Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62028840 Chenopodium quinoa HOM05D005950 ORTHO05D008673 2.1e-109 399.1 207 100.0
AUR62005715 Chenopodium quinoa HOM05D005950 ORTHO05D008673 6.5e-90 334.3 207 87.0
Ah.03g135560 Amaranthus hybridus HOM05D005950 ORTHO05D008673 1.8e-79 299.7 206 76.2
EL10Ac6g13611 Beta vulgaris HOM05D005950 ORTHO05D008673 3.0e-79 298.9 206 77.2
QL03p049137 Quercus lobata HOM05D005950 ORTHO05D008673 2.6e-78 295.8 206 72.8
Haze_12503 Corylus avellana HOM05D005950 ORTHO05D008673 2.8e-77 292.4 206 71.8
CSS0009236 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 5.9e-75 284.6 206 69.4
CSS0041196 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 1.7e-74 283.1 206 68.9
Manes.08G101200 Manihot esculenta HOM05D005950 ORTHO05D008673 1.7e-74 283.1 206 69.9
Duzib248G1270 Durio zibethinus HOM05D005950 ORTHO05D008673 1.4e-73 280.0 206 69.4
Hund27394 Selenicereus undatus HOM05D005950 ORTHO05D008673 1.4e-73 280.0 206 69.9
Dinv03756 Davidia involucrata HOM05D005950 ORTHO05D008673 1.9e-73 279.6 204 69.6
COL.COLO4_36001 Corchorus olitorius HOM05D005950 ORTHO05D008673 7.2e-73 277.7 206 68.4
CiPaw.05G101200 Carya illinoinensis HOM05D005950 ORTHO05D008673 1.6e-72 276.6 206 69.9
Thecc.02G192100 Theobroma cacao HOM05D005950 ORTHO05D008673 1.6e-72 276.6 204 70.1
GSVIVG01001090001 Vitis vinifera HOM05D005950 ORTHO05D008673 1.6e-72 276.6 206 68.9
Potri.001G100300 Populus trichocarpa HOM05D005950 ORTHO05D008673 2.1e-72 276.2 206 68.9
RhsimUnG0153300 Rhododendron simsii HOM05D005950 ORTHO05D008673 2.1e-72 276.2 206 69.4
Rhsim12G0072500 Rhododendron simsii HOM05D005950 ORTHO05D008673 2.7e-72 275.8 206 69.4
MELO3C022359.2 Cucumis melo HOM05D005950 ORTHO05D008673 3.6e-72 275.4 205 70.2
CAN.G624.24 Capsicum annuum HOM05D005950 ORTHO05D008673 1.4e-71 273.5 206 67.5
Eucgr.B03560 Eucalyptus grandis HOM05D005950 ORTHO05D008673 2.3e-71 272.7 204 69.1
Peaxi162Scf00023g00931 Petunia axillaris HOM05D005950 ORTHO05D008673 2.3e-71 272.7 206 68.0
Sabra01G0075200 Salix brachista HOM05D005950 ORTHO05D008673 3.0e-71 272.3 206 68.4
PGSC0003DMG400028387 Solanum tuberosum HOM05D005950 ORTHO05D008673 3.0e-71 272.3 206 67.5
CsaV3_6G007730 Cucumis sativus L. HOM05D005950 ORTHO05D008673 5.2e-71 271.6 206 68.0
Gorai.002G021400 Gossypium raimondii HOM05D005950 ORTHO05D008673 5.2e-71 271.6 206 66.5
MBI10_g32324_MAGBIO Magnolia biondii HOM05D005950 ORTHO05D008673 6.7e-71 271.2 206 68.0
Solyc05g012700.3 Solanum lycopersicum HOM05D005950 ORTHO05D008673 6.7e-71 271.2 206 67.0
Cpa.g.sc182.2 Carica papaya HOM05D005950 ORTHO05D008673 8.8e-71 270.8 206 67.5
vmacro16072 Vaccinium macrocarpon HOM05D005950 ORTHO05D008673 8.8e-71 270.8 206 68.4
CANSAT01G2759 Cannabis sativa HOM05D005950 ORTHO05D008673 1.1e-70 270.4 206 66.0
