Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62028936 Chenopodium quinoa HOM05D002335 ORTHO05D006692 8.7e-113 410.2 193 100.0
AUR62025248 Chenopodium quinoa HOM05D002335 ORTHO05D006692 2.8e-111 405.2 193 99.0
EL10Ac8g19062 Beta vulgaris HOM05D002335 ORTHO05D006692 1.6e-95 352.8 189 84.7
Sc18g0002530 Simmondsia chinensis HOM05D002335 ORTHO05D006692 2.2e-92 342.4 189 81.5
Hund26036 Selenicereus undatus HOM05D002335 ORTHO05D006692 5.5e-91 337.8 189 82.0
Ciclev10009634m.g Citrus clementina HOM05D002335 ORTHO05D006692 3.9e-89 331.6 181 81.8
TWI34G0950 Tripterygium wilfordii HOM05D002335 ORTHO05D006692 1.9e-88 329.3 176 85.2
Potri.018G065800 Populus trichocarpa HOM05D002335 ORTHO05D006692 2.8e-87 325.5 179 83.2
CSS0035766 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 4.8e-87 324.7 179 81.6
CSS0046237 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 4.8e-87 324.7 179 81.6
QL11p000707 Quercus lobata HOM05D002335 ORTHO05D006692 8.2e-87 323.9 188 78.2
Cpa.g.sc28.42 Carica papaya HOM05D002335 ORTHO05D006692 1.8e-86 322.8 193 77.7
COL.COLO4_18100 Corchorus olitorius HOM05D002335 ORTHO05D006692 6.9e-86 320.9 194 77.8
Gohir.A06G076400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 6.9e-86 320.9 177 82.5
Manes.03G040300 Manihot esculenta HOM05D002335 ORTHO05D006692 1.2e-85 320.1 179 81.6
Eucgr.C03267 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.5e-85 319.7 186 78.0
Peaxi162Scf00127g00206 Petunia axillaris HOM05D002335 ORTHO05D006692 3.4e-85 318.5 175 80.0
Potri.006G142000 Populus trichocarpa HOM05D002335 ORTHO05D006692 3.4e-85 318.5 179 81.0
CiPaw.04G143300 Carya illinoinensis HOM05D002335 ORTHO05D006692 4.5e-85 318.2 184 79.3
Hma1.2p1_0169F.1_g074550 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 4.5e-85 318.2 183 78.1
Hma1.2p1_0169F.1_g074601 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 4.5e-85 318.2 183 78.1
BcaC06g35951 Brassica carinata HOM05D002335 ORTHO05D006692 5.8e-85 317.8 182 78.0
GSVIVG01015085001 Vitis vinifera HOM05D002335 ORTHO05D006692 5.8e-85 317.8 179 79.3
Actinidia29931 Actinidia chinensis HOM05D002335 ORTHO05D006692 7.6e-85 317.4 186 77.4
Thhalv10008863m.g Eutrema salsugineum HOM05D002335 ORTHO05D006692 7.6e-85 317.4 184 76.6
Gorai.010G088300 Gossypium raimondii HOM05D002335 ORTHO05D006692 7.6e-85 317.4 177 81.9
Sopen12g004030 Solanum pennellii HOM05D002335 ORTHO05D006692 7.6e-85 317.4 175 80.0
Aa31sc133G40 Aethionema arabicum HOM05D002335 ORTHO05D006692 1.0e-84 317.0 184 76.6
Eucgr.C03340 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.0e-84 317.0 186 77.4
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 1.3e-84 316.6 182 78.6
Glyma.17G049400 Glycine max HOM05D002335 ORTHO05D006692 1.3e-84 316.6 186 76.3
Cfa002991 Carpinus fangiana HOM05D002335 ORTHO05D006692 1.7e-84 316.2 184 76.1
Eucgr.C03511 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.7e-84 316.2 186 76.9
Solyc07g041780.3 Solanum lycopersicum HOM05D002335 ORTHO05D006692 2.9e-84 315.5 175 80.6
Migut.L01564 Erythranthe guttata HOM05D002335 ORTHO05D006692 3.8e-84 315.1 188 75.5
SalBow5G0979 Salvia bowleyana HOM05D002335 ORTHO05D006692 3.8e-84 315.1 185 75.1
