Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62028764 Chenopodium quinoa HOM05D004430 ORTHO05D005088 0.0e+00 2996.8 1556 100.0
AUR62008183 Chenopodium quinoa HOM05D004430 ORTHO05D005088 0.0e+00 2770.0 1539 94.5
EL10Ac5g10708 Beta vulgaris HOM05D004430 ORTHO05D005088 0.0e+00 1940.2 1558 70.3
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 0.0e+00 1713.4 1562 63.6
Hund02762 Selenicereus undatus HOM05D004430 ORTHO05D005088 0.0e+00 1360.9 1559 55.1
Dinv20629 Davidia involucrata HOM05D004430 ORTHO05D005088 5.4e-282 975.3 1645 43.6
GSVIVG01007703001 Vitis vinifera HOM05D004430 ORTHO05D005088 2.4e-277 959.9 1591 44.0
Sc04g0001690 Simmondsia chinensis HOM05D004430 ORTHO05D005088 3.1e-277 959.5 1574 45.4
Atru.chr9.2519 Acer truncatum HOM05D004430 ORTHO05D005088 1.2e-273 947.6 1676 42.6
Dinv38562 Davidia involucrata HOM05D004430 ORTHO05D005088 4.6e-273 945.7 1693 42.7
Gohir.D02G117900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 3.9e-264 916.0 1633 43.1
Gorai.005G135600 Gossypium raimondii HOM05D004430 ORTHO05D005088 6.7e-264 915.2 1633 43.1
Gohir.A03G089900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 3.4e-260 902.9 1635 43.4
CSS0010843 Camellia sinensis var. sinensis HOM05D004430 ORTHO05D005088 7.4e-255 885.2 1616 41.5
Thecc.03G018800 Theobroma cacao HOM05D004430 ORTHO05D005088 6.3e-254 882.1 1607 42.7
Lj4g0003819 Lotus japonicus HOM05D004430 ORTHO05D005088 3.1e-253 879.8 1642 41.8
Prupe.5G170400 Prunus persica HOM05D004430 ORTHO05D005088 3.2e-250 869.8 1713 40.2
Glyma.17G087600 Glycine max HOM05D004430 ORTHO05D005088 5.7e-247 859.0 1631 40.8
COL.COLO4_30100 Corchorus olitorius HOM05D004430 ORTHO05D005088 1.4e-245 854.4 1634 42.4
RcHm_v2.0_Chr7g0193171 Rosa chinensis HOM05D004430 ORTHO05D005088 1.4e-242 844.3 1633 40.4
TWI39G0976 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 1.5e-239 834.3 1621 40.7
Lalb_Chr12g0201701 Lupinus albus HOM05D004430 ORTHO05D005088 4.8e-238 829.3 1634 40.5
Potri.015G079800 Populus trichocarpa HOM05D004430 ORTHO05D005088 2.4e-237 827.0 1630 40.4
MD06G1170800 Malus domestica HOM05D004430 ORTHO05D005088 3.1e-237 826.6 1652 39.8
FvH4_5g05640 Fragaria vesca HOM05D004430 ORTHO05D005088 2.9e-235 820.1 1632 40.0
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 2.9e-235 820.1 1623 40.8
arahy.Tifrunner.gnm1.ann1.FBBL0Z Arachis hypogaea HOM05D004430 ORTHO05D005088 1.9e-234 817.4 1636 39.6
QL10p008934 Quercus lobata HOM05D004430 ORTHO05D005088 5.2e-232 809.3 1637 40.6
Potri.012G088500 Populus trichocarpa HOM05D004430 ORTHO05D005088 5.7e-231 805.8 1627 39.5
Duzib205G1695 Durio zibethinus HOM05D004430 ORTHO05D005088 8.2e-230 802.0 1621 40.6
FAN13G0016 Fragaria x ananassa HOM05D004430 ORTHO05D005088 5.9e-228 795.8 1629 38.9