CDE02G3863 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 1.1e-70 270.4 203 69.0
Hma1.2p1_0660F.1_g197630 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 1.1e-70 270.4 204 68.1
Sopen05g007530 Solanum pennellii HOM05D005950 ORTHO05D008673 1.5e-70 270.0 206 66.5
C05p26890 Brassica napus HOM05D005950 ORTHO05D008673 2.0e-70 269.6 206 68.4
Ciclev10005525m.g Citrus clementina HOM05D005950 ORTHO05D008673 2.0e-70 269.6 206 67.0
MD13G1130900 Malus domestica HOM05D005950 ORTHO05D008673 2.0e-70 269.6 206 66.5
Nitab4.5_0006153g0020 Nicotiana tabacum HOM05D005950 ORTHO05D008673 2.6e-70 269.2 206 67.0
PGR102G2360 Punica granatum HOM05D005950 ORTHO05D008673 3.3e-70 268.9 206 68.0
FvH4_4g22640 Fragaria vesca HOM05D005950 ORTHO05D008673 4.4e-70 268.5 206 66.5
FAN12G2095 Fragaria x ananassa HOM05D005950 ORTHO05D008673 4.4e-70 268.5 206 66.5
Lj3A1077T57 Lonicera japonica HOM05D005950 ORTHO05D008673 4.4e-70 268.5 205 68.8
RcHm_v2.0_Chr4g0428871 Rosa chinensis HOM05D005950 ORTHO05D008673 4.4e-70 268.5 206 67.0
TAR371G0811 Trochodendron aralioides HOM05D005950 ORTHO05D008673 4.4e-70 268.5 206 68.0
Atru.chr12.1419 Acer truncatum HOM05D005950 ORTHO05D008673 5.7e-70 268.1 206 66.5
Sed0005763 Sechium edule HOM05D005950 ORTHO05D008673 5.7e-70 268.1 206 67.5
BolC5t31407H Brassica oleracea HOM05D005950 ORTHO05D008673 7.4e-70 267.7 206 68.4
Lsat_1_v5_gn_3_32320 Lactuca sativa HOM05D005950 ORTHO05D008673 7.4e-70 267.7 206 66.5
TAR629G3081 Trochodendron aralioides HOM05D005950 ORTHO05D008673 7.4e-70 267.7 207 67.6
A09p37910 Brassica napus HOM05D005950 ORTHO05D008673 9.7e-70 267.3 206 68.4
FAN17G1731 Fragaria x ananassa HOM05D005950 ORTHO05D008673 9.7e-70 267.3 206 66.5
Prupe.1G214800 Prunus persica HOM05D005950 ORTHO05D008673 1.3e-69 266.9 206 66.0
BcaB07g32425 Brassica carinata HOM05D005950 ORTHO05D008673 2.2e-69 266.2 206 68.0
Cc11_g15000 Coffea canephora HOM05D005950 ORTHO05D008673 2.2e-69 266.2 206 66.0
Lalb_Chr06g0164721 Lupinus albus HOM05D005950 ORTHO05D008673 2.2e-69 266.2 206 66.0
BraA09t39303Z Brassica rapa HOM05D005950 ORTHO05D008673 2.8e-69 265.8 206 68.0
Sc19g0003090 Simmondsia chinensis HOM05D005950 ORTHO05D008673 2.8e-69 265.8 206 66.0
THA.LOC104820536 Tarenaya hassleriana HOM05D005950 ORTHO05D008673 2.8e-69 265.8 206 67.5
TWI36G0089 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 3.7e-69 265.4 206 65.5
Carub.0001s2657 Capsella rubella HOM05D005950 ORTHO05D008673 4.8e-69 265.0 206 67.5
BcaC05g26819 Brassica carinata HOM05D005950 ORTHO05D008673 6.3e-69 264.6 206 68.0
DCAR_024633 Daucus carota HOM05D000512 ORTHO05D008673 8.2e-69 264.2 206 64.6
Nitab4.5_0000208g0380 Nicotiana tabacum HOM05D005950 ORTHO05D008673 8.2e-69 264.2 206 66.5
Gohir.A01G020600 Gossypium hirsutum HOM05D005950 ORTHO05D008673 1.1e-68 263.8 206 64.1
