Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62029351 Chenopodium quinoa HOM05D002890 ORTHO05D005855 0.0e+00 2517.3 1316 100.0
AUR62034232 Chenopodium quinoa HOM05D002890 ORTHO05D005855 0.0e+00 2231.8 1316 90.5
EL10Ac4g08116 Beta vulgaris HOM05D002890 ORTHO05D005855 0.0e+00 1356.3 1377 60.6
Ah.06g183850 Amaranthus hybridus HOM05D002890 ORTHO05D005855 0.0e+00 1313.9 1358 58.6
Hund21410 Selenicereus undatus HOM05D002890 ORTHO05D005855 0.0e+00 1140.9 1395 52.0
Sc17g0007380 Simmondsia chinensis HOM05D002890 ORTHO05D005855 4.2e-235 819.3 1437 42.1
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 2.0e-221 773.9 1473 40.1
TAR381G0565 Trochodendron aralioides HOM05D002890 ORTHO05D005855 7.7e-213 745.3 1335 40.4
Dinv13894 Davidia involucrata HOM05D002890 ORTHO05D005855 9.5e-211 738.4 1481 39.8
Ciclev10010907m.g Citrus clementina HOM05D002890 ORTHO05D005855 7.5e-208 728.8 1431 39.0
Gorai.011G014000 Gossypium raimondii HOM05D002890 ORTHO05D005855 3.9e-204 716.5 1455 38.2
Gohir.D10G012400 Gossypium hirsutum HOM05D002890 ORTHO05D005855 1.5e-203 714.5 1455 38.0
COL.COLO4_31775 Corchorus olitorius HOM05D002890 ORTHO05D005855 1.9e-203 714.1 1450 38.3
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 9.5e-203 711.8 1487 38.0
Duzib192G0355 Durio zibethinus HOM05D002890 ORTHO05D005855 9.5e-203 711.8 1460 37.7
Thecc.06G220400 Theobroma cacao HOM05D002890 ORTHO05D005855 1.8e-201 707.6 1442 38.6
QL03p063938 Quercus lobata HOM05D002890 ORTHO05D005855 2.3e-201 707.2 1475 37.8
Gohir.A10G012660 Gossypium hirsutum HOM05D002890 ORTHO05D005855 1.2e-200 704.9 1457 38.7
QL03p063516 Quercus lobata HOM05D002890 ORTHO05D005855 1.5e-200 704.5 1482 37.4
Haze_06800 Corylus avellana HOM05D002890 ORTHO05D005855 4.1e-198 696.4 1510 37.6
Potri.011G003500 Populus trichocarpa HOM05D002890 ORTHO05D005855 4.1e-198 696.4 1439 38.9
TAR629G0274 Trochodendron aralioides HOM05D002890 ORTHO05D005855 1.3e-196 691.4 1501 37.7
Sabra11G0001700 Salix brachista HOM05D002890 ORTHO05D005855 1.5e-195 688.0 1425 38.9
arahy.Tifrunner.gnm1.ann1.1MU60G Arachis hypogaea HOM05D002890 ORTHO05D005855 1.2e-192 678.3 1403 37.4
arahy.Tifrunner.gnm1.ann1.3SKL4U Arachis hypogaea HOM05D002890 ORTHO05D005855 2.6e-192 677.2 1404 37.4
CiPaw.09G092000 Carya illinoinensis HOM05D002890 ORTHO05D005855 5.8e-192 676.0 1495 37.9
CSS0042685 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D005855 9.2e-190 668.7 1381 37.9
MD10G1321400 Malus domestica HOM05D002890 ORTHO05D005855 3.5e-189 666.8 1450 37.9
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 1.7e-188 664.5 1414 37.6
Rhsim06G0075600 Rhododendron simsii HOM05D002890 ORTHO05D005855 3.0e-188 663.7 1438 38.2
CANSAT56G4108 Cannabis sativa HOM05D002890 ORTHO05D005855 1.2e-186 658.3 1437 36.9
TWI38G1984 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 2.8e-186 657.1 1460 36.2
Prupe.4G020900 Prunus persica HOM05D002890 ORTHO05D005855 5.2e-185 652.9 1467 38.0
vmacro21934 Vaccinium macrocarpon HOM05D002890 ORTHO05D005855 1.4e-182 644.8 1316 38.5
Glyma.15G107800 Glycine max HOM05D002890 ORTHO05D005855 7.1e-182 642.5 1432 37.7
