Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62029097 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1511.9 735 100.0
AUR62015016 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1469.5 750 95.7
Hund14202 Selenicereus undatus HOM05D003895 ORTHO05D004723 0.0e+00 1294.6 735 84.8
EL10Ac5g12963 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1282.3 706 87.5
MD14G1134200 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1253.0 736 81.7
Eucgr.E01025 Eucalyptus grandis HOM05D003895 ORTHO05D004723 0.0e+00 1251.9 733 81.9
CANSAT54G0301 Cannabis sativa HOM05D003895 ORTHO05D004723 0.0e+00 1250.7 736 81.4
Prupe.5G126000 Prunus persica HOM05D003895 ORTHO05D004723 0.0e+00 1249.6 736 81.0
MD06G1113100 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1248.4 736 80.7
Migut.E00651 Erythranthe guttata HOM05D003895 ORTHO05D004723 0.0e+00 1246.9 735 81.0
RcHm_v2.0_Chr7g0186311 Rosa chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1241.5 736 80.6
CSS0003453 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1241.1 736 81.1
PGR042G2513 Punica granatum HOM05D003895 ORTHO05D004723 0.0e+00 1239.6 736 80.6
FvH4_5g11490 Fragaria vesca HOM05D003895 ORTHO05D004723 0.0e+00 1238.8 734 80.4
QL02p029300 Quercus lobata HOM05D003895 ORTHO05D004723 0.0e+00 1238.8 733 81.4
Cfa011961 Carpinus fangiana HOM05D003895 ORTHO05D004723 0.0e+00 1238.4 736 81.2
FAN18G2619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1237.6 734 80.2
FAN18G3428 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1237.6 734 80.2
Gorai.004G131300 Gossypium raimondii HOM05D003895 ORTHO05D004723 0.0e+00 1237.2 735 80.1
Potri.001G087400 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1237.2 736 80.8
Oeu009988.1 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1236.9 735 79.7
FAN08G0955 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1236.1 737 80.1
Manes.02G005900 Manihot esculenta HOM05D003895 ORTHO05D004723 0.0e+00 1236.1 733 80.4
Potri.003G143700 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1236.1 736 80.7
Rhsim07G0079800 Rhododendron simsii HOM05D003895 ORTHO05D004723 0.0e+00 1236.1 736 80.3
DCAR_006502 Daucus carota HOM05D003895 ORTHO05D004723 0.0e+00 1235.7 734 80.2
Cc05_g02370 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1234.9 736 79.6
Nn3g20296 Nelumbo nucifera HOM05D003895 ORTHO05D004723 0.0e+00 1234.6 735 80.8
Gohir.D08G124600 Gossypium hirsutum HOM05D003895 ORTHO05D004723 0.0e+00 1234.2 735 80.0
Lalb_Chr16g0390761 Lupinus albus HOM05D003895 ORTHO05D004723 0.0e+00 1233.8 735 80.4
FAN04G2440 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1232.6 736 79.8
Solyc08g082830.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 0.0e+00 1230.3 736 79.5
TAR629G1064 Trochodendron aralioides HOM05D003895 ORTHO05D004723 0.0e+00 1230.3 736 80.2
Aqoxy2G01051 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 0.0e+00 1229.5 735 79.7
MSTRG.13762 Avicennia marina HOM05D003895 ORTHO05D004723 0.0e+00 1229.5 735 80.0
Nitab4.5_0002439g0120 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1229.5 736 79.8
CSS0024936 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1229.2 736 80.4
Thecc.03G303200 Theobroma cacao HOM05D003895 ORTHO05D004723 0.0e+00 1227.6 735 79.7
PGSC0003DMG400012128 Solanum tuberosum HOM05D003895 ORTHO05D004723 0.0e+00 1227.2 736 79.3
CAN.G567.61 Capsicum annuum HOM05D003895 ORTHO05D004723 0.0e+00 1225.3 736 79.1
Cc08_g16460 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1225.3 736 79.2
MELO3C005756.2 Cucumis melo HOM05D003895 ORTHO05D004723 0.0e+00 1224.9 735 79.9
TWI60G1173 Tripterygium wilfordii HOM05D003895 ORTHO05D004723 0.0e+00 1224.9 735 80.0
Sabra01G0063700 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1224.5 735 80.3
Ciclev10024991m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1223.8 734 79.2