FAN07G2488 Fragaria x ananassa HOM05D005950 ORTHO05D008673 1.4e-68 263.5 206 65.5
Actinidia33998 Actinidia chinensis HOM05D005950 ORTHO05D008673 2.4e-68 262.7 204 66.7
Aqoxy5G03108 Aquilegia oxysepala HOM05D005950 ORTHO05D008673 2.4e-68 262.7 204 67.2
SalBow2G0445 Salvia bowleyana HOM05D005950 ORTHO05D008673 3.1e-68 262.3 207 66.7
Migut.K01055 Erythranthe guttata HOM05D005950 ORTHO05D008673 4.1e-68 261.9 207 66.7
Phvul.007G000300 Phaseolus vulgaris HOM05D005950 ORTHO05D008673 4.1e-68 261.9 207 65.2
MSTRG.8054 Avicennia marina HOM05D005950 ORTHO05D008673 7.0e-68 261.2 205 67.3
Medtr1g099520 Medicago truncatula HOM05D005950 ORTHO05D008673 7.0e-68 261.2 206 64.6
Oeu027106.1 Olea europaea HOM05D005950 ORTHO05D008673 9.1e-68 260.8 206 66.0
TPR.G7754 Trifolium pratense HOM05D005950 ORTHO05D008673 9.1e-68 260.8 206 65.0
AT1G28140 Arabidopsis thaliana HOM05D005950 ORTHO05D008673 3.5e-67 258.8 206 66.0
PSO017G6070 Papaver somniferum HOM05D005950 ORTHO05D008673 5.9e-67 258.1 206 64.6
Aa31sc45G70 Aethionema arabicum HOM05D005950 ORTHO05D008673 7.7e-67 257.7 206 66.0
AL1G41670 Arabidopsis lyrata HOM05D005950 ORTHO05D008673 1.0e-66 257.3 206 66.0
PSO478G4484 Papaver somniferum HOM05D005950 ORTHO05D008673 2.9e-66 255.8 206 64.6
Sp1g24330 Schrenkiella parvula HOM05D005950 ORTHO05D008673 6.5e-66 254.6 206 65.0
Thhalv10008446m.g Eutrema salsugineum HOM05D005950 ORTHO05D008673 8.5e-66 254.2 206 65.0
LjContig00470g0001843 Lotus japonicus HOM05D005950 ORTHO05D008673 8.5e-66 254.2 206 63.6
arahy.Tifrunner.gnm1.ann1.MTDN4F Arachis hypogaea HOM05D005950 ORTHO05D008673 1.1e-65 253.8 206 62.6
VMungo0720G2460 Vigna mungo HOM05D005950 ORTHO05D008673 1.5e-65 253.4 206 63.6
CARHR027610 Cardamine hirsuta HOM05D005950 ORTHO05D008673 3.2e-65 252.3 206 64.1
Duzib052G0358 Durio zibethinus HOM05D005950 ORTHO05D008673 3.2e-65 252.3 207 65.7
SEGI_01129 Sequoiadendron giganteum HOM05D005950 ORTHO05D008673 1.2e-64 250.4 202 64.4
SGA_v2.0_scaffold157G37356 Striga asiatica HOM05D005950 ORTHO05D008673 1.2e-62 243.8 205 63.9
HanXRQChr06g0175111 Helianthus annuus HOM05D005950 ORTHO05D008673 2.0e-62 243.0 206 62.6
ATR0582G132 Amborella trichopoda HOM05D005950 ORTHO05D008673 3.3e-62 242.3 206 59.2
HPP92_007045 Vanilla planifolia HOM05D005950 ORTHO05D008673 5.7e-62 241.5 206 60.7
Os03g0850600 Oryza sativa ssp. japonica HOM05D005950 ORTHO05D008673 2.2e-58 229.6 204 59.3
unitig_747.g21110 Utricularia gibba HOM05D005950 ORTHO05D008673 2.2e-58 229.6 207 59.9
ClCG06G001700 Citrullus lanatus HOM05D005950 ORTHO05D008673 3.8e-58 228.8 206 62.1
Ca_10708_v3 Cicer arietinum L. HOM05D005950 ORTHO05D008673 1.5e-57 226.9 178 66.3
Pp3c8_12800 Physcomitrium patens HOM05D005950 ORTHO05D008673 1.5e-57 226.9 206 56.3