MD14G1176500 Malus domestica HOM05D004430 ORTHO05D005088 1.1e-226 791.6 1644 39.0
Duzib084G1065 Durio zibethinus HOM05D004430 ORTHO05D005088 4.2e-226 789.6 1622 40.3
VMungo1215G2998 Vigna mungo HOM05D004430 ORTHO05D005088 1.6e-225 787.7 1672 39.4
Duzib068G0887 Durio zibethinus HOM05D004430 ORTHO05D005088 2.6e-223 780.4 1612 39.3
FAN18G2048 Fragaria x ananassa HOM05D004430 ORTHO05D005088 4.8e-222 776.2 1623 38.9
Lalb_Chr07g0182821 Lupinus albus HOM05D004430 ORTHO05D005088 6.3e-222 775.8 1643 39.8
FAN08G1542 Fragaria x ananassa HOM05D004430 ORTHO05D005088 8.3e-222 775.4 1633 38.3
Manes.06G107200 Manihot esculenta HOM05D004430 ORTHO05D005088 8.3e-222 775.4 1680 37.9
Glyma.05G039400 Glycine max HOM05D004430 ORTHO05D005088 2.4e-221 773.9 1619 38.5
FAN18G1146 Fragaria x ananassa HOM05D004430 ORTHO05D005088 2.7e-220 770.4 1629 38.8
vmacro19413 Vaccinium macrocarpon HOM05D004430 ORTHO05D005088 1.1e-218 765.0 1621 38.5
Manes.06G107300 Manihot esculenta HOM05D004430 ORTHO05D005088 1.2e-217 761.5 1681 37.1
Sabra15G0104100 Salix brachista HOM05D004430 ORTHO05D005088 2.7e-217 760.4 1635 39.3
TWI14G0761 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 8.0e-217 758.8 1619 38.4
FAN04G2171 Fragaria x ananassa HOM05D004430 ORTHO05D005088 4.4e-215 753.1 1628 38.3
Sabra12G0063700 Salix brachista HOM05D004430 ORTHO05D005088 5.7e-215 752.7 1682 37.9
Eucgr.B00248 Eucalyptus grandis HOM05D004430 ORTHO05D005088 6.6e-211 739.2 1621 38.4
TAR374G1038 Trochodendron aralioides HOM05D004430 ORTHO05D005088 1.1e-210 738.4 1673 38.8
Ca_16154_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 8.9e-208 728.8 1631 38.4
TPR.G28716 Trifolium pratense HOM05D004430 ORTHO05D005088 5.9e-204 716.1 1619 38.9
Oeu036008.4 Olea europaea HOM05D004430 ORTHO05D005088 2.3e-203 714.1 1593 38.4
Lalb_Chr13g0297721 Lupinus albus HOM05D004430 ORTHO05D005088 6.6e-203 712.6 1653 38.2
ClCG06G017130 Citrullus lanatus HOM05D004430 ORTHO05D005088 4.7e-201 706.4 1631 37.6
Rhsim08G0174600 Rhododendron simsii HOM05D004430 ORTHO05D005088 4.4e-199 699.9 1622 37.4
CsaV3_1G001360 Cucumis sativus L. HOM05D004430 ORTHO05D005088 1.3e-195 688.3 1626 36.5
Phvul.003G202300 Phaseolus vulgaris HOM05D004430 ORTHO05D005088 6.6e-195 686.0 1673 36.9
MELO3C026283.2 Cucumis melo HOM05D004430 ORTHO05D005088 1.5e-194 684.9 1628 37.2
Nitab4.5_0003229g0080 Nicotiana tabacum HOM05D004430 ORTHO05D005088 2.1e-193 681.0 1626 37.4
Medtr3g077440 Medicago truncatula HOM05D004430 ORTHO05D005088 5.8e-191 672.9 1626 37.5
CANSAT80G0620 Cannabis sativa HOM05D004430 ORTHO05D005088 1.6e-188 664.8 1644 37.8
Solyc03g112660.3 Solanum lycopersicum HOM05D004430 ORTHO05D005088 2.1e-188 664.5 1641 36.4
Nitab4.5_0001207g0060 Nicotiana tabacum HOM05D004430 ORTHO05D005088 4.6e-188 663.3 1663 36.1