Duzib068G0704 Durio zibethinus HOM05D003895 ORTHO05D004723 0.0e+00 1223.8 735 79.6
SalBow2G2362 Salvia bowleyana HOM05D003895 ORTHO05D004723 0.0e+00 1223.4 735 79.0
PSO170G0459 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1223.0 737 79.9
ECA240G1010 Erigeron canadensis HOM05D003895 ORTHO05D004723 0.0e+00 1222.2 735 80.1
Actinidia04389 Actinidia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1221.8 735 80.1
Ciclev10019024m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1221.1 734 79.4
CiPaw.11G115900 Carya illinoinensis HOM05D003895 ORTHO05D004723 0.0e+00 1219.5 736 80.2
Lj4g0018300 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1218.8 735 79.2
HanXRQChr06g0166321 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1218.0 735 79.6
THA.LOC104823616 Tarenaya hassleriana HOM05D003895 ORTHO05D004723 0.0e+00 1218.0 735 79.6
Aa31LG2G1550 Aethionema arabicum HOM05D003895 ORTHO05D004723 0.0e+00 1217.2 735 79.2
Sabra03G0104100 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1217.2 778 75.8
Nitab4.5_0002367g0210 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1216.8 728 79.8
BolC6t36080H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1216.4 735 78.6
Ca_17453_v3 Cicer arietinum L. HOM05D003895 ORTHO05D004723 0.0e+00 1216.4 735 79.0
TPR.G3395 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1216.4 735 79.3
Phvul.002G328900 Phaseolus vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1216.1 735 78.9
Glyma.05G219500 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1214.9 735 79.2
HanXRQChr03g0083671 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1213.0 735 80.1
Medtr8g099885 Medicago truncatula HOM05D003895 ORTHO05D004723 0.0e+00 1210.7 735 78.9
Thhalv10011266m.g Eutrema salsugineum HOM05D003895 ORTHO05D004723 0.0e+00 1209.9 735 78.1
C06p10070 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1209.5 735 78.2
BraA06t23255Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1209.5 735 78.4
arahy.Tifrunner.gnm1.ann1.68E5M7 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1208.7 735 78.4
BcaC08g43605 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1208.7 735 78.4
Psat7g023560 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1208.7 735 78.5
A06p00400 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1208.0 735 78.2
Sp1g40750 Schrenkiella parvula HOM05D003895 ORTHO05D004723 0.0e+00 1207.2 735 78.1
BcaB07g33238 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1206.8 735 78.1
Haze_09120 Corylus avellana HOM05D003895 ORTHO05D004723 0.0e+00 1206.8 751 78.7
Sopen08g031060 Solanum pennellii HOM05D003895 ORTHO05D004723 0.0e+00 1205.7 699 81.3
COL.COLO4_10753 Corchorus olitorius HOM05D003895 ORTHO05D004723 0.0e+00 1204.9 735 79.3
Cpa.g.sc15.11 Carica papaya HOM05D003895 ORTHO05D004723 0.0e+00 1204.5 747 77.5
Carub.0001s4358 Capsella rubella HOM05D003895 ORTHO05D004723 0.0e+00 1203.3 735 77.7
Lj4g0016220 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1203.3 735 78.1
TPR.G18245 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1202.6 735 78.8
vmacro13870 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1202.2 778 75.1
VMungo0251G3777 Vigna mungo HOM05D003895 ORTHO05D004723 0.0e+00 1201.4 735 78.4
arahy.Tifrunner.gnm1.ann1.M62N24 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1193.7 726 78.4
BcaB04g17002 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1193.7 735 77.4
GSVIVG01019608001 Vitis vinifera HOM05D003895 ORTHO05D004723 0.0e+00 1193.3 736 78.0
CARHR044680 Cardamine hirsuta HOM05D003895 ORTHO05D004723 0.0e+00 1192.6 735 76.9
vmacro10679 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1191.4 783 73.7
vmacro22441 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1191.4 783 73.7
AT1G55090 Arabidopsis thaliana HOM05D003895 ORTHO05D004723 0.0e+00 1191.0 735 76.9