Manes.17G038900 Manihot esculenta HOM05D002890 ORTHO05D005855 3.5e-181 640.2 1448 36.5
Glyma.13G204900 Glycine max HOM05D002890 ORTHO05D005855 6.0e-181 639.4 1423 37.5
RcHm_v2.0_Chr5g0002971 Rosa chinensis HOM05D002890 ORTHO05D005855 1.3e-180 638.3 1427 37.9
Phvul.006G149850 Phaseolus vulgaris HOM05D002890 ORTHO05D005855 3.0e-180 637.1 1427 36.7
GSVIVG01012724001 Vitis vinifera HOM05D002890 ORTHO05D005855 1.5e-179 634.8 1381 37.5
VMungo1309G2953 Vigna mungo HOM05D002890 ORTHO05D005855 4.3e-179 633.3 1398 36.8
Lalb_Chr20g0118631 Lupinus albus HOM05D002890 ORTHO05D005855 5.2e-177 626.3 1379 37.0
DCAR_028200 Daucus carota HOM05D002890 ORTHO05D005855 2.0e-176 624.4 1297 39.1
FvH4_3g02070 Fragaria vesca HOM05D002890 ORTHO05D005855 5.8e-176 622.9 1416 37.3
Cc09_g01670 Coffea canephora HOM05D002890 ORTHO05D005855 2.2e-175 620.9 1373 37.0
Psat3g207880 Pisum sativum HOM05D002890 ORTHO05D005855 3.8e-175 620.2 1297 37.5
Eucgr.E04054 Eucalyptus grandis HOM05D002890 ORTHO05D005855 4.9e-175 619.8 1371 36.9
TWI38G1729 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 4.9e-175 619.8 1383 36.3
CAN.G65.76 Capsicum annuum HOM05D002890 ORTHO05D005855 8.4e-175 619.0 1442 35.8
FAN21G0074 Fragaria x ananassa HOM05D002890 ORTHO05D005855 2.4e-174 617.5 1441 37.1
Lj6g0006472 Lotus japonicus HOM05D002890 ORTHO05D005855 4.2e-174 616.7 1349 37.1
Aqoxy1G00468 Aquilegia oxysepala HOM05D002890 ORTHO05D005855 5.4e-174 616.3 1287 38.3
Actinidia36598 Actinidia chinensis HOM05D002890 ORTHO05D005855 1.6e-173 614.8 1318 37.4
FAN25G2328 Fragaria x ananassa HOM05D002890 ORTHO05D005855 4.6e-173 613.2 1428 37.3
MSTRG.23208 Avicennia marina HOM05D002890 ORTHO05D005855 1.3e-172 611.7 1302 37.1
VMungo0540G2163 Vigna mungo HOM05D002890 ORTHO05D005855 1.3e-172 611.7 1439 35.6
Ca_00660_v3 Cicer arietinum L. HOM05D002890 ORTHO05D005855 3.9e-172 610.1 1415 36.1
PSO017G2731 Papaver somniferum HOM05D002890 ORTHO05D005855 4.3e-171 606.7 1264 38.1
ClCG10G002660 Citrullus lanatus HOM05D002890 ORTHO05D005855 5.6e-171 606.3 1168 38.4
Sopen06g028640 Solanum pennellii HOM05D002890 ORTHO05D005855 5.6e-171 606.3 1460 35.5
Medtr2g023280 Medicago truncatula HOM05D002890 ORTHO05D005855 9.6e-171 605.5 1262 37.7
Solyc06g072270.4 Solanum lycopersicum HOM05D002890 ORTHO05D005855 9.6e-171 605.5 1428 35.7
Lj1g0005233 Lotus japonicus HOM05D002890 ORTHO05D005855 1.8e-169 601.3 1335 36.8
Sed0017963 Sechium edule HOM05D002890 ORTHO05D005855 2.6e-168 597.4 1209 37.9
MELO3C013937.2 Cucumis melo HOM05D002890 ORTHO05D005855 4.4e-168 596.7 1209 37.7
SalBow5G1338 Salvia bowleyana HOM05D002890 ORTHO05D005855 5.8e-168 596.3 1291 37.7
TPR.G9950 Trifolium pratense HOM05D002890 ORTHO05D005855 6.0e-165 586.3 1269 37.7
CsaV3_3G002680 Cucumis sativus L. HOM05D002890 ORTHO05D005855 1.0e-164 585.5 1217 37.0
Nitab4.5_0001678g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.3e-164 585.1 1283 36.0
PSO478G2895 Papaver somniferum HOM05D002890 ORTHO05D005855 3.6e-162 577.0 1267 36.9
Migut.O00260 Erythranthe guttata HOM05D002890 ORTHO05D005855 1.2e-160 572.0 1258 36.4
