Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62028903 Chenopodium quinoa HOM05D001361 ORTHO05D005105 1.7e-152 542.7 296 100.0
AUR62005647 Chenopodium quinoa HOM05D001361 ORTHO05D005105 3.4e-76 289.3 180 90.0
EL10Ac6g15295 Beta vulgaris HOM05D001361 ORTHO05D005105 5.5e-74 282.0 363 55.1
Ah.02g130800 Amaranthus hybridus HOM05D001361 ORTHO05D005105 7.9e-73 278.1 368 52.2
EL10Ac6g13534 Beta vulgaris HOM05D001361 ORTHO05D005105 1.3e-56 224.2 289 54.3
Sc04g0010260 Simmondsia chinensis HOM05D001361 ORTHO05D005105 1.6e-49 200.7 368 43.8
Hund25479 Selenicereus undatus HOM05D001361 ORTHO05D005105 1.0e-43 181.4 325 44.3
Hma1.2p1_0065F.1_g035150 Hydrangea macrophylla HOM05D001361 ORTHO05D005105 7.7e-36 155.2 358 37.7
TAR629G2391 Trochodendron aralioides HOM05D001361 ORTHO05D005105 2.5e-34 150.2 358 34.1
Actinidia39801 Actinidia chinensis HOM05D001361 ORTHO05D005105 6.1e-33 145.6 355 34.6
Dinv17585 Davidia involucrata HOM05D001361 ORTHO05D005105 8.0e-33 145.2 356 35.7
Thecc.02G202500 Theobroma cacao HOM05D001361 ORTHO05D005105 5.2e-32 142.5 294 37.8
TAR371G0443 Trochodendron aralioides HOM05D001361 ORTHO05D005105 2.0e-31 140.6 277 36.8
Dinv11687 Davidia involucrata HOM05D005577 ORTHO05D006941 2.6e-31 140.2 361 34.3
Actinidia30631 Actinidia chinensis HOM05D001361 ORTHO05D005105 1.3e-30 137.9 354 35.0
Nn3g16410 Nelumbo nucifera HOM05D001361 ORTHO05D005105 2.8e-30 136.7 368 34.0
Solyc05g015820.4 Solanum lycopersicum HOM05D001361 ORTHO05D005105 2.8e-30 136.7 311 35.4
Sopen05g011440 Solanum pennellii HOM05D001361 ORTHO05D005105 4.8e-30 136.0 311 35.4
Nn4g22268 Nelumbo nucifera HOM05D001361 ORTHO05D005105 8.2e-30 135.2 361 34.3
Duzib251G0004 Durio zibethinus HOM05D001361 ORTHO05D005105 1.1e-29 134.8 312 35.9
SGA_v2.0_scaffold7G04048 Striga asiatica HOM05D001361 ORTHO05D005105 1.8e-29 134.0 339 31.6
SGA_v2.0_scaffold114G31917 Striga asiatica HOM05D001361 ORTHO05D005105 3.1e-29 133.3 336 35.7
GSVIVG01010524001 Vitis vinifera HOM05D001361 ORTHO05D005105 4.1e-29 132.9 354 34.5
Gorai.012G180700 Gossypium raimondii HOM05D001361 ORTHO05D005105 5.3e-29 132.5 301 37.2
Gohir.D04G187700 Gossypium hirsutum HOM05D001361 ORTHO05D005105 1.2e-28 131.3 301 36.9
CDE02G3199 Ceratophyllum demersum HOM05D001361 ORTHO05D005105 3.5e-28 129.8 317 36.9
Nitab4.5_0008235g0020 Nicotiana tabacum HOM05D001361 ORTHO05D005105 4.5e-28 129.4 358 32.7
Peaxi162Scf00128g01540 Petunia axillaris HOM05D001361 ORTHO05D005105 1.0e-27 128.3 353 33.1
MSTRG.8019 Avicennia marina HOM05D001361 ORTHO05D005105 1.7e-27 127.5 299 34.8
Gohir.A04G141200 Gossypium hirsutum HOM05D001361 ORTHO05D005105 1.7e-27 127.5 297 36.7
CiPaw.05G107400 Carya illinoinensis HOM05D001361 ORTHO05D005105 2.2e-27 127.1 252 36.1
Cfa009384 Carpinus fangiana HOM05D001361 ORTHO05D005105 6.5e-27 125.6 369 32.5
Migut.K00986 Erythranthe guttata HOM05D001361 ORTHO05D005105 6.5e-27 125.6 343 33.8
ECA233G0246 Erigeron canadensis HOM05D005577 ORTHO05D006941 8.5e-27 125.2 311 35.7
HanXRQChr12g0361331 Helianthus annuus HOM05D001361 ORTHO05D005105 5.5e-26 122.5 304 34.9