THA.LOC104809247 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 6.0e-188 662.9 1597 36.7
Nn3g16781 Nelumbo nucifera HOM05D004430 ORTHO05D005088 1.0e-187 662.1 1680 36.0
Sopen03g031740 Solanum pennellii HOM05D004430 ORTHO05D005088 1.3e-187 661.8 1646 36.2
Ca_16155_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 1.1e-186 658.7 1610 36.9
Oeu024704.1 Olea europaea HOM05D004430 ORTHO05D005088 4.3e-186 656.8 1668 35.7
SalBow6G6763 Salvia bowleyana HOM05D004430 ORTHO05D005088 3.1e-184 650.6 1633 35.6
SalBow6G6905 Salvia bowleyana HOM05D004430 ORTHO05D005088 4.0e-184 650.2 1633 35.5
Migut.D01964 Erythranthe guttata HOM05D004430 ORTHO05D005088 6.8e-184 649.4 1640 36.8
Sed0016557 Sechium edule HOM05D004430 ORTHO05D005088 7.8e-180 636.0 1628 35.4
Sed0007760 Sechium edule HOM05D004430 ORTHO05D005088 4.3e-178 630.2 1608 36.1
Peaxi162Scf00089g00174 Petunia axillaris HOM05D004430 ORTHO05D005088 1.4e-176 625.2 1638 34.9
Ciclev10018497m.g Citrus clementina HOM05D004430 ORTHO05D005088 1.8e-176 624.8 1431 37.7
Cc04_g12380 Coffea canephora HOM05D004430 ORTHO05D005088 3.2e-173 614.0 1296 38.3
PGR083G1025 Punica granatum HOM05D004430 ORTHO05D005088 4.6e-172 610.1 1643 36.3
THA.LOC104809778 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 5.1e-171 606.7 1610 34.9
CiPaw.11G023400 Carya illinoinensis HOM05D004430 ORTHO05D005088 5.8e-167 593.2 1516 35.6
ECA232G4503 Erigeron canadensis HOM05D004430 ORTHO05D005088 5.4e-165 586.6 1618 35.2
MSTRG.4361 Avicennia marina HOM05D004430 ORTHO05D005088 6.7e-163 579.7 1637 34.4
CAN.G1166.22 Capsicum annuum HOM05D004430 ORTHO05D005088 4.8e-161 573.5 1643 34.2
MBI19_g24062_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 4.5e-159 567.0 1764 34.4
Aqoxy3G01105 Aquilegia oxysepala HOM05D004430 ORTHO05D005088 1.9e-154 551.6 1650 34.7
AT4G24680 Arabidopsis thaliana HOM05D004430 ORTHO05D005088 6.2e-153 546.6 1600 34.1
CARHR232060 Cardamine hirsuta HOM05D004430 ORTHO05D005088 2.4e-152 544.7 1602 33.4
Sp7g22670 Schrenkiella parvula HOM05D004430 ORTHO05D005088 6.9e-152 543.1 1610 33.9
PSO017G2086 Papaver somniferum HOM05D004430 ORTHO05D005088 7.1e-149 533.1 1729 33.5
PSO478G3312 Papaver somniferum HOM05D004430 ORTHO05D005088 3.5e-148 530.8 1730 33.3
CiPaw.12G028500 Carya illinoinensis HOM05D004430 ORTHO05D005088 5.1e-147 526.9 1395 35.1
TPR.G28721 Trifolium pratense HOM05D004430 ORTHO05D005088 1.1e-146 525.8 1611 34.3
AL7G28520 Arabidopsis lyrata HOM05D004430 ORTHO05D005088 4.8e-145 520.4 1609 33.5
Aa31LG4G9770 Aethionema arabicum HOM05D004430 ORTHO05D005088 3.1e-144 517.7 1588 33.4
Medtr3g077450 Medicago truncatula HOM05D004430 ORTHO05D005088 7.6e-143 513.1 1605 34.2
Carub.0007s1638 Capsella rubella HOM05D004430 ORTHO05D005088 1.3e-142 512.3 1628 33.4
