Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62029337 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 2519.6 1252 100.0
AUR62015624 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 2473.0 1252 97.9
Ah.06g183680 Amaranthus hybridus HOM05D004029 ORTHO05D004613 0.0e+00 2252.2 1253 88.3
EL10Ac4g08092 Beta vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 2239.2 1253 88.2
Hund02202 Selenicereus undatus HOM05D004029 ORTHO05D004613 0.0e+00 2117.0 1238 83.8
Sc03g0009690 Simmondsia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 2053.9 1284 78.7
CSS0001233 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 1998.0 1258 77.8
CSS0038840 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 1995.3 1258 77.7
COL.COLO4_03559 Corchorus olitorius HOM05D004029 ORTHO05D004613 0.0e+00 1990.3 1259 78.1
Duzib268G1628 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 1981.1 1268 77.2
Thecc.07G074600 Theobroma cacao HOM05D004029 ORTHO05D004613 0.0e+00 1966.4 1260 76.7
Gohir.D01G054200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1960.7 1259 76.4
Gorai.002G074000 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1956.0 1259 76.3
Actinidia05171 Actinidia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1953.3 1259 75.7
Duzib213G0443 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 1950.6 1266 75.9
Manes.03G114700 Manihot esculenta HOM05D004029 ORTHO05D004613 0.0e+00 1946.8 1262 75.8
Potri.011G123900 Populus trichocarpa HOM05D004029 ORTHO05D004613 0.0e+00 1937.9 1258 75.5
Cfa020529 Carpinus fangiana HOM05D004029 ORTHO05D004613 0.0e+00 1934.8 1263 75.1
GSVIVG01014409001 Vitis vinifera HOM05D004029 ORTHO05D004613 0.0e+00 1932.1 1260 75.6
CiPaw.11G174500 Carya illinoinensis HOM05D004029 ORTHO05D004613 0.0e+00 1931.4 1260 75.4
Nn1g03970 Nelumbo nucifera HOM05D004029 ORTHO05D004613 0.0e+00 1926.8 1262 74.9
MD11G1239600 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 1919.4 1260 75.0
CANSAT11G2434 Cannabis sativa HOM05D004029 ORTHO05D004613 0.0e+00 1918.7 1257 75.1
Prupe.4G187500 Prunus persica HOM05D004029 ORTHO05D004613 0.0e+00 1915.2 1260 74.8
TWI38G0763 Tripterygium wilfordii HOM05D004029 ORTHO05D004613 0.0e+00 1913.3 1257 74.7
Rhsim06G0193700 Rhododendron simsii HOM05D004029 ORTHO05D004613 0.0e+00 1909.4 1254 74.8
PGR031G0420 Punica granatum HOM05D004029 ORTHO05D004613 0.0e+00 1904.0 1257 74.5
CsaV3_3G044490 Cucumis sativus L. HOM05D004029 ORTHO05D004613 0.0e+00 1898.2 1259 74.1
Eucgr.F03341 Eucalyptus grandis HOM05D004029 ORTHO05D004613 0.0e+00 1894.8 1262 74.2
PSO675G2841 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1894.8 1264 73.7
PSO541G4143 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1894.4 1264 73.8
MD03G1222200 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 1890.9 1260 74.4
Sabra11G0109200 Salix brachista HOM05D004029 ORTHO05D004613 0.0e+00 1890.5 1300 72.2
Aqoxy7G04099 Aquilegia oxysepala HOM05D004029 ORTHO05D004613 0.0e+00 1885.5 1258 73.5
FAN21G1497 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1884.0 1258 73.9
MSTRG.12924 Avicennia marina HOM05D004029 ORTHO05D004613 0.0e+00 1877.8 1259 73.0
Carub.0008s1474 Capsella rubella HOM05D004029 ORTHO05D004613 0.0e+00 1877.1 1258 73.2
RcHm_v2.0_Chr5g0034971 Rosa chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1872.4 1274 72.8
FAN25G1694 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1871.7 1258 73.6
FvH4_3g20750 Fragaria vesca HOM05D004029 ORTHO05D004613 0.0e+00 1870.9 1258 73.5
FAN16G1973 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1870.5 1258 73.4
vmacro11822 Vaccinium macrocarpon HOM05D004029 ORTHO05D004613 0.0e+00 1869.4 1282 72.0
AT5G54440 Arabidopsis thaliana HOM05D004029 ORTHO05D004613 0.0e+00 1868.2 1259 72.8
