Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62028456 Chenopodium quinoa HOM05D004289 ORTHO05D005141 3.7e-49 198.0 106 100.0
AUR62042238 Chenopodium quinoa HOM05D004289 ORTHO05D005141 4.7e-44 181.0 106 92.5
Ah.02g128340 Amaranthus hybridus HOM05D004289 ORTHO05D005141 6.4e-33 144.1 106 75.5
EL10Ac6g14140 Beta vulgaris HOM05D004289 ORTHO05D005141 2.3e-27 125.6 80 82.5
CSS0038337 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 1.5e-26 122.9 106 65.1
Sc16g0004250 Simmondsia chinensis HOM05D004289 ORTHO05D005141 9.8e-26 120.2 98 71.4
Duzib052G0484 Durio zibethinus HOM05D004289 ORTHO05D005141 8.3e-25 117.1 106 65.1
CSS0038950 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 1.1e-24 116.7 106 62.3
Gohir.A03G215700 Gossypium hirsutum HOM05D004289 ORTHO05D005141 1.4e-24 116.3 106 65.1
TAR628G0462 Trochodendron aralioides HOM05D004289 ORTHO05D005141 4.1e-24 114.8 106 61.3
Thecc.02G016600 Theobroma cacao HOM05D004289 ORTHO05D005141 7.0e-24 114.0 106 65.1
Actinidia38989 Actinidia chinensis HOM05D004289 ORTHO05D005141 1.6e-23 112.8 106 61.3
Nn5g27488 Nelumbo nucifera HOM05D004289 ORTHO05D005141 1.6e-23 112.8 106 61.3
GSVIVG01023230001 Vitis vinifera HOM05D004289 ORTHO05D005141 2.0e-23 112.5 104 64.4
Gohir.D02G237200 Gossypium hirsutum HOM05D004289 ORTHO05D005141 6.0e-23 110.9 106 62.3
Gorai.005G265800 Gossypium raimondii HOM05D004289 ORTHO05D005141 6.0e-23 110.9 106 62.3
COL.COLO4_17708 Corchorus olitorius HOM05D004289 ORTHO05D005141 7.8e-23 110.5 106 61.3
Prupe.1G581300 Prunus persica HOM05D004289 ORTHO05D005141 5.0e-22 107.8 106 61.3
MD08G1244000 Malus domestica HOM05D004289 ORTHO05D005141 1.1e-21 106.7 106 61.3
THA.LOC104823700 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 2.5e-21 105.5 98 64.3
SGA_v2.0_scaffold131G34372 Striga asiatica HOM05D004289 ORTHO05D005141 3.3e-21 105.1 106 53.8
BcaB03g13311 Brassica carinata HOM05D004289 ORTHO05D005141 5.6e-21 104.4 98 60.2
C08p13100 Brassica napus HOM05D004289 ORTHO05D005141 5.6e-21 104.4 105 61.9
Migut.B00750 Erythranthe guttata HOM05D004289 ORTHO05D005141 7.3e-21 104.0 107 57.0
Lsat_1_v5_gn_9_119620 Lactuca sativa HOM05D004289 ORTHO05D005141 7.3e-21 104.0 106 56.6
Sp1g08260 Schrenkiella parvula HOM05D004289 ORTHO05D005141 9.5e-21 103.6 100 63.0
MD15G1438300 Malus domestica HOM05D004289 ORTHO05D005141 2.1e-20 102.4 106 58.5
BcaC07g41867 Brassica carinata HOM05D004289 ORTHO05D005141 2.8e-20 102.1 100 61.0
C08p49340 Brassica napus HOM05D004289 ORTHO05D005141 2.8e-20 102.1 100 61.0
Thhalv10009166m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 2.8e-20 102.1 100 63.0
QL09p003196 Quercus lobata HOM05D004289 ORTHO05D005141 2.8e-20 102.1 105 51.4
QL09p004791 Quercus lobata HOM05D004289 ORTHO05D005141 2.8e-20 102.1 105 51.4