AL1G63080 Arabidopsis lyrata HOM05D003895 ORTHO05D004723 0.0e+00 1189.5 735 76.6
Sc01g0010470 Simmondsia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1187.2 665 85.1
BcaC01g01456 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1186.4 735 77.0
A08p01020 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1185.6 735 76.6
Oeu059576.4 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1184.5 784 73.9
ClCG01G001820 Citrullus lanatus HOM05D003895 ORTHO05D004723 0.0e+00 1177.5 833 70.6
Lj2C160T5 Lonicera japonica HOM05D003895 ORTHO05D004723 0.0e+00 1160.6 733 76.8
Psat7g023520 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1156.7 732 75.5
PSO339G2482 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1153.7 735 76.1
Peaxi162Scf00074g00431 Petunia axillaris HOM05D003895 ORTHO05D004723 0.0e+00 1153.7 737 76.5
Lsat_1_v5_gn_6_83601 Lactuca sativa HOM05D003895 ORTHO05D004723 0.0e+00 1147.5 735 76.6
C03p92220 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1145.2 747 74.2
BolC3t21537H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1145.2 747 74.3
BraA08t32154Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1145.2 746 74.3
unitig_21.g20891 Utricularia gibba HOM05D003895 ORTHO05D004723 0.0e+00 1144.4 737 74.8
AUR62019884 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1135.2 702 81.5
Zm00001eb094700 Zea mays HOM05D003895 ORTHO05D004723 0.0e+00 1132.5 735 73.3
MBI02_g10555_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 0.0e+00 1129.4 743 72.7
PSO017G1958 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1126.3 737 75.0
EL10Ac5g12472 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1125.9 698 78.5
Ah.12g052950 Amaranthus hybridus HOM05D003895 ORTHO05D004723 0.0e+00 1123.2 752 76.7
Glyma.08G025800 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1122.5 661 80.9
SGA_v2.0_scaffold295G47513 Striga asiatica HOM05D003895 ORTHO05D004723 0.0e+00 1119.0 736 74.5
ATR1098G082 Amborella trichopoda HOM05D003895 ORTHO05D004723 0.0e+00 1112.8 736 73.4
CsaV3_5G001970 Cucumis sativus L. HOM05D003895 ORTHO05D004723 0.0e+00 1107.4 670 79.4
TPR.G3413 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1106.3 723 73.0
HPP92_025338 Vanilla planifolia HOM05D003895 ORTHO05D004723 0.0e+00 1104.0 704 74.4
SEGI_31460 Sequoiadendron giganteum HOM05D003895 ORTHO05D004723 5.0e-312 1074.3 737 70.3
Sed0021355 Sechium edule HOM05D003895 ORTHO05D004723 1.3e-310 1069.3 617 83.0
Hma1.2p1_1835F.1_g304665 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 6.5e-310 1067.0 617 82.8
Dinv34692 Davidia involucrata HOM05D003895 ORTHO05D004723 5.7e-298 1027.3 587 83.1
Manes.02G005800 Manihot esculenta HOM05D003895 ORTHO05D004723 7.0e-296 1020.4 701 70.9
FAN13G0619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 2.2e-294 1015.4 736 68.2
Mapoly0035s0052 Marchantia polymorpha HOM05D003895 ORTHO05D004723 6.3e-281 970.7 738 64.2
CBR_g19728 Chara braunii HOM05D003895 ORTHO05D004723 3.5e-279 964.9 717 65.0
SMO174G0028 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 3.2e-277 958.4 739 62.4
MCO17G006 Micromonas commoda HOM05D003895 ORTHO05D004723 1.7e-254 882.9 692 61.4
AagrBONN_evm.TU.Sc2ySwM_228.4970 Anthoceros agrestis HOM05D003895 ORTHO05D004723 3.3e-253 878.6 658 64.1
Os07g0167100 Oryza sativa ssp. japonica HOM05D003895 ORTHO05D004723 4.4e-250 868.2 569 74.9
Pp3c17_21910 Physcomitrium patens HOM05D003895 ORTHO05D004723 4.9e-249 864.8 669 62.8
SMO358G0326 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 1.1e-248 863.6 703 60.2
Gohir.A08G111660 Gossypium hirsutum HOM05D003895 ORTHO05D004723 5.6e-237 824.7 509 79.0
PRCOL_00000896 Prasinoderma coloniale HOM05D003895 ORTHO05D004723 3.2e-232 808.9 704 56.1
Cre10.g435250 Chlamydomonas reinhardtii HOM05D003895 ORTHO05D004723 6.0e-231 804.7 792 52.9
Migut.E01630 Erythranthe guttata HOM05D003895 ORTHO05D004723 3.5e-215 752.3 509 71.9