SalBow5G2105 Salvia bowleyana HOM05D002335 ORTHO05D006692 3.8e-84 315.1 185 75.1
BcaB06g26882 Brassica carinata HOM05D002335 ORTHO05D006692 4.9e-84 314.7 182 77.5
Haze_26010 Corylus avellana HOM05D002335 ORTHO05D006692 4.9e-84 314.7 181 76.8
Eucgr.C03501 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.9e-84 314.7 186 76.9
RcHm_v2.0_Chr2g0094901 Rosa chinensis HOM05D002335 ORTHO05D006692 4.9e-84 314.7 179 77.7
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 8.4e-84 313.9 179 78.2
Lj4g0006964 Lotus japonicus HOM05D002335 ORTHO05D006692 8.4e-84 313.9 182 77.5
Oeu049119.1 Olea europaea HOM05D002335 ORTHO05D006692 8.4e-84 313.9 186 75.3
AT2G06010 Arabidopsis thaliana HOM05D002335 ORTHO05D006692 1.1e-83 313.5 184 75.5
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 1.1e-83 313.5 176 79.5
Carub.0003s2714 Capsella rubella HOM05D002335 ORTHO05D006692 1.1e-83 313.5 184 75.0
Dinv25560 Davidia involucrata HOM05D002335 ORTHO05D006692 1.1e-83 313.5 176 79.5
Eucgr.C03348 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.1e-83 313.5 186 76.3
Nn6g35620 Nelumbo nucifera HOM05D002335 ORTHO05D006692 1.1e-83 313.5 179 77.7
PGSC0003DMG400013000 Solanum tuberosum HOM05D002335 ORTHO05D006692 1.1e-83 313.5 175 80.0
Glyma.13G110300 Glycine max HOM05D002335 ORTHO05D006692 1.9e-83 312.8 178 78.7
Phvul.003G130900 Phaseolus vulgaris HOM05D002335 ORTHO05D006692 1.9e-83 312.8 182 78.0
Prupe.7G199200 Prunus persica HOM05D002335 ORTHO05D006692 1.9e-83 312.8 178 78.1
TAR626G0579 Trochodendron aralioides HOM05D002335 ORTHO05D006692 2.5e-83 312.4 178 77.0
MSTRG.10511 Avicennia marina HOM05D002335 ORTHO05D006692 3.2e-83 312.0 183 74.9
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 3.2e-83 312.0 176 79.0
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 3.2e-83 312.0 176 79.0
SGA_v2.0_scaffold308G48074 Striga asiatica HOM05D002335 ORTHO05D006692 4.2e-83 311.6 180 76.7
THA.LOC104826590 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 4.2e-83 311.6 178 77.5
AL3G43590 Arabidopsis lyrata HOM05D002335 ORTHO05D006692 5.5e-83 311.2 184 75.0
Eucgr.H02780 Eucalyptus grandis HOM05D002335 ORTHO05D006692 9.3e-83 310.5 186 75.3
Sopen07g021270 Solanum pennellii HOM05D002335 ORTHO05D006692 9.3e-83 310.5 175 80.0
PGR044G0908 Punica granatum HOM05D002335 ORTHO05D006692 1.6e-82 309.7 178 75.3
Sp3g24590 Schrenkiella parvula HOM05D002335 ORTHO05D006692 1.6e-82 309.7 182 75.3
Aqoxy7G04078 Aquilegia oxysepala HOM05D002335 ORTHO05D006692 2.7e-82 308.9 186 73.1
CARHR103670 Cardamine hirsuta HOM05D002335 ORTHO05D006692 2.7e-82 308.9 178 76.4
CsaV3_1G041010 Cucumis sativus L. HOM05D002335 ORTHO05D006692 2.7e-82 308.9 179 76.5
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 6.1e-82 307.8 180 77.2
ClCG03G015100 Citrullus lanatus HOM05D002335 ORTHO05D006692 1.0e-81 307.0 179 75.4
MELO3C015519.2 Cucumis melo HOM05D002335 ORTHO05D006692 1.3e-81 306.6 179 76.0
CANSAT56G4475 Cannabis sativa HOM05D002335 ORTHO05D006692 2.3e-81 305.8 172 78.5
VMungo1215G3327 Vigna mungo HOM05D002335 ORTHO05D006692 5.1e-81 304.7 186 75.3
FvH4_1g08630 Fragaria vesca HOM05D002335 ORTHO05D006692 6.7e-81 304.3 189 73.0
