Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62028484 Chenopodium quinoa HOM05D003709 ORTHO05D138253 0.0e+00 1155.6 592 100.0
AUR62028486 Chenopodium quinoa HOM05D003709 ORTHO05D004364 0.0e+00 1111.7 572 100.0
AUR62028485 Chenopodium quinoa HOM05D003709 ORTHO05D004364 1.3e-146 524.2 266 100.0
AUR62006246 Chenopodium quinoa HOM05D003709 ORTHO05D004364 6.9e-20 103.2 53 96.2
EL10Ac7g16841 Beta vulgaris HOM05D003709 ORTHO05D004364 1.1e-14 85.9 114 49.1
EL10Ac7g16842 Beta vulgaris HOM05D003709 ORTHO05D004364 1.1e-14 85.9 114 49.1
Prupe.8G077900 Prunus persica HOM05D003709 ORTHO05D004364 2.2e-13 81.6 113 47.8
MD10G1058500 Malus domestica HOM05D003709 ORTHO05D004364 8.2e-13 79.7 115 46.1
Oeu007203.1 Olea europaea HOM05D003709 ORTHO05D004364 8.2e-13 79.7 115 45.2
Ah.15g090600 Amaranthus hybridus HOM05D003709 ORTHO05D004364 1.1e-12 79.3 54 75.9
Cpa.g.c29173.2 Carica papaya HOM05D003709 ORTHO05D004364 1.8e-12 78.6 57 70.2
ClCG03G000710 Citrullus lanatus HOM05D003709 ORTHO05D004364 1.8e-12 78.6 113 46.0
Solyc10g083220.3 Solanum lycopersicum HOM05D003709 ORTHO05D004364 1.8e-12 78.6 54 72.2
Nn6g34801 Nelumbo nucifera HOM05D003709 ORTHO05D004364 3.1e-12 77.8 57 68.4
Nitab4.5_0001801g0070 Nicotiana tabacum HOM05D003709 ORTHO05D004364 3.1e-12 77.8 59 71.2
PGR004G2656 Punica granatum HOM05D003709 ORTHO05D004364 3.1e-12 77.8 57 71.9
Sopen10g032700 Solanum pennellii HOM05D003709 ORTHO05D004364 3.1e-12 77.8 57 70.2
RcHm_v2.0_Chr6g0269071 Rosa chinensis HOM05D003709 ORTHO05D004364 4.1e-12 77.4 57 68.4
CiPaw.10G014600 Carya illinoinensis HOM05D003709 ORTHO05D004364 5.3e-12 77.0 57 73.7
FvH4_2g10910 Fragaria vesca HOM05D003709 ORTHO05D004364 5.3e-12 77.0 112 47.3
FAN20G0151 Fragaria x ananassa HOM05D003709 ORTHO05D004364 5.3e-12 77.0 112 47.3
FAN24G0281 Fragaria x ananassa HOM05D003709 ORTHO05D004364 5.3e-12 77.0 112 47.3
Rhsim03G0069600 Rhododendron simsii HOM05D003709 ORTHO05D004364 5.3e-12 77.0 63 66.7
GSVIVG01033901001 Vitis vinifera HOM05D003709 ORTHO05D004364 5.3e-12 77.0 56 76.8
Eucgr.A02626 Eucalyptus grandis HOM05D003709 ORTHO05D004364 7.0e-12 76.6 57 70.2
BcaB01g05985 Brassica carinata HOM05D003709 ORTHO05D004364 9.1e-12 76.3 52 73.1
CAN.G841.14 Capsicum annuum HOM05D003709 ORTHO05D004364 9.1e-12 76.3 57 70.2
CARHR206940 Cardamine hirsuta HOM05D003709 ORTHO05D004364 9.1e-12 76.3 115 40.9
Cc06_g06250 Coffea canephora HOM05D003709 ORTHO05D004364 9.1e-12 76.3 122 45.9
Dinv31727 Davidia involucrata HOM05D003709 ORTHO05D004364 9.1e-12 76.3 117 45.3
Thhalv10014881m.g Eutrema salsugineum HOM05D003709 ORTHO05D004364 9.1e-12 76.3 54 70.4