Cfa024512 Carpinus fangiana HOM05D003895 ORTHO05D004723 9.7e-205 717.6 713 51.9
Hma1.2p1_0077F.1_g039630 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 1.4e-200 703.7 419 80.0
MBI02_g43672_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 2.3e-174 616.7 424 69.8
AUR62007020 Chenopodium quinoa HOM05D003895 ORTHO05D004723 5.5e-168 595.5 317 93.4
PSO210G1536 Papaver somniferum HOM05D003895 ORTHO05D004723 8.0e-151 538.5 378 68.8
Aqoxy456s001 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 1.7e-145 520.8 303 84.5
MBI05_g40947_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 3.3e-144 516.5 357 71.1
ECA246G1101 Erigeron canadensis HOM05D003895 ORTHO05D004723 2.2e-132 477.2 345 70.4
MBI15_g06349_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.5e-125 454.5 341 66.6
Haze_09105 Corylus avellana HOM05D003895 ORTHO05D004723 5.8e-125 452.6 351 68.9
MBI05_g43497_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 5.1e-113 412.9 284 71.8
SalBow2G1745 Salvia bowleyana HOM05D003895 ORTHO05D004723 9.0e-102 375.6 317 61.5
Gohir.A08G111640 Gossypium hirsutum HOM05D003895 ORTHO05D004723 6.5e-92 342.8 183 82.0
MBI05_g40946_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.2e-90 338.6 209 77.5
Psat7g023400 Pisum sativum HOM05D003895 ORTHO05D004723 8.5e-76 289.3 430 43.5
SalBow2G0791 Salvia bowleyana HOM05D003895 ORTHO05D004723 3.1e-70 270.8 168 71.4
BcaB04g17000 Brassica carinata HOM05D003895 ORTHO05D004723 1.6e-66 258.5 222 60.4
SalBow2G2695 Salvia bowleyana HOM05D003895 ORTHO05D004723 5.7e-64 250.0 208 60.6
arahy.Tifrunner.gnm1.ann1.RT27P1 Arachis hypogaea HOM05D003895 ORTHO05D004723 7.0e-62 243.0 355 42.8
BcaB04g16999 Brassica carinata HOM05D003895 ORTHO05D004723 3.8e-60 237.3 204 60.3
AagrBONN_evm.TU.Sc2ySwM_228.4951 Anthoceros agrestis HOM05D003895 ORTHO05D004723 5.7e-48 196.8 219 45.7
DCAR_006503 Daucus carota HOM05D001368 ORTHO05D003846 1.2e-45 189.1 202 53.5
BcaB05g22068 Brassica carinata HOM05D003895 ORTHO05D004723 1.6e-45 188.7 131 66.4
BcaB01g00975 Brassica carinata HOM05D003895 ORTHO05D004723 1.6e-42 178.7 101 79.2
BcaB04g17001 Brassica carinata HOM05D003895 ORTHO05D004723 5.2e-41 173.7 208 49.0
BcaB01g02352 Brassica carinata HOM05D003895 ORTHO05D004723 3.4e-32 144.4 136 53.7
BcaC01g01457 Brassica carinata HOM05D003895 ORTHO05D004723 1.7e-28 132.1 110 57.3
Sopen06g027550 Solanum pennellii HOM05D003895 ORTHO05D004723 8.9e-25 119.8 161 45.3
CARHR106400 Cardamine hirsuta HOM05D003895 ORTHO05D004723 4.9e-23 114.0 185 39.5
CARHR260480 Cardamine hirsuta HOM05D003895 ORTHO05D004723 1.4e-22 112.5 185 38.9
Nitab4.5_0000974g0050 Nicotiana tabacum HOM05D003895 ORTHO05D285369 1.4e-22 112.5 108 55.6
MBI15_g06350_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 5.4e-22 110.5 63 74.6
Lj4g0022111 Lotus japonicus HOM05D019175 ORTHO05D018974 9.2e-22 109.8 60 88.3
Solyc06g071240.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 2.1e-18 98.6 130 47.7
CAN.G628.62 Capsicum annuum HOM05D003895 ORTHO05D004723 8.1e-18 96.7 110 50.9
BcaB04g16998 Brassica carinata HOM05D003895 ORTHO05D004723 5.2e-17 94.0 50 82.0
Nitab4.5_0001308g0060 Nicotiana tabacum HOM05D003895 ORTHO05D282403 1.5e-16 92.4 111 46.8
BcaC01g01459 Brassica carinata HOM05D003895 ORTHO05D004723 7.3e-11 73.6 75 50.7
BcaC01g01463 Brassica carinata HOM05D003895 ORTHO05D004723 9.6e-11 73.2 74 51.4
Nitab4.5_0004376g0060 Nicotiana tabacum HOM05D003895 ORTHO05D286866 9.6e-11 73.2 50 74.0
Nitab4.5_0000050g0220 Nicotiana tabacum HOM05D003895 ORTHO05D285100 1.7e-07 62.4 44 77.3
PGSC0003DMG400033059 Solanum tuberosum HOM05D003895 ORTHO05D004723 2.9e-07 61.6 40 65.0
Medtr3g108170 Medicago truncatula HOM05D003895 ORTHO05D260611 8.4e-07 60.1 118 40.7
Glyma.17G110701 Glycine max HOM05D003895 ORTHO05D004723 2.4e-06 58.5 34 82.4


User provided reference genes

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