Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62028720 Chenopodium quinoa HOM05D008378 ORTHO05D010346 3.3e-52 208.4 129 100.0
AUR62008138 Chenopodium quinoa HOM05D008378 ORTHO05D010346 4.1e-50 201.4 117 98.3
EL10Ac5g10649 Beta vulgaris HOM05D008378 ORTHO05D010346 4.8e-35 151.4 112 80.4
Haze_07583 Corylus avellana HOM05D008378 ORTHO05D010346 1.4e-18 96.7 102 55.9
QL10p006910 Quercus lobata HOM05D008378 ORTHO05D010346 3.2e-18 95.5 122 49.2
Cfa019213 Carpinus fangiana HOM05D008378 ORTHO05D010346 2.7e-17 92.4 119 51.3
CiPaw.11G020600 Carya illinoinensis HOM05D008378 ORTHO05D010346 1.0e-16 90.5 115 51.3
Sc10g0010230 Simmondsia chinensis HOM05D008378 ORTHO05D010346 1.5e-15 86.7 84 60.7
Rhsim08G0177400 Rhododendron simsii HOM05D008378 ORTHO05D010346 2.8e-14 82.4 108 51.9
Dinv38528 Davidia involucrata HOM05D008378 ORTHO05D010346 3.6e-14 82.0 103 51.5
CsaV3_1G001040 Cucumis sativus L. HOM05D000048 ORTHO05D010346 6.2e-14 81.3 84 59.5
Migut.D01994 Erythranthe guttata HOM05D008378 ORTHO05D010346 1.4e-13 80.1 74 56.8
Lj5A129G68 Lonicera japonica HOM05D003772 ORTHO05D010346 3.1e-13 79.0 82 56.1
SalBow6G1615 Salvia bowleyana HOM05D008378 ORTHO05D010346 3.1e-13 79.0 110 43.6
vmacro19302 Vaccinium macrocarpon HOM05D008378 ORTHO05D010346 4.0e-13 78.6 109 50.5
Hma1.2p1_0046F.1_g027100 Hydrangea macrophylla HOM05D003772 ORTHO05D010346 5.2e-13 78.2 107 43.9
TWI14G0631 Tripterygium wilfordii HOM05D008378 ORTHO05D010346 5.2e-13 78.2 98 49.0
ECA247G3718 Erigeron canadensis HOM05D000048 ORTHO05D000207 6.8e-13 77.8 90 48.9
HanXRQChr02g0035801 Helianthus annuus HOM05D008378 ORTHO05D010346 6.8e-13 77.8 103 46.6
Prupe.8G004000 Prunus persica HOM05D008378 ORTHO05D010346 6.8e-13 77.8 85 52.9
THA.LOC104809774 Tarenaya hassleriana HOM05D008378 ORTHO05D010346 6.8e-13 77.8 73 57.5
MELO3C029768.2 Cucumis melo HOM05D008378 ORTHO05D010346 8.9e-13 77.4 84 59.5
RcHm_v2.0_Chr6g0249651 Rosa chinensis HOM05D008378 ORTHO05D010346 1.2e-12 77.0 84 53.6
ClCG06G017410 Citrullus lanatus HOM05D008378 ORTHO05D010346 1.5e-12 76.6 84 58.3
Lsat_1_v5_gn_1_27801 Lactuca sativa HOM05D000048 ORTHO05D000207 7.5e-12 74.3 112 43.8
MSTRG.23165 Avicennia marina HOM05D008378 ORTHO05D010346 2.2e-11 72.8 120 43.3
Sed0014985 Sechium edule HOM05D008378 ORTHO05D010346 2.9e-11 72.4 75 58.7
PGR083G1326 Punica granatum HOM05D008378 ORTHO05D010346 3.7e-11 72.0 111 45.0
DCAR_021586 Daucus carota HOM05D003772 ORTHO05D004509 4.9e-11 71.6 81 50.6
HanXRQChr05g0154181 Helianthus annuus HOM05D008378 ORTHO05D010346 8.3e-11 70.9 109 45.9
Lsat_1_v5_gn_5_14380 Lactuca sativa HOM05D003772 ORTHO05D004509 7.0e-10 67.8 111 41.4
SalBow5G0298 Salvia bowleyana HOM05D008378 ORTHO05D010346 9.2e-10 67.4 108 43.5
SalBow5G3471 Salvia bowleyana HOM05D008378 ORTHO05D010346 1.2e-09 67.0 108 42.6