Psat5g115080 Pisum sativum HOM05D004430 ORTHO05D005088 2.9e-142 511.1 1612 33.4
Thhalv10024213m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 5.0e-142 510.4 1635 33.0
A03p55450 Brassica napus HOM05D004430 ORTHO05D005088 1.3e-139 502.3 1594 32.9
BraA03t14619Z Brassica rapa HOM05D004430 ORTHO05D005088 3.0e-139 501.1 1601 33.4
Psat5g115040 Pisum sativum HOM05D004430 ORTHO05D005088 1.1e-138 499.2 1617 32.5
Thhalv10024214m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 5.7e-138 496.9 1617 32.1
Lsat_1_v5_gn_4_75700 Lactuca sativa HOM05D004430 ORTHO05D005088 5.7e-138 496.9 1604 33.8
BcaC06g32869 Brassica carinata HOM05D004430 ORTHO05D005088 4.1e-136 490.7 1591 32.8
BolC7t45865H Brassica oleracea HOM05D004430 ORTHO05D005088 5.3e-136 490.3 1597 33.4
C07p53740 Brassica napus HOM05D004430 ORTHO05D005088 9.1e-136 489.6 1596 33.4
C01p20010 Brassica napus HOM05D004430 ORTHO05D005088 6.5e-134 483.4 1583 32.6
BolC1t01928H Brassica oleracea HOM05D004430 ORTHO05D005088 6.5e-134 483.4 1599 32.5
BraA01t01536Z Brassica rapa HOM05D004430 ORTHO05D005088 1.1e-133 482.6 1592 32.8
A01p16020 Brassica napus HOM05D004430 ORTHO05D005088 1.5e-130 472.2 1593 32.1
Actinidia19338 Actinidia chinensis HOM05D004430 ORTHO05D005088 2.5e-125 454.9 1211 35.2
SGA_v2.0_scaffold7G04148 Striga asiatica HOM05D004430 ORTHO05D005088 1.0e-123 449.5 1643 32.1
HanXRQChr11g0348291 Helianthus annuus HOM05D004430 ORTHO05D005088 2.4e-120 438.3 603 48.4
unitig_37.g12744 Utricularia gibba HOM05D004430 ORTHO05D005088 2.0e-119 435.3 1630 32.1
ATR0757G157 Amborella trichopoda HOM05D004430 ORTHO05D005088 5.9e-119 433.7 1689 32.1
HanXRQChr17g0548691 Helianthus annuus HOM05D004430 ORTHO05D005088 7.7e-119 433.3 1450 33.3
PGSC0003DMG402018164 Solanum tuberosum HOM05D004430 ORTHO05D005088 1.5e-114 419.1 1377 32.2
BcaC09g50842 Brassica carinata HOM05D004430 ORTHO05D005088 2.0e-114 418.7 1563 31.7
arahy.Tifrunner.gnm1.ann1.I95HTR Arachis hypogaea HOM05D004430 ORTHO05D005088 7.7e-111 406.8 774 38.6
Hma1.2p1_0046F.1_g026730 Hydrangea macrophylla HOM05D004430 ORTHO05D005088 1.4e-107 396.0 1219 34.7
TAR622G0490 Trochodendron aralioides HOM05D004430 ORTHO05D005088 1.7e-102 379.0 984 37.2
BcaB03g12441 Brassica carinata HOM05D004430 ORTHO05D005088 8.6e-102 376.7 1553 29.9
Actinidia19112 Actinidia chinensis HOM05D004430 ORTHO05D005088 3.0e-86 325.1 334 58.1
Haze_07543 Corylus avellana HOM05D004430 ORTHO05D005088 2.9e-81 308.5 1577 27.4
MBI10_g44386_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 1.4e-80 306.2 1527 30.2
Zm00001eb028710 Zea mays HOM05D004430 ORTHO05D005088 2.3e-75 288.9 1488 30.1
Zm00001eb136860 Zea mays HOM05D004430 ORTHO05D005088 2.3e-75 288.9 1654 28.9
CDE06G0437 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 6.4e-73 280.8 1575 28.8