Nitab4.5_0010664g0010 Nicotiana tabacum HOM05D001361 ORTHO05D005105 5.5e-26 122.5 240 37.5
CDE05G0317 Ceratophyllum demersum HOM05D001361 ORTHO05D005105 1.6e-25 120.9 349 32.4
Manes.12G008800 Manihot esculenta HOM05D001361 ORTHO05D005105 1.6e-25 120.9 308 34.1
Atru.chr11.2355 Acer truncatum HOM05D001361 ORTHO05D005105 1.8e-24 117.5 322 32.3
MSTRG.486 Avicennia marina HOM05D001361 ORTHO05D005105 6.8e-24 115.5 357 31.4
CAN.G1358.16 Capsicum annuum HOM05D001361 ORTHO05D005105 8.8e-24 115.2 313 33.2
Lsat_1_v5_gn_3_31340 Lactuca sativa HOM05D001361 ORTHO05D005105 1.2e-23 114.8 320 33.4
Potri.003G169200 Populus trichocarpa HOM05D001361 ORTHO05D005105 2.6e-23 113.6 340 33.5
PGR102G1867 Punica granatum HOM05D001361 ORTHO05D005105 3.4e-23 113.2 291 35.4
MD16G1122300 Malus domestica HOM05D001361 ORTHO05D005105 4.4e-23 112.8 260 34.6
AL1G40660 Arabidopsis lyrata HOM05D001361 ORTHO05D005105 5.7e-23 112.5 309 33.0
TWI36G1404 Tripterygium wilfordii HOM05D001361 ORTHO05D005105 5.7e-23 112.5 319 34.2
Duzib248G0082 Durio zibethinus HOM05D001361 ORTHO05D005105 7.5e-23 112.1 316 33.5
Sp1g23500 Schrenkiella parvula HOM05D001361 ORTHO05D005105 7.5e-23 112.1 310 32.9
HanXRQChr06g0174761 Helianthus annuus HOM05D001361 ORTHO05D005105 1.7e-22 110.9 317 33.1
Lalb_Chr10g0092051 Lupinus albus HOM05D001361 ORTHO05D005105 1.7e-22 110.9 254 33.5
A09p38680 Brassica napus HOM05D001361 ORTHO05D005105 2.2e-22 110.5 310 31.3
Cc11_g17160 Coffea canephora HOM05D001361 ORTHO05D005105 2.8e-22 110.2 367 28.3
HanXRQChr05g0128771 Helianthus annuus HOM05D001361 ORTHO05D005105 4.8e-22 109.4 344 30.2
Lalb_Chr17g0336401 Lupinus albus HOM05D001361 ORTHO05D005105 4.8e-22 109.4 311 31.5
C05p25950 Brassica napus HOM05D001361 ORTHO05D005105 1.4e-21 107.8 310 31.3
Carub.0001s2579 Capsella rubella HOM05D001361 ORTHO05D005105 1.8e-21 107.5 293 33.1
Duzib268G1250 Durio zibethinus HOM05D001361 ORTHO05D005105 1.8e-21 107.5 346 32.4
Aqoxy5G03301 Aquilegia oxysepala HOM05D001361 ORTHO05D005105 3.1e-21 106.7 360 33.1
MD13G1122000 Malus domestica HOM05D001361 ORTHO05D005105 3.1e-21 106.7 259 34.4
Glyma.08G259700 Glycine max HOM05D001361 ORTHO05D005105 4.1e-21 106.3 295 32.9
TWI75G0976 Tripterygium wilfordii HOM05D001361 ORTHO05D005105 4.1e-21 106.3 281 34.9
BcaC05g26539 Brassica carinata HOM05D001361 ORTHO05D005105 7.0e-21 105.5 310 31.0
Gohir.D02G146800 Gossypium hirsutum HOM05D001361 ORTHO05D005105 1.2e-20 104.8 314 31.5
Lj6A829G28 Lonicera japonica HOM05D001361 ORTHO05D005105 1.6e-20 104.4 318 33.6
Sabra03G0124100 Salix brachista HOM05D005577 ORTHO05D006941 1.6e-20 104.4 173 41.0
BcaB03g12068 Brassica carinata HOM05D001361 ORTHO05D005105 5.9e-20 102.4 310 30.0
CDE05G1789 Ceratophyllum demersum HOM05D001361 ORTHO05D005105 5.9e-20 102.4 104 53.8
Gorai.005G164400 Gossypium raimondii HOM05D001361 ORTHO05D005105 5.9e-20 102.4 313 31.0
THA.LOC104825490 Tarenaya hassleriana HOM05D001361 ORTHO05D005105 1.0e-19 101.7 319 32.3
RcHm_v2.0_Chr4g0429881 Rosa chinensis HOM05D001361 ORTHO05D005105 1.7e-19 100.9 293 33.4
