO05D008505 9.8e-32 140.2 108 69.4
Lj3g0005060 Lotus japonicus HOM05D000300 ORTHO05D008505 1.3e-31 139.8 108 67.6
Medtr2g079460 Medicago truncatula HOM05D000300 ORTHO05D008505 1.3e-31 139.8 108 67.6
PGSC0003DMG400015358 Solanum tuberosum HOM05D000300 ORTHO05D008505 1.7e-31 139.4 108 66.7
Carub.0008s1409 Capsella rubella HOM05D000300 ORTHO05D008505 2.2e-31 139.0 105 70.5
arahy.Tifrunner.gnm1.ann1.UT5NS3 Arachis hypogaea HOM05D000300 ORTHO05D008505 2.8e-31 138.7 108 66.7
arahy.Tifrunner.gnm1.ann1.Z7GNQ3 Arachis hypogaea HOM05D000300 ORTHO05D008505 2.8e-31 138.7 108 66.7
Peaxi162Scf00000g00412 Petunia axillaris HOM05D000300 ORTHO05D008505 2.8e-31 138.7 108 67.6
TWI38G1039 Tripterygium wilfordii HOM05D000300 ORTHO05D008505 4.9e-31 137.9 108 67.6
TPR.G38968 Trifolium pratense HOM05D000300 ORTHO05D008505 6.3e-31 137.5 108 66.7
AL8G28840 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 1.1e-30 136.7 105 69.5
AT5G53800 Arabidopsis thaliana HOM05D000300 ORTHO05D008505 1.1e-30 136.7 105 69.5
Ca_01834_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008505 1.1e-30 136.7 108 66.7
Lalb_Chr20g0109791 Lupinus albus HOM05D000300 ORTHO05D008505 1.4e-30 136.3 108 66.7
MELO3C016520.2 Cucumis melo HOM05D000300 ORTHO05D008505 1.8e-30 136.0 108 65.7
Hma1.2p1_1618F.1_g293900 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 1.8e-30 136.0 108 65.7
Os04g0530300 Oryza sativa ssp. japonica HOM05D000300 ORTHO05D008505 1.8e-30 136.0 107 65.4
GSVIVG01014363001 Vitis vinifera HOM05D000300 ORTHO05D000383 2.4e-30 135.6 105 67.6
ClCG10G006870 Citrullus lanatus HOM05D000300 ORTHO05D008505 4.1e-30 134.8 108 64.8
PSO541G3772 Papaver somniferum HOM05D000300 ORTHO05D008505 4.1e-30 134.8 108 66.7
Psat3g101080 Pisum sativum HOM05D000300 ORTHO05D008505 5.4e-30 134.4 108 65.7
CsaV3_3G006220 Cucumis sativus L. HOM05D000300 ORTHO05D008505 9.2e-30 133.7 108 64.8
MD11G1245600 Malus domestica HOM05D000300 ORTHO05D008505 1.2e-29 133.3 108 67.6
unitig_747.g21571 Utricularia gibba HOM05D000300 ORTHO05D008505 1.2e-29 133.3 108 66.7
PSO675G9140 Papaver somniferum HOM05D000300 ORTHO05D008505 1.6e-29 132.9 108 65.7
ATR0680G062 Amborella trichopoda HOM05D000300 ORTHO05D008505 3.5e-29 131.7 108 64.8
COL.COLO4_09413 Corchorus olitorius HOM05D000300 ORTHO05D008505 1.0e-28 130.2 93 75.3
CDE02G0965 Ceratophyllum demersum HOM05D000300 ORTHO05D008505 1.7e-28 129.4 108 63.9
Migut.M00819 Erythranthe guttata HOM05D000300 ORTHO05D008505 1.7e-28 129.4 105 63.8
PGR031G2267 Punica granatum HOM05D000300 ORTHO05D008505 2.9e-28 128.6 108 64.8
Nitab4.5_0000662g0230 Nicotiana tabacum HOM05D000300 ORTHO05D008505 3.8e-28 128.3 126 58.7
Nitab4.5_0007374g0020 Nicotiana tabacum HOM05D000300 ORTHO05D008505 6.6e-28 127.5 141 53.9