FAN11G1114 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1867.4 1258 73.4
Lj3g0020332 Lotus japonicus HOM05D004029 ORTHO05D004613 0.0e+00 1866.3 1256 73.7
Peaxi162Scf01111g00112 Petunia axillaris HOM05D004029 ORTHO05D004613 0.0e+00 1864.0 1258 72.7
THA.LOC104811852 Tarenaya hassleriana HOM05D004029 ORTHO05D004613 0.0e+00 1864.0 1258 72.2
Thhalv10012467m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 0.0e+00 1862.8 1260 72.5
CARHR267710 Cardamine hirsuta HOM05D004029 ORTHO05D004613 0.0e+00 1860.9 1258 72.3
Migut.H01912 Erythranthe guttata HOM05D004029 ORTHO05D004613 0.0e+00 1859.0 1258 72.3
Sp6g16420 Schrenkiella parvula HOM05D004029 ORTHO05D004613 0.0e+00 1856.3 1262 72.1
Aa31LG3G10350 Aethionema arabicum HOM05D004029 ORTHO05D004613 0.0e+00 1855.5 1260 72.4
Glyma.13G280700 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1855.5 1261 73.2
Lalb_Chr25g0286611 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1853.6 1254 72.6
HanXRQChr10g0289491 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1852.0 1258 72.7
Sopen07g031610 Solanum pennellii HOM05D004029 ORTHO05D004613 0.0e+00 1850.9 1256 72.0
arahy.Tifrunner.gnm1.ann1.3J4V9H Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1848.2 1257 72.1
DCAR_013079 Daucus carota HOM05D004029 ORTHO05D004613 0.0e+00 1843.9 1266 71.2
Solyc07g063440.3 Solanum lycopersicum HOM05D004029 ORTHO05D004613 0.0e+00 1841.6 1256 71.7
Phvul.005G085200 Phaseolus vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1840.5 1258 72.8
Ca_01815_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1838.5 1257 72.9
BcaC03g14313 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1834.7 1260 71.3
A02p10290 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1833.2 1260 71.2
CAN.G162.91 Capsicum annuum HOM05D004029 ORTHO05D004613 0.0e+00 1833.2 1257 71.6
BcaB05g22133 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1832.4 1259 71.2
BolC2t07800H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1832.0 1261 71.3
arahy.Tifrunner.gnm1.ann1.IWX37I Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1831.2 1283 70.8
C02p17030 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1830.1 1261 71.1
Medtr2g080050 Medicago truncatula HOM05D004029 ORTHO05D004613 0.0e+00 1828.5 1257 72.2
BraA02t06097Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1827.8 1266 70.9
BcaB08g35795 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1827.0 1260 71.1
ClCG11G018320 Citrullus lanatus HOM05D004029 ORTHO05D004613 0.0e+00 1825.8 1327 69.3
Haze_09504 Corylus avellana HOM05D004029 ORTHO05D004613 0.0e+00 1824.3 1250 72.6
BcaC04g20340 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1823.5 1258 70.8
ATR0064G128 Amborella trichopoda HOM05D004029 ORTHO05D004613 0.0e+00 1821.6 1269 70.4
QL08p019114 Quercus lobata HOM05D004029 ORTHO05D004613 0.0e+00 1819.7 1518 62.6
A10p11660 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1819.3 1259 71.0
BolC9t57346H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1818.9 1259 70.8
C09p44730 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1812.0 1259 70.6
BraA10t43261Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1810.4 1262 70.7
Psat5g246120 Pisum sativum HOM05D004029 ORTHO05D004613 0.0e+00 1806.2 1275 70.9
Lalb_Chr01g0016971 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1800.8 1255 71.4
ECA240G1154 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1800.0 1243 71.6
Lj1C850G7 Lonicera japonica HOM05D004029 ORTHO05D004613 0.0e+00 1798.5 1271 70.7
Ciclev10007273m.g Citrus clementina HOM05D004029 ORTHO05D004613 0.0e+00 1793.1 1258 70.3
Ca_30535_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1776.9 1257 71.3
SGA_v2.0_scaffold77G25216 Striga asiatica HOM05D004029 ORTHO05D004613 0.0e+00 1770.7 1322 66.9