PGSC0003DMG400000324 Solanum tuberosum HOM05D002335 ORTHO05D006692 6.7e-81 304.3 195 71.3
Psat4g017640 Pisum sativum HOM05D002335 ORTHO05D006692 8.7e-81 303.9 188 72.9
PGR044G2482 Punica granatum HOM05D002335 ORTHO05D006692 8.7e-81 303.9 178 74.7
MD15G1217300 Malus domestica HOM05D002335 ORTHO05D006692 1.9e-80 302.8 179 77.1
THA.LOC104815332 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 1.9e-80 302.8 179 76.5
Sed0014235 Sechium edule HOM05D002335 ORTHO05D006692 9.7e-80 300.4 179 74.3
FAN28G2258 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.3e-79 300.1 188 72.3
FAN23G0492 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.6e-79 299.7 188 72.3
MD02G1091100 Malus domestica HOM05D002335 ORTHO05D006692 1.6e-79 299.7 176 77.3
DCAR_024750 Daucus carota HOM05D002335 ORTHO05D006692 2.8e-79 298.9 182 71.4
DCAR_031919 Daucus carota HOM05D002335 ORTHO05D006692 2.8e-79 298.9 182 71.4
Lalb_Chr12g0200131 Lupinus albus HOM05D002335 ORTHO05D006692 2.8e-79 298.9 179 76.0
Sed0016579 Sechium edule HOM05D002335 ORTHO05D006692 3.7e-79 298.5 179 73.7
vmacro17199 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 3.7e-79 298.5 208 66.3
PSO135G0567 Papaver somniferum HOM05D002335 ORTHO05D006692 4.1e-78 295.0 179 74.3
FAN19G2961 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.0e-76 290.4 210 65.2
Rhsim05G0007700 Rhododendron simsii HOM05D002335 ORTHO05D006692 6.5e-76 287.7 161 78.9
Eucgr.C03331 Eucalyptus grandis HOM05D002335 ORTHO05D006692 9.4e-75 283.9 162 78.4
vmacro06340 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 1.6e-74 283.1 189 69.3
Thecc.09G077400 Theobroma cacao HOM05D002335 ORTHO05D006692 2.7e-74 282.3 153 83.7
HanXRQChr03g0060151 Helianthus annuus HOM05D002335 ORTHO05D006692 2.3e-73 279.3 163 79.1
FAN26G1566 Fragaria x ananassa HOM05D002335 ORTHO05D006692 3.0e-73 278.9 231 58.9
FAN26G0120 Fragaria x ananassa HOM05D002335 ORTHO05D006692 3.9e-73 278.5 231 58.4
Cc06_g12140 Coffea canephora HOM05D002335 ORTHO05D006692 1.5e-72 276.6 150 80.0
CDE05G1851 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 3.3e-72 275.4 179 70.4
MBI13_g42820_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 4.8e-71 271.6 176 68.2
MBI19_g11823_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 1.2e-69 266.9 175 69.1
MBI19_g37791_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 1.2e-69 266.9 175 69.1
arahy.Tifrunner.gnm1.ann1.0T42SY Arachis hypogaea HOM05D002335 ORTHO05D006692 3.4e-69 265.4 183 68.3
Zm00001eb081660 Zea mays HOM05D002335 ORTHO05D006692 3.4e-69 265.4 179 65.4
Sabra06G0111100 Salix brachista HOM05D002335 ORTHO05D006692 1.3e-68 263.5 150 80.0
arahy.Tifrunner.gnm1.ann1.U5UTMI Arachis hypogaea HOM05D002335 ORTHO05D006692 2.9e-68 262.3 183 67.8
Solyc12g009080.2 Solanum lycopersicum HOM05D002335 ORTHO05D006692 5.0e-68 261.5 147 76.9
CAN.G1963.2 Capsicum annuum HOM05D002335 ORTHO05D006692 1.9e-67 259.6 147 74.8
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 1.9e-67 259.6 164 73.2
ATR0598G258 Amborella trichopoda HOM05D002335 ORTHO05D006692 3.2e-67 258.8 176 64.8
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 1.0e-65 253.8 154 74.0