Manes.06G110000 Manihot esculenta HOM05D008378 ORTHO05D010346 2.0e-09 66.2 82 52.4
Peaxi162Scf00089g01325 Petunia axillaris HOM05D008378 ORTHO05D010346 2.0e-09 66.2 69 52.2
Peaxi162Scf00089g01344 Petunia axillaris HOM05D000048 ORTHO05D000207 2.0e-09 66.2 122 40.2
Atru.chr9.2574 Acer truncatum HOM05D003157 ORTHO05D004447 3.5e-09 65.5 48 75.0
Migut.O00155 Erythranthe guttata HOM05D008378 ORTHO05D010346 3.5e-09 65.5 113 40.7
Nitab4.5_0000003g0800 Nicotiana tabacum HOM05D008378 ORTHO05D010346 3.5e-09 65.5 88 43.2
AT5G50175 Arabidopsis thaliana HOM05D008378 ORTHO05D010346 4.6e-09 65.1 93 47.3
Carub.0008s1019 Capsella rubella HOM05D008378 ORTHO05D010346 4.6e-09 65.1 95 48.4
Cc04_g11560 Coffea canephora HOM05D008378 ORTHO05D010346 4.6e-09 65.1 65 58.5
Dinv16953 Davidia involucrata HOM05D008378 ORTHO05D010346 4.6e-09 65.1 86 46.5
CARHR258450 Cardamine hirsuta HOM05D008378 ORTHO05D010346 6.0e-09 64.7 68 57.4
Peaxi162Scf00057g00012 Petunia axillaris HOM05D008378 ORTHO05D010346 6.0e-09 64.7 112 42.9
A03p27680 Brassica napus HOM05D008378 ORTHO05D010346 7.8e-09 64.3 90 44.4
BraA03t11981Z Brassica rapa HOM05D008378 ORTHO05D010346 7.8e-09 64.3 90 44.4
Potri.015G083900 Populus trichocarpa HOM05D008378 ORTHO05D010346 7.8e-09 64.3 92 50.0
C03p33390 Brassica napus HOM05D008378 ORTHO05D010346 1.7e-08 63.2 84 48.8
BolC3t15661H Brassica oleracea HOM05D008378 ORTHO05D010346 1.7e-08 63.2 84 48.8
Thhalv10015058m.g Eutrema salsugineum HOM05D008378 ORTHO05D010346 1.7e-08 63.2 96 45.8
TAR624G0900 Trochodendron aralioides HOM05D003772 ORTHO05D004509 1.7e-08 63.2 105 43.8
Aqoxy1G02411 Aquilegia oxysepala HOM05D003772 ORTHO05D004509 2.3e-08 62.8 92 42.4
BcaB01g02914 Brassica carinata HOM05D008378 ORTHO05D010346 2.3e-08 62.8 88 47.7
CSS0009217 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 2.3e-08 62.8 95 43.2
Hma1.2p1_0002F.1_g001920 Hydrangea macrophylla HOM05D003772 ORTHO05D004509 2.3e-08 62.8 92 43.5
CSS0020254 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 3.0e-08 62.4 105 41.0
CSS0025212 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 3.9e-08 62.0 95 43.2
Nitab4.5_0013669g0010 Nicotiana tabacum HOM05D008378 ORTHO05D010346 3.9e-08 62.0 62 53.2
PGSC0003DMG400018121 Solanum tuberosum HOM05D008378 ORTHO05D010346 3.9e-08 62.0 69 44.9
BcaC01g04828 Brassica carinata HOM05D008378 ORTHO05D010346 5.0e-08 61.6 84 47.6
CAN.G248.1 Capsicum annuum HOM05D003772 ORTHO05D004509 6.6e-08 61.2 98 36.7
Sopen06g028050 Solanum pennellii HOM05D008378 ORTHO05D010346 6.6e-08 61.2 66 47.0
TAR629G1107 Trochodendron aralioides HOM05D003772 ORTHO05D004509 6.6e-08 61.2 113 43.4
Sabra15G0107100 Salix brachista HOM05D002488 ORTHO05D002613 1.1e-07 60.5 89 43.8
Aqoxy5G03757 Aquilegia oxysepala HOM05D008378 ORTHO05D010346 1.5e-07 60.1 92 43.5
Duzib132G0444 Durio zibethinus HOM05D003772 ORTHO05D004509 1.5e-07 60.1 91 41.8