Potri.001G058700 Populus trichocarpa HOM05D001361 ORTHO05D005105 2.3e-19 100.5 349 31.8
AT1G24267 Arabidopsis thaliana HOM05D001361 ORTHO05D005105 2.9e-19 100.1 313 31.6
BcaC05g26733 Brassica carinata HOM05D001361 ORTHO05D005105 2.9e-19 100.1 310 30.3
Phvul.008G017700 Phaseolus vulgaris HOM05D001361 ORTHO05D005105 3.8e-19 99.8 254 31.9
BolC5t31314H Brassica oleracea HOM05D001361 ORTHO05D005105 6.5e-19 99.0 313 30.7
THA.LOC104807139 Tarenaya hassleriana HOM05D001361 ORTHO05D005105 6.5e-19 99.0 344 32.6
ClCG06G002090 Citrullus lanatus HOM05D001361 ORTHO05D005105 1.1e-18 98.2 271 34.7
DCAR_024667 Daucus carota HOM05D001361 ORTHO05D005105 1.1e-18 98.2 321 32.4
Glyma.18G283800 Glycine max HOM05D001361 ORTHO05D005105 2.5e-18 97.1 254 31.9
Cpa.g.sc200.23 Carica papaya HOM05D001361 ORTHO05D005105 3.2e-18 96.7 323 30.7
CANSAT01G0548 Cannabis sativa HOM05D001361 ORTHO05D005105 4.2e-18 96.3 291 30.6
BcaC01g01627 Brassica carinata HOM05D001361 ORTHO05D005105 5.5e-18 95.9 298 29.9
C03p73600 Brassica napus HOM05D001361 ORTHO05D005105 5.5e-18 95.9 298 29.9
Carub.0001s2580 Capsella rubella HOM05D001361 ORTHO05D005105 5.5e-18 95.9 298 29.5
Ciclev10031908m.g Citrus clementina HOM05D001361 ORTHO05D005105 5.5e-18 95.9 313 32.9
Sabra01G0042200 Salix brachista HOM05D001361 ORTHO05D005105 5.5e-18 95.9 105 54.3
CARHR026840 Cardamine hirsuta HOM05D001361 ORTHO05D005105 7.2e-18 95.5 300 31.0
vmacro01051 Vaccinium macrocarpon HOM05D001361 ORTHO05D005105 7.2e-18 95.5 91 56.0
C05p25960 Brassica napus HOM05D001361 ORTHO05D005105 9.5e-18 95.1 302 31.8
FvH4_4g23490 Fragaria vesca HOM05D001361 ORTHO05D005105 9.5e-18 95.1 298 31.9
Prupe.1G223300 Prunus persica HOM05D001361 ORTHO05D005105 1.2e-17 94.7 295 33.6
unitig_747.g21121 Utricularia gibba HOM05D001361 ORTHO05D005105 1.2e-17 94.7 281 31.0
Actinidia08055 Actinidia chinensis HOM05D001361 ORTHO05D005105 1.6e-17 94.4 85 57.6
Lj5g0005237 Lotus japonicus HOM05D001361 ORTHO05D005105 4.7e-17 92.8 360 30.6
BolC3t19653H Brassica oleracea HOM05D001361 ORTHO05D005105 6.1e-17 92.4 302 30.1
BraA08t34597Z Brassica rapa HOM05D001361 ORTHO05D005105 6.1e-17 92.4 301 30.6
Peaxi162Scf00023g02226 Petunia axillaris HOM05D001361 ORTHO05D005105 6.1e-17 92.4 356 30.1
Rhsim12G0024000 Rhododendron simsii HOM05D001361 ORTHO05D005105 6.1e-17 92.4 87 56.3
BraA09t39376Z Brassica rapa HOM05D001361 ORTHO05D005105 8.0e-17 92.0 317 30.0
Gohir.A03G124400 Gossypium hirsutum HOM05D001361 ORTHO05D005105 1.0e-16 91.7 314 29.9
SalBow1G2500 Salvia bowleyana HOM05D001361 ORTHO05D005105 1.0e-16 91.7 81 56.8
CSS0035859 Camellia sinensis var. sinensis HOM05D001361 ORTHO05D005105 1.4e-16 91.3 122 43.4
Thhalv10008045m.g Eutrema salsugineum HOM05D001361 ORTHO05D005105 1.8e-16 90.9 303 28.7
AT1G24265 Arabidopsis thaliana HOM05D001361 ORTHO05D005105 4.0e-16 89.7 310 29.4
CARHR026830 Cardamine hirsuta HOM05D001361 ORTHO05D005105 5.2e-16 89.4 297 29.3
Eucgr.B03519 Eucalyptus grandis HOM05D001361 ORTHO05D005105 5.2e-16 89.4 291 32.0