PGR042G1125 Punica granatum HOM05D002890 ORTHO05D005855 2.6e-160 570.9 1400 36.6
Nitab4.5_0000033g0410 Nicotiana tabacum HOM05D002890 ORTHO05D005855 3.8e-159 567.0 1313 35.7
THA.LOC104812970 Tarenaya hassleriana HOM05D002890 ORTHO05D005855 3.8e-159 567.0 1399 35.7
unitig_749.g13717 Utricularia gibba HOM05D002890 ORTHO05D005855 2.5e-150 537.7 1261 35.6
ECA236G1013 Erigeron canadensis HOM05D002890 ORTHO05D005855 1.1e-147 528.9 1233 36.7
Sp2g00190 Schrenkiella parvula HOM05D002890 ORTHO05D005855 1.5e-147 528.5 1357 34.6
AL2G10210 Arabidopsis lyrata HOM05D002890 ORTHO05D005855 1.8e-145 521.5 1372 34.2
MD05G1346800 Malus domestica HOM05D002890 ORTHO05D005855 3.1e-145 520.8 1308 35.7
HanXRQChr15g0470641 Helianthus annuus HOM05D002890 ORTHO05D005855 4.5e-144 516.9 1236 35.8
AT1G64570 Arabidopsis thaliana HOM05D002890 ORTHO05D005855 1.4e-142 511.9 1372 34.3
CARHR046380 Cardamine hirsuta HOM05D002890 ORTHO05D005855 2.3e-140 504.6 1357 33.6
CDE05G0302 Ceratophyllum demersum HOM05D002890 ORTHO05D005855 2.3e-140 504.6 1271 35.1
Peaxi162Scf00643g00544 Petunia axillaris HOM05D002890 ORTHO05D005855 4.8e-138 496.9 1456 32.6
ATR0580G054 Amborella trichopoda HOM05D002890 ORTHO05D005855 1.2e-136 492.3 1034 37.2
Aa31LG2G1570 Aethionema arabicum HOM05D002890 ORTHO05D005855 1.3e-135 488.8 1232 34.9
Thhalv10023221m.g Eutrema salsugineum HOM05D002890 ORTHO05D005855 1.1e-134 485.7 1356 33.6
Lsat_1_v5_gn_7_16040 Lactuca sativa HOM05D002890 ORTHO05D005855 5.5e-134 483.4 1286 35.1
A09p14580 Brassica napus HOM05D002890 ORTHO05D005855 1.6e-133 481.9 1337 33.1
BraA09t37106Z Brassica rapa HOM05D002890 ORTHO05D005855 6.1e-133 479.9 1244 34.0
CiPaw.10G071100 Carya illinoinensis HOM05D002890 ORTHO05D005855 7.9e-133 479.6 1012 37.9
Carub.0002s0019 Capsella rubella HOM05D002890 ORTHO05D005855 6.7e-132 476.5 1369 33.2
C09p17660 Brassica napus HOM05D002890 ORTHO05D005855 1.5e-131 475.3 1239 33.9
BolC9t54660H Brassica oleracea HOM05D002890 ORTHO05D005855 1.5e-131 475.3 1239 33.9
Zm00001eb310710 Zea mays HOM05D002890 ORTHO05D005855 3.6e-125 454.1 1198 34.1
MBI15_g03194_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D005855 5.1e-124 450.3 1364 32.6
Atru.chr10.2227 Acer truncatum HOM05D002890 ORTHO05D005855 1.5e-120 438.7 579 48.0
SEGI_27437 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 1.6e-117 428.7 1193 32.4
Nitab4.5_0001247g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 4.7e-109 400.6 1199 32.3
Nitab4.5_0022153g0010 Nicotiana tabacum HOM05D002890 ORTHO05D005855 7.5e-107 393.3 634 41.5
HPP92_025073 Vanilla planifolia HOM05D002890 ORTHO05D005855 1.7e-98 365.5 1231 31.9
Nn4g25681 Nelumbo nucifera HOM05D002890 ORTHO05D005855 3.7e-98 364.4 626 42.2
HPP92_025078 Vanilla planifolia HOM05D002890 ORTHO05D005855 3.5e-96 357.8 609 40.2
Mapoly0029s0108 Marchantia polymorpha HOM05D002890 ORTHO05D005855 3.0e-92 344.7 939 32.8
Nitab4.5_0002954g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.4e-89 335.9 919 33.0
Pp3c26_140 Physcomitrium patens HOM05D002890 ORTHO05D005855 1.1e-86 326.2 866 33.7
Oeu039345.1 Olea europaea HOM05D002890 ORTHO05D005855 1.2e-85 322.8 444 46.8