Sabra01G0171700 Salix brachista HOM05D004289 ORTHO05D005141 3.6e-20 101.7 107 57.9
ClCG08G000420 Citrullus lanatus HOM05D004289 ORTHO05D005141 6.2e-20 100.9 102 57.8
TAR381G0514 Trochodendron aralioides HOM05D004289 ORTHO05D005141 6.2e-20 100.9 103 58.3
C05p07700 Brassica napus HOM05D004289 ORTHO05D005141 8.1e-20 100.5 98 62.2
CiPaw.04G012500 Carya illinoinensis HOM05D004289 ORTHO05D005141 8.1e-20 100.5 106 53.8
THA.LOC104816824 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 8.1e-20 100.5 98 62.2
Potri.004G226100 Populus trichocarpa HOM05D004289 ORTHO05D005141 1.1e-19 100.1 107 57.9
TPR.G34161 Trifolium pratense HOM05D004289 ORTHO05D005141 1.1e-19 100.1 106 56.6
Lsat_1_v5_gn_5_104580 Lactuca sativa HOM05D004289 ORTHO05D005141 1.4e-19 99.8 106 55.7
MELO3C022208.2 Cucumis melo HOM05D004289 ORTHO05D005141 1.8e-19 99.4 103 57.3
Carub.0002s0680 Capsella rubella HOM05D004289 ORTHO05D005141 2.3e-19 99.0 98 61.2
CARHR009620 Cardamine hirsuta HOM05D004289 ORTHO05D005141 2.3e-19 99.0 102 57.8
Ciclev10003782m.g Citrus clementina HOM05D004289 ORTHO05D005141 2.3e-19 99.0 80 67.5
Aa31LG1G5340 Aethionema arabicum HOM05D004289 ORTHO05D005141 3.1e-19 98.6 100 58.0
Duzib248G0764 Durio zibethinus HOM05D004289 ORTHO05D005141 3.1e-19 98.6 106 58.5
AL1G20190 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 4.0e-19 98.2 100 61.0
AT1G09645 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 4.0e-19 98.2 100 60.0
CARHR054450 Cardamine hirsuta HOM05D004289 ORTHO05D005141 4.0e-19 98.2 94 62.8
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 4.0e-19 98.2 104 54.8
Nitab4.5_0005169g0070 Nicotiana tabacum HOM05D004289 ORTHO05D005141 4.0e-19 98.2 81 60.5
Carub.0001s0900 Capsella rubella HOM05D004289 ORTHO05D005141 6.8e-19 97.4 98 57.1
MSTRG.20324 Avicennia marina HOM05D004289 ORTHO05D005141 8.9e-19 97.1 109 55.0
Manes.10G116200 Manihot esculenta HOM05D004289 ORTHO05D005141 8.9e-19 97.1 96 61.5
BolC8t48938H Brassica oleracea HOM05D002143 ORTHO05D002260 1.2e-18 96.7 110 56.4
Oeu058640.2 Olea europaea HOM05D004289 ORTHO05D005141 1.2e-18 96.7 83 66.3
Lj3g0023226 Lotus japonicus HOM05D004289 ORTHO05D005141 1.5e-18 96.3 94 55.3
ECA236G0617 Erigeron canadensis HOM05D004289 ORTHO05D005141 2.0e-18 95.9 108 57.4
RcHm_v2.0_Chr7g0220501 Rosa chinensis HOM05D004289 ORTHO05D005141 2.0e-18 95.9 106 56.6
Sp2g05730 Schrenkiella parvula HOM05D004289 ORTHO05D005141 2.0e-18 95.9 97 61.9
CsaV3_5G040360 Cucumis sativus L. HOM05D004289 ORTHO05D005141 2.6e-18 95.5 103 54.4
vmacro19856 Vaccinium macrocarpon HOM05D004289 ORTHO05D005141 3.4e-18 95.1 99 53.5
Glyma.08G237900 Glycine max HOM05D004289 ORTHO05D005141 4.4e-18 94.7 101 55.4
AT1G57765 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 5.8e-18 94.4 94 59.6