ECA246G4360 Erigeron canadensis HOM05D001361 ORTHO05D005105 8.8e-16 88.6 323 30.3
arahy.Tifrunner.gnm1.ann1.M9HGBQ Arachis hypogaea HOM05D001361 ORTHO05D005105 1.2e-15 88.2 160 38.1
arahy.Tifrunner.gnm1.ann1.WMQ7N5 Arachis hypogaea HOM05D001361 ORTHO05D005105 1.2e-15 88.2 160 38.1
Aa31LG7G9940 Aethionema arabicum HOM05D001361 ORTHO05D005105 1.5e-15 87.8 305 28.5
FAN12G2218 Fragaria x ananassa HOM05D001361 ORTHO05D005105 1.5e-15 87.8 297 29.3
Aa31LG7G9930 Aethionema arabicum HOM05D001361 ORTHO05D005105 2.6e-15 87.0 285 29.8
Sp1g23510 Schrenkiella parvula HOM05D001361 ORTHO05D005105 2.6e-15 87.0 297 30.0
A08p26450 Brassica napus HOM05D001361 ORTHO05D005105 4.4e-15 86.3 257 28.8
Ca_07127_v3 Cicer arietinum L. HOM05D001361 ORTHO05D005105 9.8e-15 85.1 85 50.6
BcaC05g26540 Brassica carinata HOM05D001361 ORTHO05D005105 1.7e-14 84.3 307 30.9
TPR.G2940 Trifolium pratense HOM05D001361 ORTHO05D005105 1.7e-14 84.3 85 47.1
BraA09t39375Z Brassica rapa HOM05D001361 ORTHO05D005105 3.7e-14 83.2 314 29.9
Thhalv10008078m.g Eutrema salsugineum HOM05D001361 ORTHO05D005105 2.4e-13 80.5 82 48.8
Oeu006513.1 Olea europaea HOM05D001361 ORTHO05D005105 3.1e-13 80.1 165 35.2
A09p38670 Brassica napus HOM05D001361 ORTHO05D005105 7.0e-13 79.0 287 31.0
SGA_v2.0_scaffold258G45786 Striga asiatica HOM05D001361 ORTHO05D005105 9.2e-13 78.6 77 53.2
AL1G40670 Arabidopsis lyrata HOM05D001361 ORTHO05D005105 1.2e-12 78.2 314 27.4
PSO017G4710 Papaver somniferum HOM05D001361 ORTHO05D005105 1.2e-12 78.2 260 29.6
BolC5t31315H Brassica oleracea HOM05D001361 ORTHO05D005105 2.0e-12 77.4 316 29.1
Zm00001eb285600 Zea mays HOM05D001361 ORTHO05D005105 2.0e-12 77.4 338 25.7
Psat3g188120 Pisum sativum HOM05D001361 ORTHO05D005105 2.7e-12 77.0 223 26.9
HPP92_008062 Vanilla planifolia HOM05D001361 ORTHO05D005105 3.5e-12 76.6 351 28.8
Medtr7g022230 Medicago truncatula HOM05D001361 ORTHO05D005105 1.3e-11 74.7 252 27.4
PSO478G4435 Papaver somniferum HOM05D001361 ORTHO05D005105 3.8e-11 73.2 81 50.6
Zm00001eb334060 Zea mays HOM05D001361 ORTHO05D005105 6.6e-11 72.4 339 26.0
FAN07G0196 Fragaria x ananassa HOM05D001361 ORTHO05D005105 1.5e-10 71.2 268 31.0
FAN17G0717 Fragaria x ananassa HOM05D001361 ORTHO05D005105 1.9e-10 70.9 288 27.1
BcaB03g12069 Brassica carinata HOM05D001361 ORTHO05D005105 2.5e-10 70.5 277 30.0
SalBow1G0997 Salvia bowleyana HOM05D001361 ORTHO05D005105 9.5e-10 68.6 64 51.6
Zm00001eb356190 Zea mays HOM05D001361 ORTHO05D005105 2.1e-09 67.4 279 26.2
COL.COLO4_20443 Corchorus olitorius HOM05D001361 ORTHO05D005105 2.8e-09 67.0 131 38.2
CDE06G0592 Ceratophyllum demersum HOM05D001361 ORTHO05D005105 6.1e-09 65.9 62 53.2
BcaC05g26734 Brassica carinata HOM05D001361 ORTHO05D005105 1.8e-08 64.3 258 29.5
MBI11_g05341_MAGBIO Magnolia biondii HOM05D001361 ORTHO05D005105 3.4e-07 60.1 288 29.2
Os01g0100800 Oryza sativa ssp. japonica HOM05D001361 ORTHO05D005105 3.7e-06 56.6 344 24.7
Os05g0103700 Oryza sativa ssp. japonica HOM05D001361 ORTHO05D005105 4.9e-06 56.2 316 25.3


User provided reference genes

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