SHI02202 Sapria himalayana HOM05D000002 ORTHO05D000001 2.4e-81 308.5 488 43.9
SMO364G0505 Selaginella moellendorffii HOM05D002890 ORTHO05D005855 4.7e-77 294.3 506 42.1
RcHm_v2.0_Chr5g0003091 Rosa chinensis HOM05D002890 ORTHO05D005855 1.7e-71 275.8 296 52.7
BcaC04g22581 Brassica carinata HOM05D002890 ORTHO05D007906 1.5e-70 272.7 501 38.5
Actinidia10696 Actinidia chinensis HOM05D002890 ORTHO05D005855 4.3e-70 271.2 693 33.9
AagrBONN_evm.TU.Sc2ySwM_228.3189 Anthoceros agrestis HOM05D002890 ORTHO05D005855 1.4e-65 256.1 874 29.3
Atru.chr10.2228 Acer truncatum HOM05D002890 ORTHO05D005855 3.2e-65 255.0 810 32.6
Lj1P1230T41 Lonicera japonica HOM05D002890 ORTHO05D005855 2.1e-64 252.3 399 43.4
RcHm_v2.0_Chr5g0003031 Rosa chinensis HOM05D002890 ORTHO05D005855 2.4e-60 238.8 271 50.9
SGA_v2.0_scaffold25G10747 Striga asiatica HOM05D002890 ORTHO05D005855 1.3e-50 206.5 755 30.5
QL05p073153 Quercus lobata HOM05D002890 ORTHO05D005855 3.8e-50 204.9 532 33.6
BcaC01g05870 Brassica carinata HOM05D002890 ORTHO05D005855 1.2e-43 183.3 434 35.3
C03p21570 Brassica napus HOM05D002890 ORTHO05D005855 2.6e-43 182.2 448 34.4
BolC3t14541H Brassica oleracea HOM05D002890 ORTHO05D005855 4.3e-38 164.9 439 33.3
Oeu002905.1 Olea europaea HOM05D002890 ORTHO05D005855 7.9e-32 144.1 640 30.8
Cpa.g.c46709 Carica papaya HOM05D002890 ORTHO05D005855 8.7e-31 140.6 143 54.5
Duzib160G0022 Durio zibethinus HOM05D002890 ORTHO05D005855 8.7e-31 140.6 265 40.0
SHI01979 Sapria himalayana HOM05D002890 ORTHO05D005855 9.6e-30 137.1 164 45.7
SEGI_38151 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 1.3e-29 136.7 676 27.4
CiPaw.10G071000 Carya illinoinensis HOM05D002890 ORTHO05D005855 2.1e-29 136.0 267 40.8
Potri.004G015034 Populus trichocarpa HOM05D002890 ORTHO05D005855 6.9e-28 131.0 252 39.3
CBR_g32188 Chara braunii HOM05D002890 ORTHO05D005855 7.2e-25 120.9 885 23.5
Medtr2g023290 Medicago truncatula HOM05D002975 ORTHO05D005855 9.3e-25 120.6 524 28.8
MD05G1347100 Malus domestica HOM05D002890 ORTHO05D005855 1.2e-24 120.2 345 31.0
BcaC04g22582 Brassica carinata HOM05D002890 ORTHO05D005855 6.7e-23 114.4 513 28.1
BcaB07g31476 Brassica carinata HOM05D002890 ORTHO05D005855 4.5e-19 101.7 496 27.6
QL05p073148 Quercus lobata HOM05D002890 ORTHO05D005855 1.3e-18 100.1 494 24.9
Nitab4.5_0002954g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.7e-16 92.4 126 44.4
MCO05G671 Micromonas commoda HOM05D002890 ORTHO05D005855 2.2e-13 82.8 676 22.5
HPP92_025077 Vanilla planifolia HOM05D002890 ORTHO05D005855 2.2e-13 82.8 536 27.6
Nitab4.5_0002954g0060 Nicotiana tabacum HOM05D002890 ORTHO05D005855 3.7e-13 82.0 65 61.5
SEGI_20102 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 8.5e-10 70.9 74 48.6
Potri.004G015001 Populus trichocarpa HOM05D002890 ORTHO05D005855 2.5e-09 69.3 226 32.7
SEGI_38924 Sequoiadendron giganteum HOM05D009358 ORTHO05D011087 1.2e-08 67.0 110 45.5
Nitab4.5_0000267g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 3.6e-08 65.5 184 32.6


User provided reference genes

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