Actinidia33085 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.6e-71 276.2 700 35.6
MBI10_g44384_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 1.1e-64 253.4 202 71.8
Cpa.g.sc153.6 Carica papaya HOM05D004430 ORTHO05D005088 3.6e-60 238.4 192 70.8
SHI17143 Sapria himalayana HOM05D004430 ORTHO05D005088 2.1e-55 222.6 748 33.7
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 3.5e-55 221.9 1567 27.5
CDE02G0036 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 4.3e-53 214.9 219 58.9
HPP92_024337 Vanilla planifolia HOM05D004430 ORTHO05D005088 2.8e-52 212.2 1316 27.6
HPP92_006251 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.9e-48 199.5 1323 27.7
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 3.2e-48 198.7 496 34.1
HPP92_006241 Vanilla planifolia HOM05D004430 ORTHO05D005088 5.4e-48 198.0 207 59.9
Actinidia19111 Actinidia chinensis HOM05D004430 ORTHO05D005088 4.9e-41 174.9 481 34.1
SEGI_40513 Sequoiadendron giganteum HOM05D004430 ORTHO05D005088 2.7e-39 169.1 1819 26.3
TAR622G0342 Trochodendron aralioides HOM05D004430 ORTHO05D005088 3.7e-28 132.1 87 74.7
HPP92_024330 Vanilla planifolia HOM05D004430 ORTHO05D005088 3.7e-28 132.1 1304 25.2
Pp3c4_23740 Physcomitrium patens HOM05D004430 ORTHO05D005088 1.6e-23 116.7 1805 24.8
Actinidia33086 Actinidia chinensis HOM05D004430 ORTHO05D005088 5.7e-21 108.2 362 32.6
Pp3c26_2670 Physcomitrium patens HOM05D004430 ORTHO05D005088 1.3e-20 107.1 237 42.2
Psat2g086200 Pisum sativum HOM05D004430 ORTHO05D005088 1.3e-20 107.1 206 40.8
SMO174G0145 Selaginella moellendorffii HOM05D004430 ORTHO05D005088 3.7e-20 105.5 865 27.2
Psat2g086240 Pisum sativum HOM05D004430 ORTHO05D005088 3.1e-19 102.4 207 40.6
Psat2g098600 Pisum sativum HOM05D003093 ORTHO05D005088 8.5e-17 94.4 191 40.8
CBR_g19277 Chara braunii HOM05D004430 ORTHO05D005088 3.6e-15 89.0 480 31.0
Actinidia19337 Actinidia chinensis HOM05D004430 ORTHO05D005088 3.9e-14 85.5 145 42.8
Mapoly0057s0099 Marchantia polymorpha HOM05D004430 ORTHO05D005088 5.1e-14 85.1 1607 24.0
Pp3c26_2830 Physcomitrium patens HOM05D004430 ORTHO05D005088 5.1e-14 85.1 1797 23.7
THA.LOC104822199 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 1.4e-11 77.0 152 37.5
TAR622G0951 Trochodendron aralioides HOM05D004430 ORTHO05D005088 4.5e-10 72.0 140 41.4
Pp3c4_22960 Physcomitrium patens HOM05D004430 ORTHO05D005088 3.8e-09 68.9 1734 25.4
TAR629G1829 Trochodendron aralioides HOM05D003072 ORTHO05D008464 1.2e-07 63.9 122 45.1
THA.LOC104816711 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 3.6e-07 62.4 226 28.8
SHI23780 Sapria himalayana HOM05D004430 ORTHO05D005088 6.7e-06 58.2 143 45.5


User provided reference genes

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