Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 2.7e-158 562.0 289 100.0
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 1.2e-155 553.1 289 98.3
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 2.4e-135 485.7 289 85.8
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 6.0e-134 481.1 323 77.7
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 5.3e-122 441.4 289 80.3
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 5.4e-119 431.4 289 76.5
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 3.2e-111 405.6 285 71.9
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 5.4e-111 404.8 285 71.6
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 1.3e-109 400.2 289 70.2
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 5.1e-109 398.3 289 69.9
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 7.4e-108 394.4 288 69.4
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 7.4e-108 394.4 286 70.6
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 3.7e-107 392.1 286 70.3
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 4.8e-107 391.7 290 70.3
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 6.2e-107 391.3 275 71.6
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 1.4e-106 390.2 283 70.0
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 1.8e-106 389.8 290 70.3
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 2.4e-106 389.4 290 70.0
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 5.3e-106 388.3 275 72.0
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 9.0e-106 387.5 286 69.2
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 1.5e-105 386.7 286 69.2
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 2.0e-105 386.3 275 72.0
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 2.6e-105 386.0 290 69.3
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 4.5e-105 385.2 275 71.6
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 5.8e-105 384.8 287 68.6
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 9.9e-105 384.0 286 69.6
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 1.3e-104 383.6 289 67.8
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 1.3e-104 383.6 283 69.3
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 2.2e-104 382.9 290 68.6
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 2.9e-104 382.5 274 71.5
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 4.9e-104 381.7 289 67.1
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 8.4e-104 380.9 290 68.3
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 8.4e-104 380.9 286 67.8
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 1.4e-103 380.2 286 67.8
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 1.4e-103 380.2 275 71.3
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 1.4e-103 380.2 282 68.1
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 1.9e-103 379.8 287 67.2
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 3.2e-103 379.0 283 66.8
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 7.1e-103 377.9 290 67.9
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 1.2e-102 377.1 289 66.8
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 1.6e-102 376.7 254 72.4
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 1.6e-102 376.7 289 67.1
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 6.0e-102 374.8 286 67.5
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 1.8e-101 373.2 277 69.0
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 1.8e-101 373.2 275 70.2
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 2.3e-101 372.9 282 69.1
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 3.9e-101 372.1 289 64.0
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 3.9e-101 372.1 285 66.0
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 3.9e-101 372.1 275 69.1
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 1.5e-100 370.2 287 66.6
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 1.9e-100 369.8 300 66.0
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 2.5e-100 369.4 286 66.8
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 4.3e-100 368.6 286 67.8
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 5.6e-100 368.2 271 69.7
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 2.1e-99 366.3 271 69.7
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 2.8e-99 365.9 286 65.7
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 6.2e-99 364.8 291 66.3
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 3.1e-98 362.5 276 65.9
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 2.0e-97 359.8 287 66.6
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 2.0e-97 359.8 287 66.6
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 2.0e-97 359.8 287 66.6
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 2.0e-97 359.8 277 66.1
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.6e-97 359.4 287 66.6
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 3.4e-97 359.0 275 66.9
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 1.0e-96 357.5 287 65.5
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 4.9e-96 355.1 244 73.0
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 8.4e-96 354.4 287 65.9
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 1.4e-95 353.6 276 67.4
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 1.4e-95 353.6 282 64.9
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 1.4e-95 353.6 287 65.2
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 2.5e-95 352.8 287 65.5
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 2.5e-95 352.8 282 66.3
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 2.5e-95 352.8 294 62.6
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 3.2e-95 352.4 287 65.5
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 4.2e-95 352.1 284 63.4
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 5.5e-95 351.7 292 63.7
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 7.1e-95 351.3 287 65.5
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 7.1e-95 351.3 287 65.5
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 7.1e-95 351.3 287 65.5
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 7.1e-95 351.3 287 65.5
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 7.1e-95 351.3 287 64.8
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 9.3e-95 350.9 288 64.6