Aa31LG3G10120 Aethionema arabicum HOM05D000300 ORTHO05D008505 8.6e-28 127.1 136 55.1
HPP92_025994 Vanilla planifolia HOM05D000300 ORTHO05D008505 8.6e-28 127.1 108 63.9
DCAR_013093 Daucus carota HOM05D000300 ORTHO05D008505 1.5e-27 126.3 105 65.7
ECA240G3136 Erigeron canadensis HOM05D000300 ORTHO05D008505 1.5e-27 126.3 107 63.6
Cpa.g.sc80.49 Carica papaya HOM05D000300 ORTHO05D008505 9.5e-27 123.6 101 63.4
Mapoly0026s0140 Marchantia polymorpha HOM05D000300 ORTHO05D008505 2.8e-26 122.1 104 62.5
Lsat_1_v5_gn_9_97040 Lactuca sativa HOM05D000300 ORTHO05D008505 3.6e-26 121.7 107 60.7
SalBow7G1295 Salvia bowleyana HOM05D000300 ORTHO05D008505 4.7e-26 121.3 105 61.0
SalBow7G3546 Salvia bowleyana HOM05D000300 ORTHO05D008505 4.7e-26 121.3 105 61.0
SMO367G0821 Selaginella moellendorffii HOM05D000300 ORTHO05D008505 1.0e-25 120.2 106 60.4
Sc16g0006940 Simmondsia chinensis HOM05D000300 ORTHO05D008505 2.3e-25 119.0 132 56.1
SEGI_35024 Sequoiadendron giganteum HOM05D000300 ORTHO05D008505 6.8e-25 117.5 106 57.5
Sopen12g007100 Solanum pennellii HOM05D000300 ORTHO05D008505 1.1e-22 110.2 108 55.6
Pp3c25_13690 Physcomitrium patens HOM05D000300 ORTHO05D008505 1.8e-22 109.4 109 55.0
Solyc12g013790.3 Solanum lycopersicum HOM05D000300 ORTHO05D008505 3.2e-22 108.6 108 54.6
Sed0021435 Sechium edule HOM05D000300 ORTHO05D008505 1.2e-21 106.7 108 56.5
EL10Ac4g08146 Beta vulgaris HOM05D000300 ORTHO05D008505 1.6e-21 106.3 64 87.5
Zm00001eb075780 Zea mays HOM05D000300 ORTHO05D008505 1.6e-21 106.3 92 62.0
AagrBONN_evm.TU.Sc2ySwM_340.171 Anthoceros agrestis HOM05D000300 ORTHO05D008505 2.3e-20 102.4 106 56.6
Hma1.2p1_1738F.1_g299980 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 2.3e-20 102.4 108 54.6
HanXRQChr03g0078531 Helianthus annuus HOM05D000300 ORTHO05D008505 1.2e-18 96.7 92 59.8
FAN25G3258 Fragaria x ananassa HOM05D000300 ORTHO05D008505 1.3e-15 86.7 64 71.9
arahy.Tifrunner.gnm1.ann1.MM4FDC Arachis hypogaea HOM05D000300 ORTHO05D008505 7.8e-13 77.4 96 49.0
GSVIVG01021702001 Vitis vinifera HOM05D000300 ORTHO05D008505 1.0e-12 77.0 78 56.4
TAR626G1261 Trochodendron aralioides HOM05D000300 ORTHO05D008505 3.9e-12 75.1 69 58.0
GSVIVG01021454001 Vitis vinifera HOM05D000300 ORTHO05D008505 6.6e-12 74.3 78 53.8
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 1.1e-11 73.6 70 55.7
AL8G13240 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 8.9e-09 63.9 50 66.0
arahy.Tifrunner.gnm1.ann1.5AH57W Arachis hypogaea HOM05D000300 ORTHO05D008505 1.2e-08 63.5 51 64.7
arahy.Tifrunner.gnm1.ann1.F96EFF Arachis hypogaea HOM05D003444 ORTHO05D008505 3.7e-07 58.5 67 49.3
Cre03.g176050 Chlamydomonas reinhardtii HOM05D000300 ORTHO05D008505 1.4e-06 56.6 106 35.8


User provided reference genes

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