A06p06330 Brassica napus HOM05D004289 ORTHO05D005141 5.8e-18 94.4 93 62.4
Manes.07G025900 Manihot esculenta HOM05D004289 ORTHO05D005141 5.8e-18 94.4 109 56.9
BraA06t23844Z Brassica rapa HOM05D004289 ORTHO05D005141 7.5e-18 94.0 104 57.7
MELO3C016488.2 Cucumis melo HOM05D004289 ORTHO05D005141 7.5e-18 94.0 95 63.2
MBI06_g06694_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 7.5e-18 94.0 95 55.8
HanXRQChr06g0182751 Helianthus annuus HOM05D004289 ORTHO05D005141 1.3e-17 93.2 104 53.8
Thhalv10023770m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 1.7e-17 92.8 94 57.4
Prupe.1G549500 Prunus persica HOM05D004289 ORTHO05D005141 1.7e-17 92.8 102 54.9
BolC5t29521H Brassica oleracea HOM05D004289 ORTHO05D005141 2.2e-17 92.4 73 69.9
ATR1136G135 Amborella trichopoda HOM05D004289 ORTHO05D005141 2.9e-17 92.0 83 61.4
BraA08t35355Z Brassica rapa HOM05D002143 ORTHO05D002260 2.9e-17 92.0 105 53.3
Eucgr.I02780 Eucalyptus grandis HOM05D004289 ORTHO05D005141 2.9e-17 92.0 98 57.1
Sed0006384 Sechium edule HOM05D004289 ORTHO05D005141 2.9e-17 92.0 107 52.3
Sabra19G0088300 Salix brachista HOM05D004289 ORTHO05D005141 3.7e-17 91.7 94 51.1
Phvul.011G000300 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 4.9e-17 91.3 101 53.5
Potri.003G005400 Populus trichocarpa HOM05D004289 ORTHO05D005141 6.4e-17 90.9 101 56.4
GSVIVG01025943001 Vitis vinifera HOM05D004289 ORTHO05D005141 6.4e-17 90.9 82 58.5
Aqoxy5G00854 Aquilegia oxysepala HOM05D004289 ORTHO05D005141 8.3e-17 90.5 98 54.1
VMungo0540G0867 Vigna mungo HOM05D004289 ORTHO05D005141 8.3e-17 90.5 102 55.9
AL1G67510 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 1.1e-16 90.1 96 57.3
BolC8t52471H Brassica oleracea HOM05D004289 ORTHO05D005141 1.1e-16 90.1 108 52.8
MBI17_g24966_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 1.1e-16 90.1 94 54.3
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 1.1e-16 90.1 108 54.6
Potri.019G077100 Populus trichocarpa HOM05D004289 ORTHO05D005141 2.4e-16 89.0 94 52.1
Atru.chr6.550 Acer truncatum HOM05D004289 ORTHO05D005141 3.2e-16 88.6 57 84.2
FAN13G3078 Fragaria x ananassa HOM05D004289 ORTHO05D005141 4.1e-16 88.2 100 53.0
VMungo0540G1552 Vigna mungo HOM05D004289 ORTHO05D005141 4.1e-16 88.2 82 56.1
Medtr4g032200 Medicago truncatula HOM05D004289 ORTHO05D005141 5.4e-16 87.8 95 53.7
FvH4_5g32580 Fragaria vesca HOM05D004289 ORTHO05D005141 1.2e-15 86.7 100 52.0
MBI18_g30384_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 1.2e-15 86.7 82 58.5
PGSC0003DMG400025523 Solanum tuberosum HOM05D004289 ORTHO05D005141 1.6e-15 86.3 108 52.8
arahy.Tifrunner.gnm1.ann1.291MDK Arachis hypogaea HOM05D004289 ORTHO05D005141 2.7e-15 85.5 101 52.5