Zm00001eb064540 Zea mays HOM05D005950 ORTHO05D008673 2.7e-56 222.6 206 56.8
Mapoly0027s0093 Marchantia polymorpha HOM05D005950 ORTHO05D008673 8.8e-55 217.6 205 55.1
Psat6g195320 Pisum sativum HOM05D005950 ORTHO05D008673 1.5e-54 216.9 178 63.5
SMO367G1143 Selaginella moellendorffii HOM05D005950 ORTHO05D008673 2.8e-53 212.6 201 52.7
Glyma.20G249800 Glycine max HOM05D005950 ORTHO05D008673 4.8e-53 211.8 178 62.9
AagrBONN_evm.TU.Sc2ySwM_344.2741 Anthoceros agrestis HOM05D005950 ORTHO05D008673 4.1e-52 208.8 204 54.4
CBR_g3659 Chara braunii HOM05D005950 ORTHO05D008673 1.6e-51 206.8 206 53.9
arahy.Tifrunner.gnm1.ann1.PXY63F Arachis hypogaea HOM05D005950 ORTHO05D008673 1.8e-47 193.4 206 53.4
Nn3g16271 Nelumbo nucifera HOM05D005950 ORTHO05D008673 4.0e-47 192.2 151 62.9
CDE06G2125 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 2.0e-46 189.9 142 66.9
Hma1.2p1_0660F.1_g197620 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 3.3e-41 172.6 119 73.1
TWI18G1378 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 1.5e-33 147.1 152 51.3
MCO02G210 Micromonas commoda HOM05D005950 ORTHO05D008673 1.2e-32 144.1 197 44.7
Cre04.g228450 Chlamydomonas reinhardtii HOM05D005950 ORTHO05D008673 1.8e-31 140.2 205 42.0
PRCOL_00003015 Prasinoderma coloniale HOM05D005950 ORTHO05D008673 2.1e-24 116.7 172 40.1
Hma1.2p1_0660F.1_g197640 Hydrangea macrophylla HOM05D005950 ORTHO05D020170 1.4e-20 104.0 57 80.7
Peaxi162Scf00040g00101 Petunia axillaris HOM05D005950 ORTHO05D008673 1.6e-19 100.5 142 45.1
TPR.G36353 Trifolium pratense HOM05D005950 ORTHO05D008673 2.7e-19 99.8 72 61.1
Zm00001eb422050 Zea mays HOM05D005950 ORTHO05D008673 2.7e-19 99.8 81 61.7
Gohir.D01G019100 Gossypium hirsutum HOM05D005950 ORTHO05D008673 3.5e-19 99.4 69 72.5
MD16G1141000 Malus domestica HOM05D005950 ORTHO05D020170 6.6e-18 95.1 60 68.3
Zm00001eb141620 Zea mays HOM05D005950 ORTHO05D444810 1.6e-16 90.5 66 63.6
FAN20G0916 Fragaria x ananassa HOM05D005950 ORTHO05D020170 6.2e-16 88.6 54 74.1
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 2.4e-15 86.7 70 58.6
C05p26860 Brassica napus HOM05D005950 ORTHO05D020170 2.6e-14 83.2 52 71.2
AL1G56270 Arabidopsis lyrata HOM05D005950 ORTHO05D000283 2.9e-13 79.7 61 60.7
BolC5t31405H Brassica oleracea HOM05D005950 ORTHO05D020170 6.4e-13 78.6 49 69.4
A09p37930 Brassica napus HOM05D005950 ORTHO05D020170 5.4e-12 75.5 53 64.2
Glyma.10G298600 Glycine max HOM05D005950 ORTHO05D020170 3.5e-11 72.8 45 68.9
Peaxi162Scf00003g00713 Petunia axillaris HOM05D005950 ORTHO05D305722 4.6e-11 72.4 113 41.6
Peaxi162Scf00968g00313 Petunia axillaris HOM05D005950 ORTHO05D305879 9.6e-09 64.7 177 31.1
AL4G33820 Arabidopsis lyrata HOM05D005950 ORTHO05D080589 3.1e-07 59.7 82 42.7


User provided reference genes

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