Medtr4g078240 Medicago truncatula HOM05D003772 ORTHO05D004509 1.5e-07 60.1 95 38.9
Nitab4.5_0014741g0030 Nicotiana tabacum HOM05D003772 ORTHO05D004509 1.5e-07 60.1 92 40.2
Peaxi162Scf00132g00006 Petunia axillaris HOM05D003772 ORTHO05D004509 1.5e-07 60.1 96 38.5
CSS0031333 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 1.9e-07 59.7 73 45.2
Cc05_g07210 Coffea canephora HOM05D003772 ORTHO05D004509 1.9e-07 59.7 92 39.1
Lj3g0023444 Lotus japonicus HOM05D003772 ORTHO05D004509 1.9e-07 59.7 92 40.2
HPP92_020246 Vanilla planifolia HOM05D003772 ORTHO05D004509 1.9e-07 59.7 76 48.7
Cfa014621 Carpinus fangiana HOM05D003772 ORTHO05D004509 2.5e-07 59.3 89 41.6
Lalb_Chr03g0029491 Lupinus albus HOM05D003772 ORTHO05D004509 2.5e-07 59.3 87 40.2
Nitab4.5_0000638g0260 Nicotiana tabacum HOM05D003772 ORTHO05D004509 3.3e-07 58.9 92 40.2
Peaxi162Scf00059g00193 Petunia axillaris HOM05D003772 ORTHO05D004509 3.3e-07 58.9 102 35.3
PGSC0003DMG400027074 Solanum tuberosum HOM05D008378 ORTHO05D010346 3.3e-07 58.9 80 45.0
TWI59G0493 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 3.3e-07 58.9 87 42.5
Dinv26410 Davidia involucrata HOM05D000001 ORTHO05D004509 5.6e-07 58.2 92 38.0
Manes.12G089142 Manihot esculenta HOM05D003772 ORTHO05D004509 5.6e-07 58.2 89 40.4
Thecc.02G180700 Theobroma cacao HOM05D003772 ORTHO05D004509 5.6e-07 58.2 102 39.2
AL8G24190 Arabidopsis lyrata HOM05D008378 ORTHO05D010346 7.3e-07 57.8 92 45.7
Haze_13171 Corylus avellana HOM05D003772 ORTHO05D004509 7.3e-07 57.8 89 40.4
HPP92_021377 Vanilla planifolia HOM05D003772 ORTHO05D004509 7.3e-07 57.8 95 41.1
Actinidia11078 Actinidia chinensis HOM05D003772 ORTHO05D004509 9.5e-07 57.4 89 40.4
MSTRG.14329 Avicennia marina HOM05D003772 ORTHO05D004509 9.5e-07 57.4 92 40.2
MSTRG.14330 Avicennia marina HOM05D003772 ORTHO05D004509 9.5e-07 57.4 92 40.2
Nn1g04097 Nelumbo nucifera HOM05D003772 ORTHO05D004509 9.5e-07 57.4 84 46.4
Gohir.D02G179200 Gossypium hirsutum HOM05D003772 ORTHO05D004509 1.2e-06 57.0 88 40.9
Lj4g0016291 Lotus japonicus HOM05D020160 ORTHO05D010346 1.2e-06 57.0 68 52.9
Solyc06g071760.1 Solanum lycopersicum HOM05D008378 ORTHO05D010346 1.2e-06 57.0 80 42.5
Solyc10g008310.1 Solanum lycopersicum HOM05D003772 ORTHO05D004509 1.2e-06 57.0 74 45.9
PGSC0003DMG400013145 Solanum tuberosum HOM05D003772 ORTHO05D004509 1.2e-06 57.0 74 45.9
Duzib248G0440 Durio zibethinus HOM05D003772 ORTHO05D004509 1.6e-06 56.6 89 39.3
FvH4_6g26280 Fragaria vesca HOM05D003772 ORTHO05D004509 1.6e-06 56.6 88 38.6
FAN02G3561 Fragaria x ananassa HOM05D003772 ORTHO05D004509 1.6e-06 56.6 88 38.6
FAN05G4300 Fragaria x ananassa HOM05D003772 ORTHO05D004509 1.6e-06 56.6 88 38.6
FAN09G0390 Fragaria x ananassa HOM05D003772 ORTHO05D004509 1.6e-06 56.6 88 38.6
Ca_14276_v3 Cicer arietinum L. HOM05D020160 ORTHO05D010346 2.1e-06 56.2 69 46.4