PGSC0003DMG400028247 Solanum tuberosum HOM05D003709 ORTHO05D004364 9.1e-12 76.3 121 40.5
MELO3C009499.2 Cucumis melo HOM05D003709 ORTHO05D004364 1.2e-11 75.9 113 45.1
FAN15G3210 Fragaria x ananassa HOM05D003709 ORTHO05D004364 1.2e-11 75.9 112 46.4
FAN27G1255 Fragaria x ananassa HOM05D003709 ORTHO05D004364 1.2e-11 75.9 112 47.3
Hma1.2p1_1724F.1_g299425 Hydrangea macrophylla HOM05D003709 ORTHO05D004364 1.2e-11 75.9 57 70.2
MD05G1051100 Malus domestica HOM05D003709 ORTHO05D004364 1.2e-11 75.9 115 44.3
A10p30240 Brassica napus HOM05D003709 ORTHO05D004364 1.6e-11 75.5 116 43.1
BraA10t45062Z Brassica rapa HOM05D003709 ORTHO05D004364 1.6e-11 75.5 116 43.1
DCAR_020733 Daucus carota HOM05D003709 ORTHO05D004364 1.6e-11 75.5 57 75.4
AL6G16240 Arabidopsis lyrata HOM05D003709 ORTHO05D004364 2.6e-11 74.7 54 68.5
AT5G06240 Arabidopsis thaliana HOM05D003709 ORTHO05D004364 2.6e-11 74.7 54 68.5
BcaC06g32330 Brassica carinata HOM05D003709 ORTHO05D004364 3.5e-11 74.3 116 42.2
BcaC06g32333 Brassica carinata HOM05D003709 ORTHO05D004364 3.5e-11 74.3 116 42.2
C09p70650 Brassica napus HOM05D003709 ORTHO05D004364 3.5e-11 74.3 116 42.2
BolC9t59821H Brassica oleracea HOM05D003709 ORTHO05D004364 3.5e-11 74.3 116 42.2
Carub.0006s0511 Capsella rubella HOM05D003709 ORTHO05D004364 3.5e-11 74.3 54 68.5
Peaxi162Scf00096g00098 Petunia axillaris HOM05D003709 ORTHO05D004364 3.5e-11 74.3 117 42.7
vmacro07432 Vaccinium macrocarpon HOM05D003709 ORTHO05D004364 3.5e-11 74.3 120 43.3
Actinidia12698 Actinidia chinensis HOM05D003709 ORTHO05D004364 4.5e-11 73.9 57 64.9
Actinidia18412 Actinidia chinensis HOM05D003709 ORTHO05D004364 4.5e-11 73.9 57 64.9
Lsat_1_v5_gn_9_14520 Lactuca sativa HOM05D003709 ORTHO05D004364 4.5e-11 73.9 57 68.4
MD13G1200900 Malus domestica HOM05D003709 ORTHO05D004364 4.5e-11 73.9 54 68.5
Thecc.05G096700 Theobroma cacao HOM05D003709 ORTHO05D004364 4.5e-11 73.9 57 66.7
Aqoxy4G02712 Aquilegia oxysepala HOM05D003709 ORTHO05D004364 5.9e-11 73.6 116 42.2
BcaB01g05734 Brassica carinata HOM05D003709 ORTHO05D004364 5.9e-11 73.6 54 68.5
A03p02630 Brassica napus HOM05D003709 ORTHO05D004364 5.9e-11 73.6 54 66.7
BraA03t09624Z Brassica rapa HOM05D003709 ORTHO05D004364 5.9e-11 73.6 54 66.7
CsaV3_3G037560 Cucumis sativus L. HOM05D003709 ORTHO05D004364 5.9e-11 73.6 113 45.1
Duzib093G0911 Durio zibethinus HOM05D003709 ORTHO05D004364 5.9e-11 73.6 122 41.8
SGA_v2.0_scaffold13G06687 Striga asiatica HOM05D003709 ORTHO05D004364 5.9e-11 73.6 117 45.3
Psat3g030960 Pisum sativum HOM05D003709 ORTHO05D004364 7.7e-11 73.2 54 68.5
Hma1.2p1_0245F.1_g101590 Hydrangea macrophylla HOM05D003709 ORTHO05D004364 1.0e-10 72.8 57 71.9