Lsat_1_v5_gn_9_95861 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1756.5 1253 70.4
Sed0019496 Sechium edule HOM05D004029 ORTHO05D004613 0.0e+00 1725.7 1162 72.9
Os12g0554400 Oryza sativa ssp. japonica HOM05D004029 ORTHO05D004613 0.0e+00 1702.2 1259 66.0
Lsat_1_v5_gn_7_105721 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1695.6 1255 67.2
VMungo1080G0798 Vigna mungo HOM05D004029 ORTHO05D004613 0.0e+00 1684.1 1161 71.6
Gorai.007G319300 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1587.8 1079 72.0
Oeu008022.1 Olea europaea HOM05D004029 ORTHO05D004613 0.0e+00 1583.2 1094 71.1
ECA236G3046 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1574.3 1229 64.0
Nitab4.5_0001204g0130 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1556.6 1050 73.3
HanXRQChr13g0386411 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1528.8 1261 60.6
Atru.chr2.2811 Acer truncatum HOM05D004029 ORTHO05D004613 0.0e+00 1526.9 1034 72.7
Glyma.12G220900 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1513.8 1006 74.8
Gohir.A11G282734 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1488.4 1062 70.0
AL8G29790 Arabidopsis lyrata HOM05D004029 ORTHO05D004613 0.0e+00 1479.9 1030 71.1
Nitab4.5_0000815g0060 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1444.9 1096 67.2
Gohir.A01G067000 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1393.6 856 79.3
Gohir.D11G296200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1385.5 1016 68.7
TAR627G0860 Trochodendron aralioides HOM05D004029 ORTHO05D004613 0.0e+00 1364.7 925 73.3
Mapoly0031s0138 Marchantia polymorpha HOM05D004029 ORTHO05D004613 0.0e+00 1286.6 1392 49.3
Pp3c26_12060 Physcomitrium patens HOM05D004029 ORTHO05D004613 0.0e+00 1182.5 1358 47.9
unitig_0.g2259 Utricularia gibba HOM05D004029 ORTHO05D004613 0.0e+00 1182.2 1258 52.1
Zm00001eb137170 Zea mays HOM05D004029 ORTHO05D004613 0.0e+00 1115.5 745 72.2
MELO3C018224.2 Cucumis melo HOM05D004029 ORTHO05D004613 0.0e+00 1105.1 764 71.9
CDE05G1182 Ceratophyllum demersum HOM05D004029 ORTHO05D004613 0.0e+00 1076.2 865 64.0
AagrBONN_evm.TU.Sc2ySwM_344.2130 Anthoceros agrestis HOM05D004029 ORTHO05D004613 1.7e-286 989.9 1158 46.4
Cpa.g.sc80.100 Carica papaya HOM05D004029 ORTHO05D004613 1.6e-279 966.8 1010 52.6
Dinv08327 Davidia involucrata HOM05D004029 ORTHO05D004613 6.1e-260 901.7 592 76.2
Gohir.1Z049674 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.9e-253 880.2 535 79.8
Psat4g074000 Pisum sativum HOM05D004029 ORTHO05D004613 2.0e-242 843.6 839 54.4
Psat3g119680 Pisum sativum HOM05D004029 ORTHO05D004613 6.7e-206 722.2 446 78.0
CBR_g48014 Chara braunii HOM05D004029 ORTHO05D004613 1.7e-201 707.6 1435 33.0
Dinv08328 Davidia involucrata HOM05D004029 ORTHO05D004613 7.4e-173 612.5 454 66.7
SEGI_15865 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 9.8e-157 558.9 489 57.7
TAR627G0431 Trochodendron aralioides HOM05D004029 ORTHO05D004613 3.1e-155 553.9 306 85.3
SHI21494 Sapria himalayana HOM05D004029 ORTHO05D004613 2.9e-116 424.5 316 65.5
Rhsim06G0194500 Rhododendron simsii HOM05D004029 ORTHO05D004613 1.4e-99 369.0 205 83.9
SEGI_37124 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 3.5e-90 337.8 316 59.2
Pp3c3_4080 Physcomitrium patens HOM05D004029 ORTHO05D004613 1.3e-89 335.9 372 47.6
HPP92_020359 Vanilla planifolia HOM05D004029 ORTHO05D004613 3.3e-88 331.3 194 78.4
Atru.chr2.2810 Acer truncatum HOM05D004029 ORTHO05D004613 4.1e-78 297.7 172 79.1
SMO115G0239 Selaginella moellendorffii HOM05D004029 ORTHO05D004613 5.3e-78 297.4 261 56.3
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 6.5e-76 290.4 236 64.4
Psat1g176880 Pisum sativum HOM05D004029 ORTHO05D004613 1.0e-73 283.1 200 71.0
Dinv08326 Davidia involucrata HOM05D004029 ORTHO05D004613 8.8e-73 280.0 159 83.6