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 1.2e-94 350.5 282 64.5
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 1.6e-94 350.1 287 63.8
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 1.6e-94 350.1 279 65.6
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 7.9e-94 347.8 229 73.4
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 1.0e-93 347.4 286 64.3
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 1.3e-93 347.1 229 72.9
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 1.8e-93 346.7 287 64.1
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 1.8e-93 346.7 294 62.2
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 5.1e-93 345.1 293 61.8
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 1.9e-92 343.2 281 64.8
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 2.5e-92 342.8 284 62.0
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 3.3e-92 342.4 295 63.1
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 4.3e-92 342.0 283 63.6
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 4.3e-92 342.0 276 65.2
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 4.3e-92 342.0 230 73.9
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 1.6e-91 340.1 229 72.1
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 4.8e-91 338.6 286 63.3
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 2.4e-90 336.3 245 69.4
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 3.1e-90 335.9 217 74.2
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 2.6e-89 332.8 296 61.1
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 2.6e-89 332.8 261 65.5
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 1.0e-88 330.9 295 61.4
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 1.4e-87 327.0 284 61.3
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 5.5e-87 325.1 277 61.0
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 9.4e-87 324.3 253 67.6
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 1.6e-86 323.6 277 61.4
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 9.7e-84 314.3 275 61.8
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 9.7e-84 314.3 287 57.8
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 5.9e-81 305.1 218 70.6
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 7.7e-81 304.7 298 56.0
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 1.0e-80 304.3 229 67.7
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 1.0e-80 304.3 239 63.6
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 7.9e-78 294.7 245 62.9
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 3.3e-76 289.3 229 64.6
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 9.7e-76 287.7 229 64.6
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 2.8e-75 286.2 240 59.6
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 1.6e-70 270.4 289 47.8
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 4.1e-66 255.8 262 51.9
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 9.1e-66 254.6 238 55.5
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 3.8e-64 249.2 290 45.2
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 4.0e-61 239.2 210 61.9
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.5e-55 220.7 156 69.2
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 9.4e-55 218.0 212 58.0
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 9.4e-55 218.0 284 47.5
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 6.1e-54 215.3 197 51.8
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.3e-53 213.4 197 51.8
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 3.0e-53 213.0 139 74.1
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 3.0e-53 213.0 225 54.7
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 6.8e-53 211.8 197 50.8
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.5e-52 210.7 197 50.8
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.0e-48 198.0 140 74.3
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 2.5e-47 193.4 266 47.0
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 3.7e-43 179.5 197 46.2
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.8e-42 177.2 166 57.8
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-35 154.5 183 46.4
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 6.2e-30 135.6 119 60.5
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 6.8e-29 132.1 83 78.3
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 2.0e-28 130.6 77 81.8
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 9.8e-28 128.3 188 37.8
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 3.7e-27 126.3 215 42.8
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.4e-26 124.4 199 35.2
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 4.1e-26 122.9 209 41.1
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 5.4e-26 122.5 190 37.9
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 1.9e-23 114.0 96 63.5
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 1.9e-23 114.0 96 63.5
PRCOL_00006308 Prasinoderma coloniale HOM05D004641 ORTHO05D005871 5.6e-23 112.5 219 34.2
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 4.1e-18 96.3 59 76.3
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 7.8e-17 92.0 91 47.3
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.3e-16 91.3 61 68.9
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 5.1e-16 89.4 57 71.9
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.5e-15 87.8 58 70.7
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.8e-13 80.9 64 64.1
MBI13_g16082_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.6e-12 77.0 46 73.9
A10p02040 Brassica napus HOM05D000207 ORTHO05D013918 1.7e-11 74.3 51 68.6
EL10Ac2g04116 Beta vulgaris HOM05D004641 ORTHO05D005871 1.2e-09 68.2 46 73.9
A09p47150 Brassica napus HOM05D004641 ORTHO05D022007 1.1e-07 61.6 60 53.3
BraA09t40177Z Brassica rapa HOM05D004641 ORTHO05D022007 1.1e-07 61.6 60 53.3
A09p29530 Brassica napus HOM05D004641 ORTHO05D022007 7.3e-07 58.9 61 49.2
BolC6t36313H Brassica oleracea HOM05D004641 ORTHO05D022007 3.6e-06 56.6 44 61.4
A02p16560 Brassica napus HOM05D004641 ORTHO05D005871 4.8e-06 56.2 90 38.9
EL10Ac2g03274 Beta vulgaris HOM05D001021 ORTHO05D000894 6.2e-06 55.8 38 65.8


User provided reference genes

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