HPP92_002677 Vanilla planifolia HOM05D004289 ORTHO05D005141 2.7e-15 85.5 93 49.5
Migut.C01335 Erythranthe guttata HOM05D004289 ORTHO05D005141 4.6e-15 84.7 108 53.7
SalBow7G0958 Salvia bowleyana HOM05D004289 ORTHO05D005141 4.6e-15 84.7 74 59.5
HPP92_002618 Vanilla planifolia HOM05D004289 ORTHO05D005141 4.6e-15 84.7 93 49.5
FAN10G0807 Fragaria x ananassa HOM05D004289 ORTHO05D005141 6.0e-15 84.3 107 51.4
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 6.0e-15 84.3 99 50.5
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 7.8e-15 84.0 100 49.0
QL02p100957 Quercus lobata HOM05D004289 ORTHO05D005141 1.3e-14 83.2 99 50.5
Cfa008122 Carpinus fangiana HOM05D000042 ORTHO05D000028 1.7e-14 82.8 81 53.1
PSO170G0294 Papaver somniferum HOM05D004289 ORTHO05D005141 1.7e-14 82.8 92 51.1
RcHm_v2.0_Chr7g0229261 Rosa chinensis HOM05D004289 ORTHO05D005141 2.3e-14 82.4 97 52.6
Peaxi162Scf00688g00334 Petunia axillaris HOM05D004289 ORTHO05D005141 3.9e-14 81.6 97 54.6
Phvul.006G220000 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 3.9e-14 81.6 104 51.9
Cc02_g23340 Coffea canephora HOM05D004289 ORTHO05D005141 8.6e-14 80.5 106 49.1
PSO017G2658 Papaver somniferum HOM05D004289 ORTHO05D005141 1.1e-13 80.1 92 50.0
MD08G1216400 Malus domestica HOM05D004289 ORTHO05D005141 1.5e-13 79.7 95 50.5
Nitab4.5_0000016g0420 Nicotiana tabacum HOM05D004289 ORTHO05D005141 1.5e-13 79.7 114 44.7
Nitab4.5_0029023g0010 Nicotiana tabacum HOM05D004289 ORTHO05D005141 1.5e-13 79.7 97 50.5
Oeu048223.2 Olea europaea HOM05D004289 ORTHO05D005141 1.5e-13 79.7 107 45.8
RcHm_v2.0_Chr3g0495521 Rosa chinensis HOM05D004289 ORTHO05D005141 1.5e-13 79.7 67 61.2
FvH4_5g28260 Fragaria vesca HOM05D004289 ORTHO05D005141 1.9e-13 79.3 65 63.1
arahy.Tifrunner.gnm1.ann1.M3EZX1 Arachis hypogaea HOM05D004289 ORTHO05D005141 2.5e-13 79.0 96 52.1
MD15G1403500 Malus domestica HOM05D004289 ORTHO05D005141 2.5e-13 79.0 95 48.4
Haze_10030 Corylus avellana HOM05D004289 ORTHO05D005141 4.3e-13 78.2 72 61.1
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 4.3e-13 78.2 95 48.4
FAN18G0926 Fragaria x ananassa HOM05D004289 ORTHO05D005141 5.6e-13 77.8 102 47.1
Os05g0419600 Oryza sativa ssp. japonica HOM05D004289 ORTHO05D005141 7.3e-13 77.4 83 56.6
HanXRQChr03g0067991 Helianthus annuus HOM05D004289 ORTHO05D005141 9.5e-13 77.0 92 51.1
MD05G1210300 Malus domestica HOM05D004289 ORTHO05D005141 1.6e-12 76.3 95 50.5
Psat7g226600 Pisum sativum HOM05D004289 ORTHO05D005141 2.8e-12 75.5 90 50.0
RcHm_v2.0_Chr5g0063911 Rosa chinensis HOM05D004289 ORTHO05D005141 3.6e-12 75.1 77 55.8
THA.LOC104820335 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 3.6e-12 75.1 96 50.0
Aa31LG2G11220 Aethionema arabicum HOM05D004289 ORTHO05D005141 4.7e-12 74.7 94 52.1