Lsat_1_v5_gn_3_80381 Lactuca sativa HOM05D004029 ORTHO05D004613 1.5e-69 269.2 275 54.9
Lsat_1_v5_gn_4_112941 Lactuca sativa HOM05D004029 ORTHO05D004613 1.5e-69 269.2 275 54.9
Lsat_1_v5_gn_7_74701 Lactuca sativa HOM05D004029 ORTHO05D004613 1.5e-69 269.2 275 54.9
SEGI_39917 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 2.6e-69 268.5 262 53.1
Atru.chr2.2808 Acer truncatum HOM05D004029 ORTHO05D004613 1.3e-68 266.2 152 81.6
Thhalv10015732m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 2.9e-68 265.0 180 68.3
Sed0014205 Sechium edule HOM05D004029 ORTHO05D004613 2.2e-63 248.8 195 66.2
HPP92_020356 Vanilla planifolia HOM05D004029 ORTHO05D004613 9.4e-59 233.4 450 32.7
Actinidia39414 Actinidia chinensis HOM05D004029 ORTHO05D004613 2.7e-58 231.9 152 71.7
Gohir.1Z049574 Gossypium hirsutum HOM05D004029 ORTHO05D004613 2.3e-57 228.8 160 70.0
ATR0693G350 Amborella trichopoda HOM05D004029 ORTHO05D004613 1.7e-52 212.6 147 70.1
ATR0693G140 Amborella trichopoda HOM05D004029 ORTHO05D004613 7.2e-51 207.2 132 74.2
Gohir.A11G282591 Gossypium hirsutum HOM05D004029 ORTHO05D004613 4.4e-48 198.0 136 67.6
Lsat_1_v5_gn_8_16361 Lactuca sativa HOM05D004029 ORTHO05D004613 1.0e-41 176.8 141 65.2
GSVIVG01015766001 Vitis vinifera HOM05D004029 ORTHO05D004613 8.8e-41 173.7 109 73.4
GSVIVG01016530001 Vitis vinifera HOM05D004029 ORTHO05D004613 1.3e-39 169.9 109 71.6
Solyc07g063450.3 Solanum lycopersicum HOM05D000461 ORTHO05D001829 1.7e-39 169.5 151 55.0
HPP92_027774 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.1e-38 166.8 107 75.7
Dinv22372 Davidia involucrata HOM05D004029 ORTHO05D004613 5.4e-38 164.5 98 79.6
GSVIVG01005601001 Vitis vinifera HOM05D004029 ORTHO05D004613 5.4e-38 164.5 109 69.7
GSVIVG01006099001 Vitis vinifera HOM05D004029 ORTHO05D004613 5.4e-38 164.5 109 69.7
HPP92_020357 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.7e-36 159.5 120 67.5
GSVIVG01030797001 Vitis vinifera HOM05D004029 ORTHO05D004613 5.0e-36 157.9 109 67.9
Psat7g242400 Pisum sativum HOM05D004029 ORTHO05D004613 3.3e-35 155.2 102 75.5
HPP92_027773 Vanilla planifolia HOM05D004029 ORTHO05D004613 3.3e-35 155.2 98 79.6
Gohir.D11G296250 Gossypium hirsutum HOM05D004029 ORTHO05D004613 7.5e-32 144.1 81 77.8
Haze_01245 Corylus avellana HOM05D007775 ORTHO05D009858 1.8e-30 139.4 133 54.9
SEGI_16455 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 2.0e-29 136.0 78 78.2
Medtr4g126280 Medicago truncatula HOM05D004029 ORTHO05D004613 6.2e-26 124.4 65 83.1
Lsat_1_v5_gn_8_16381 Lactuca sativa HOM05D004029 ORTHO05D004613 2.0e-24 119.4 85 68.2
Lsat_1_v5_gn_6_53560 Lactuca sativa HOM05D004029 ORTHO05D004613 2.9e-23 115.5 109 56.9
Cfa025671 Carpinus fangiana HOM05D004029 ORTHO05D004613 6.6e-20 104.4 582 24.2
CBR_g48013 Chara braunii HOM05D004029 ORTHO05D004613 3.3e-19 102.1 107 46.7
HPP92_020358 Vanilla planifolia HOM05D004029 ORTHO05D004613 4.0e-17 95.1 65 67.7
Psat0ss25761g0120 Pisum sativum HOM05D000735 ORTHO05D004613 8.9e-17 94.0 61 70.5
SEGI_17451 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.5e-16 93.2 62 66.1
MD16G1231300 Malus domestica HOM05D004029 ORTHO05D004613 2.0e-16 92.8 57 73.7
Lsat_1_v5_gn_8_148540 Lactuca sativa HOM05D004029 ORTHO05D004613 9.8e-16 90.5 81 58.0
Lsat_1_v5_gn_4_161921 Lactuca sativa HOM05D004029 ORTHO05D004613 1.0e-12 80.5 99 47.5
CSS0007909 Camellia sinensis var. sinensis HOM05D001136 ORTHO05D004613 8.6e-12 77.4 50 74.0
Pp3c3_4110 Physcomitrium patens HOM05D004029 ORTHO05D004613 1.4e-09 70.1 69 44.9
MBI16_g04070_MAGBIO Magnolia biondii HOM05D005084 ORTHO05D006254 4.4e-08 65.1 52 61.5
ATR0693G070 Amborella trichopoda HOM05D004029 ORTHO05D004613 5.8e-08 64.7 57 54.4
Cre01.g003500 Chlamydomonas reinhardtii HOM05D004029 ORTHO05D004613 1.4e-06 60.1 365 20.0


User provided reference genes

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