Aa31sc170G40 Aethionema arabicum HOM05D008378 ORTHO05D010346 2.8e-06 55.8 82 46.3
CARHR236040 Cardamine hirsuta HOM05D003772 ORTHO05D004509 2.8e-06 55.8 96 32.3
Gohir.A03G156100 Gossypium hirsutum HOM05D003772 ORTHO05D004509 2.8e-06 55.8 88 39.8
Gorai.005G201000 Gossypium raimondii HOM05D003772 ORTHO05D004509 2.8e-06 55.8 88 39.8
Sp7g26290 Schrenkiella parvula HOM05D003772 ORTHO05D004509 2.8e-06 55.8 96 33.3
VMungo1127G0003 Vigna mungo HOM05D003772 ORTHO05D004509 2.8e-06 55.8 95 37.9
COL.COLO4_30203 Corchorus olitorius HOM05D003772 ORTHO05D004509 3.6e-06 55.5 95 36.8
Thhalv10026455m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 3.6e-06 55.5 96 33.3
Gohir.D01G016600 Gossypium hirsutum HOM05D003772 ORTHO05D004509 3.6e-06 55.5 85 40.0
Nitab4.5_0001683g0020 Nicotiana tabacum HOM05D008378 ORTHO05D010346 3.6e-06 55.5 103 36.9
PSO675G9105 Papaver somniferum HOM05D003772 ORTHO05D004509 3.6e-06 55.5 92 39.1
Psat0s2365g0040 Pisum sativum HOM05D003772 ORTHO05D004509 3.6e-06 55.5 95 36.8
PGSC0003DMG400018339 Solanum tuberosum HOM05D003772 ORTHO05D004509 3.6e-06 55.5 88 38.6
AL7G24270 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 4.7e-06 55.1 96 32.3
AT4G28330 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 4.7e-06 55.1 96 32.3
DCAR_013015 Daucus carota HOM05D003772 ORTHO05D004509 4.7e-06 55.1 85 37.6
Phvul.011G119000 Phaseolus vulgaris HOM05D003772 ORTHO05D004509 4.7e-06 55.1 95 37.9
PGR042G2646 Punica granatum HOM05D003772 ORTHO05D004509 4.7e-06 55.1 89 41.6
TPR.G28019 Trifolium pratense HOM05D003772 ORTHO05D004509 4.7e-06 55.1 95 35.8
TAR626G1598 Trochodendron aralioides HOM05D003772 ORTHO05D004509 4.7e-06 55.1 107 38.3
Carub.0007s1242 Capsella rubella HOM05D003772 ORTHO05D004509 6.2e-06 54.7 96 32.3
Gohir.A01G016500 Gossypium hirsutum HOM05D003772 ORTHO05D004509 6.2e-06 54.7 85 40.0
Lalb_Chr19g0135261 Lupinus albus HOM05D003772 ORTHO05D004509 6.2e-06 54.7 99 39.4
Manes.13G145756 Manihot esculenta HOM05D003772 ORTHO05D004509 6.2e-06 54.7 89 39.3
Manes.13G145890 Manihot esculenta HOM05D003772 ORTHO05D004509 6.2e-06 54.7 89 39.3
Os12g0295600 Oryza sativa ssp. japonica HOM05D003772 ORTHO05D004509 6.2e-06 54.7 86 40.7
Potri.013G130300 Populus trichocarpa HOM05D003772 ORTHO05D004509 6.2e-06 54.7 91 39.6
Sp6g03590 Schrenkiella parvula HOM05D003772 ORTHO05D004509 6.2e-06 54.7 95 42.1
CSS0030564 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 8.1e-06 54.3 92 38.0
Duzib052G1162 Durio zibethinus HOM05D003772 ORTHO05D004509 8.1e-06 54.3 89 38.2
Gorai.002G018300 Gossypium raimondii HOM05D003772 ORTHO05D004509 8.1e-06 54.3 85 38.8
Manes.13G145808 Manihot esculenta HOM05D003772 ORTHO05D004509 8.1e-06 54.3 85 41.2


User provided reference genes

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