FAN04G1595 Fragaria x ananassa HOM05D004289 ORTHO05D005141 6.2e-12 74.3 93 48.4
FAN18G1872 Fragaria x ananassa HOM05D004289 ORTHO05D005141 8.1e-12 73.9 92 48.9
Gohir.D04G177000 Gossypium hirsutum HOM05D004289 ORTHO05D005141 8.1e-12 73.9 106 46.2
Gorai.012G169900 Gossypium raimondii HOM05D004289 ORTHO05D005141 8.1e-12 73.9 106 46.2
unitig_32.g11200 Utricularia gibba HOM05D004289 ORTHO05D005141 1.1e-11 73.6 82 51.2
Actinidia01613 Actinidia chinensis HOM05D000487 ORTHO05D000405 1.8e-11 72.8 83 50.6
Haze_13910 Corylus avellana HOM05D002143 ORTHO05D002260 1.8e-11 72.8 85 50.6
Gohir.A04G133900 Gossypium hirsutum HOM05D004289 ORTHO05D005141 1.8e-11 72.8 106 46.2
arahy.Tifrunner.gnm1.ann1.2Z03QX Arachis hypogaea HOM05D004289 ORTHO05D005141 3.1e-11 72.0 106 47.2
Sed0020386 Sechium edule HOM05D004289 ORTHO05D005141 4.0e-11 71.6 99 50.5
TPR.G2097 Trifolium pratense HOM05D004289 ORTHO05D005141 4.0e-11 71.6 53 73.6
Zm00001eb349170 Zea mays HOM05D004289 ORTHO05D005141 5.2e-11 71.2 102 45.1
CDE08G0453 Ceratophyllum demersum HOM05D004289 ORTHO05D005141 8.9e-11 70.5 76 47.4
PGR042G0739 Punica granatum HOM05D004289 ORTHO05D005141 1.2e-10 70.1 100 46.0
SalBow7G1625 Salvia bowleyana HOM05D004289 ORTHO05D005141 2.6e-10 68.9 79 53.2
unitig_748.g7732 Utricularia gibba HOM05D004289 ORTHO05D005141 2.6e-10 68.9 106 42.5
Cc10_g09380 Coffea canephora HOM05D004289 ORTHO05D005141 7.6e-10 67.4 90 48.9
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 2.9e-09 65.5 81 45.7
Lalb_Chr15g0090801 Lupinus albus HOM05D004289 ORTHO05D005141 8.4e-09 63.9 99 46.5
Lalb_Chr18g0061091 Lupinus albus HOM05D004289 ORTHO05D005141 8.4e-09 63.9 99 47.5
CiPaw.05G003600 Carya illinoinensis HOM05D004289 ORTHO05D005141 1.4e-08 63.2 72 52.8
Glyma.16G002000 Glycine max HOM05D004289 ORTHO05D005141 3.2e-08 62.0 103 44.7
AUR62041005 Chenopodium quinoa HOM05D004061 ORTHO05D004693 6.0e-07 57.8 61 50.8
Glyma.12G165600 Glycine max HOM05D004289 ORTHO05D005141 6.0e-07 57.8 104 46.2
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 6.0e-07 57.8 67 49.3
Sopen01g045750 Solanum pennellii HOM05D004289 ORTHO05D005141 3.0e-06 55.5 106 38.7
Sabra16G0089600 Salix brachista HOM05D004061 ORTHO05D004693 5.1e-06 54.7 66 47.0
Actinidia05286 Actinidia chinensis HOM05D004061 ORTHO05D004693 6.6e-06 54.3 76 42.1
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 6.6e-06 54.3 70 41.4
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 6.6e-06 54.3 68 45.6
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 8.6e-06 53.9 63 46.0
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 8.6e-06 53.9 92 37.0
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 8.6e-06 53.9 92 37.0


User provided reference genes

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