CDE11G0744 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 5.1e-65 251.5 202 60.4
Rhsim03G0227700 Rhododendron simsii HOM05D002335 ORTHO05D006692 5.1e-65 251.5 267 50.2
unitig_8.g3530 Utricularia gibba HOM05D002335 ORTHO05D006692 5.1e-65 251.5 182 61.5
TPR.G12576 Trifolium pratense HOM05D002335 ORTHO05D006692 4.4e-64 248.4 184 63.0
Ca_21321_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006692 2.8e-63 245.7 148 71.6
Nitab4.5_0000073g0180 Nicotiana tabacum HOM05D002335 ORTHO05D006692 7.0e-62 241.1 144 72.9
Medtr4g125360 Medicago truncatula HOM05D002335 ORTHO05D006692 1.0e-60 237.3 140 74.3
Peaxi162Scf00928g00035 Petunia axillaris HOM05D002335 ORTHO05D006692 3.8e-60 235.3 176 62.5
Mapoly0146s0032 Marchantia polymorpha HOM05D002335 ORTHO05D006692 6.7e-57 224.6 174 55.7
Ah.09g231610 Amaranthus hybridus HOM05D002335 ORTHO05D006692 4.4e-56 221.9 211 55.9
unitig_899.g15177 Utricularia gibba HOM05D002335 ORTHO05D006692 2.8e-55 219.2 165 60.6
Eucgr.C03278 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.7e-55 218.8 118 81.4
Lj7A687T54 Lonicera japonica HOM05D002335 ORTHO05D006692 5.9e-53 211.5 190 58.9
HPP92_013380 Vanilla planifolia HOM05D002335 ORTHO05D006692 1.0e-52 210.7 143 63.6
Gohir.D06G075400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 5.5e-51 204.9 175 58.9
AagrBONN_evm.TU.Sc2ySwM_368.225 Anthoceros agrestis HOM05D002335 ORTHO05D006692 5.2e-49 198.4 193 47.7
SMO361G0221 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 3.4e-48 195.7 172 50.0
SMO361G0519 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 3.4e-48 195.7 172 50.0
Nitab4.5_0011754g0020 Nicotiana tabacum HOM05D002335 ORTHO05D006692 1.1e-43 180.6 184 54.9
Nitab4.5_0002966g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006692 1.9e-43 179.9 91 87.9
Eucgr.L03294 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.2e-40 170.6 141 58.9
AagrBONN_evm.TU.Sc2ySwM_368.521 Anthoceros agrestis HOM05D002335 ORTHO05D006692 7.5e-40 167.9 203 38.4
SEGI_04946 Sequoiadendron giganteum HOM05D002335 ORTHO05D006692 9.8e-40 167.5 119 64.7
Eucgr.C03281 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.9e-39 165.2 88 81.8
Pp3c2_1630 Physcomitrium patens HOM05D002335 ORTHO05D006692 6.3e-39 164.9 170 44.7
Pp3c14_25980 Physcomitrium patens HOM05D002335 ORTHO05D006692 4.5e-37 158.7 181 39.8
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 5.9e-37 158.3 163 47.2
CBR_g38469 Chara braunii HOM05D002335 ORTHO05D006692 1.5e-35 153.7 166 42.8
Eucgr.C03513 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.0e-33 147.5 147 51.7
HPP92_013382 Vanilla planifolia HOM05D002335 ORTHO05D006692 4.9e-31 138.7 93 63.4
Os04g0446200 Oryza sativa ssp. japonica HOM05D002335 ORTHO05D006692 1.5e-27 127.1 87 63.2
vmacro17200 Vaccinium macrocarpon HOM05D001119 ORTHO05D000862 2.8e-10 69.7 39 74.4
Thecc.09G077100 Theobroma cacao HOM05D001119 ORTHO05D000862 8.1e-10 68.2 39 76.9
Nn6g32302 Nelumbo nucifera HOM05D002335 ORTHO05D006692 1.9e-06 57.0 39 66.7
Actinidia38479 Actinidia chinensis HOM05D002335 ORTHO05D006692 4.1e-06 55.8 36 72.2


User provided reference genes

Program Settings