Manes.08G029100 Manihot esculenta HOM05D003709 ORTHO05D004364 1.0e-10 72.8 118 43.2
THA.LOC104803461 Tarenaya hassleriana HOM05D003709 ORTHO05D004364 1.0e-10 72.8 62 64.5
THA.LOC104826817 Tarenaya hassleriana HOM05D003709 ORTHO05D004364 1.0e-10 72.8 62 64.5
CSS0033506 Camellia sinensis var. sinensis HOM05D003709 ORTHO05D004364 1.3e-10 72.4 117 42.7
CSS0048031 Camellia sinensis var. sinensis HOM05D003709 ORTHO05D004364 1.3e-10 72.4 117 42.7
CANSAT64G1889 Cannabis sativa HOM05D003709 ORTHO05D004364 1.3e-10 72.4 116 43.1
Migut.J00663 Erythranthe guttata HOM05D003709 ORTHO05D004364 1.3e-10 72.4 119 40.3
Gorai.002G197000 Gossypium raimondii HOM05D003709 ORTHO05D004364 1.3e-10 72.4 101 45.5
Sc20g0006470 Simmondsia chinensis HOM05D003709 ORTHO05D004364 1.3e-10 72.4 55 70.9
Actinidia27230 Actinidia chinensis HOM05D003709 ORTHO05D004364 1.7e-10 72.0 55 65.5
Actinidia37294 Actinidia chinensis HOM05D003709 ORTHO05D004364 1.7e-10 72.0 55 65.5
CSS0019397 Camellia sinensis var. sinensis HOM05D003709 ORTHO05D004364 1.7e-10 72.0 117 42.7
Sp6g36640 Schrenkiella parvula HOM05D003709 ORTHO05D004364 1.7e-10 72.0 115 40.9
Sed0021250 Sechium edule HOM05D003709 ORTHO05D004364 1.7e-10 72.0 115 43.5
Dinv21156 Davidia involucrata HOM05D003709 ORTHO05D004364 2.2e-10 71.6 65 64.6
Gohir.A04G147400 Gossypium hirsutum HOM05D003709 ORTHO05D004364 2.2e-10 71.6 57 63.2
Gohir.A05G416501 Gossypium hirsutum HOM05D001765 ORTHO05D003527 2.2e-10 71.6 75 57.3
Gohir.A05G416901 Gossypium hirsutum HOM05D001765 ORTHO05D003527 2.2e-10 71.6 75 57.3
HanXRQChr08g0228531 Helianthus annuus HOM05D003709 ORTHO05D004364 2.2e-10 71.6 57 64.9
COL.COLO4_29662 Corchorus olitorius HOM05D003709 ORTHO05D004364 2.9e-10 71.2 55 65.5
MBI17_g01496_MAGBIO Magnolia biondii HOM05D003709 ORTHO05D004364 2.9e-10 71.2 58 65.5
PSO357G0160 Papaver somniferum HOM05D003709 ORTHO05D004364 2.9e-10 71.2 56 67.9
TWI77G0334 Tripterygium wilfordii HOM05D003709 ORTHO05D004364 2.9e-10 71.2 57 59.6
ECA247G0210 Erigeron canadensis HOM05D003709 ORTHO05D004364 3.8e-10 70.9 57 63.2
MD07G1268900 Malus domestica HOM05D003709 ORTHO05D004364 3.8e-10 70.9 54 68.5
QL07p038048 Quercus lobata HOM05D003709 ORTHO05D004364 3.8e-10 70.9 119 41.2
Actinidia05396 Actinidia chinensis HOM05D003709 ORTHO05D004364 5.0e-10 70.5 57 63.2
Actinidia28628 Actinidia chinensis HOM05D003709 ORTHO05D004364 5.0e-10 70.5 55 63.6
MSTRG.5871 Avicennia marina HOM05D003709 ORTHO05D004364 5.0e-10 70.5 116 43.1
Gohir.D09G133000 Gossypium hirsutum HOM05D003709 ORTHO05D004364 5.0e-10 70.5 57 63.2
Gorai.004G000400 Gossypium raimondii HOM05D003709 ORTHO05D004364 5.0e-10 70.5 56 64.3
Gorai.006G152500 Gossypium raimondii HOM05D003709 ORTHO05D004364 5.0e-10 70.5 57 63.2
Lalb_Chr25g0288201 Lupinus albus HOM05D003709 ORTHO05D004364 5.0e-10 70.5 53 66.0
VMungo1383G1751 Vigna mungo HOM05D003709 ORTHO05D004364 6.5e-10 70.1 78 55.1
Ca_09030_v3 Cicer arietinum L. HOM05D003709 ORTHO05D004364 8.5e-10 69.7 55 63.6
Gohir.A09G141700 Gossypium hirsutum HOM05D003709 ORTHO05D004364 8.5e-10 69.7 57 63.2
Lj1C125T5 Lonicera japonica HOM05D003709 ORTHO05D004364 8.5e-10 69.7 124 41.9
Gohir.A12G074200 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.1e-09 69.3 55 65.5
Lj2g0024912 Lotus japonicus HOM05D003709 ORTHO05D004364 1.1e-09 69.3 55 67.3
PSO339G2742 Papaver somniferum HOM05D003709 ORTHO05D004364 1.1e-09 69.3 57 66.7
HPP92_028584 Vanilla planifolia HOM05D003709 ORTHO05D004364 1.5e-09 68.9 57 57.9
Haze_19660 Corylus avellana HOM05D003709 ORTHO05D004364 1.9e-09 68.6 55 65.5
Haze_10129 Corylus avellana HOM05D003709 ORTHO05D004364 2.5e-09 68.2 58 67.2
HanXRQChr04g0114081 Helianthus annuus HOM05D003709 ORTHO05D004364 2.5e-09 68.2 117 40.2
Gohir.A01G177700 Gossypium hirsutum HOM05D003709 ORTHO05D004364 3.2e-09 67.8 58 63.8
Gohir.A10G101550 Gossypium hirsutum HOM05D003709 ORTHO05D004364 3.2e-09 67.8 58 63.8
Lalb_Chr20g0111541 Lupinus albus HOM05D003709 ORTHO05D004364 3.2e-09 67.8 115 40.9
Atru.chr8.1435 Acer truncatum HOM05D003709 ORTHO05D004364 4.2e-09 67.4 105 44.8
Aa31sc52G10 Aethionema arabicum HOM05D003709 ORTHO05D004364 5.5e-09 67.0 54 61.1
Glyma.19G196500 Glycine max HOM05D003709 ORTHO05D004364 5.5e-09 67.0 79 51.9
Ciclev10013818m.g Citrus clementina HOM05D003709 ORTHO05D004364 7.2e-09 66.6 125 38.4
Haze_00443 Corylus avellana HOM05D000273 ORTHO05D000198 7.2e-09 66.6 58 63.8
Aa31LG11G7240 Aethionema arabicum HOM05D003709 ORTHO05D004364 9.4e-09 66.2 53 62.3
Haze_19671 Corylus avellana HOM05D003709 ORTHO05D004364 9.4e-09 66.2 120 40.8
Sabra16G0080200 Salix brachista HOM05D003709 ORTHO05D004364 9.4e-09 66.2 119 37.8
CDE04G0652 Ceratophyllum demersum HOM05D003709 ORTHO05D004364 1.2e-08 65.9 56 60.7
Gohir.D11G326500 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.2e-08 65.9 57 59.6
SGA_v2.0_scaffold123G33400 Striga asiatica HOM05D003709 ORTHO05D004364 1.2e-08 65.9 36 91.7
Gohir.A13G235900 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.6e-08 65.5 57 57.9
Haze_09934 Corylus avellana HOM05D003709 ORTHO05D004364 2.1e-08 65.1 58 58.6
Nitab4.5_0005187g0010 Nicotiana tabacum HOM05D003709 ORTHO05D004364 2.1e-08 65.1 121 39.7
Zm00001eb266720 Zea mays HOM05D003709 ORTHO05D004364 2.7e-08 64.7 65 56.9
arahy.Tifrunner.gnm1.ann1.VRIY4R Arachis hypogaea HOM05D003709 ORTHO05D004364 3.6e-08 64.3 78 50.0
Ciclev10012932m.g Citrus clementina HOM05D003709 ORTHO05D004364 3.6e-08 64.3 125 36.8
Glyma.03G198800 Glycine max HOM05D003709 ORTHO05D004364 3.6e-08 64.3 79 50.6
Gorai.007G357100 Gossypium raimondii HOM05D003709 ORTHO05D004364 3.6e-08 64.3 121 38.0
Os05g0112750 Oryza sativa ssp. japonica HOM05D003709 ORTHO05D004364 3.6e-08 64.3 74 51.4
arahy.Tifrunner.gnm1.ann1.PZI97L Arachis hypogaea HOM05D003709 ORTHO05D004364 4.7e-08 63.9 54 61.1
Potri.016G074700 Populus trichocarpa HOM05D003709 ORTHO05D004364 4.7e-08 63.9 115 37.4
arahy.Tifrunner.gnm1.ann1.K65CIQ Arachis hypogaea HOM05D003709 ORTHO05D004364 8.0e-08 63.2 78 50.0
Medtr7g105350 Medicago truncatula HOM05D003709 ORTHO05D004364 8.0e-08 63.2 55 56.4
Phvul.001G193000 Phaseolus vulgaris HOM05D003709 ORTHO05D004364 1.4e-07 62.4 119 39.5
Sabra06G0074500 Salix brachista HOM05D003709 ORTHO05D004364 1.4e-07 62.4 55 56.4
Sabra16G0077300 Salix brachista HOM05D003709 ORTHO05D004364 1.4e-07 62.4 58 53.4
TPR.G23331 Trifolium pratense HOM05D003709 ORTHO05D004364 1.4e-07 62.4 56 58.9
Gohir.1Z049623 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.8e-07 62.0 36 77.8
Gorai.N017600 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.8e-07 62.0 39 71.8
Gorai.007G188700 Gossypium raimondii HOM05D003709 ORTHO05D004364 2.3e-07 61.6 33 81.8
unitig_744.g24704 Utricularia gibba HOM05D003709 ORTHO05D004364 3.0e-07 61.2 80 41.2
Gohir.1Z049729 Gossypium hirsutum HOM05D003709 ORTHO05D004364 4.0e-07 60.8 34 79.4
Gohir.D04G000040 Gossypium hirsutum HOM05D003709 ORTHO05D004364 4.0e-07 60.8 34 79.4
Gorai.012G000500 Gossypium raimondii HOM05D003709 ORTHO05D004364 4.0e-07 60.8 34 79.4
Hund28303 Selenicereus undatus HOM05D003709 ORTHO05D004364 4.0e-07 60.8 35 82.9
ClCG10G018670 Citrullus lanatus HOM05D003709 ORTHO05D004364 6.7e-07 60.1 30 90.0
Gohir.D04G000065 Gossypium hirsutum HOM05D003709 ORTHO05D004364 6.7e-07 60.1 33 81.8
Hma1.2p1_2017F.1_g311180 Hydrangea macrophylla HOM05D003709 ORTHO05D004364 6.7e-07 60.1 32 84.4
Hund28305 Selenicereus undatus HOM05D003709 ORTHO05D004364 8.8e-07 59.7 30 86.7
Gohir.A12G001133 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.1e-06 59.3 43 67.4
TAR636G0224 Trochodendron aralioides HOM05D003709 ORTHO05D004364 1.1e-06 59.3 49 59.2
Gohir.A13G149700 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.5e-06 58.9 58 56.9
ATR0315G087 Amborella trichopoda HOM05D003709 ORTHO05D004364 7.5e-06 56.6 61 50.8


User provided reference genes

Program Settings