Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62028295 Chenopodium quinoa HOM05D000434 ORTHO05D005992 1.7e-170 602.4 283 100.0
AUR62001199 Chenopodium quinoa HOM05D000434 ORTHO05D005992 1.1e-153 546.6 317 83.9
AUR62022129 Chenopodium quinoa HOM05D000434 ORTHO05D005992 2.7e-147 525.4 317 80.8
EL10Ac7g17989 Beta vulgaris HOM05D000434 ORTHO05D005992 2.5e-137 492.3 317 73.5
Ah.08g218690 Amaranthus hybridus HOM05D000434 ORTHO05D007220 1.4e-127 459.9 316 69.0
GSVIVG01007623001 Vitis vinifera HOM05D000434 ORTHO05D005992 1.8e-127 459.5 313 67.4
Atru.chr9.2595 Acer truncatum HOM05D000434 ORTHO05D005992 2.0e-126 456.1 280 73.2
CSS0032276 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D005992 3.8e-125 451.8 316 65.8
Lj5P131T21 Lonicera japonica HOM05D000434 ORTHO05D005992 5.5e-124 448.0 314 66.2
Sc04g0001380 Simmondsia chinensis HOM05D000434 ORTHO05D005992 1.4e-122 443.4 315 66.3
TAR622G0355 Trochodendron aralioides HOM05D000434 ORTHO05D005992 2.6e-121 439.1 314 64.6
MD14G1170200 Malus domestica HOM05D000434 ORTHO05D005992 3.3e-121 438.7 313 63.9
Cfa019231 Carpinus fangiana HOM05D000434 ORTHO05D005992 5.7e-121 438.0 313 64.5
Lalb_Chr08g0236831 Lupinus albus HOM05D000434 ORTHO05D005992 7.4e-121 437.6 313 65.2
Haze_07598 Corylus avellana HOM05D000434 ORTHO05D005992 9.7e-121 437.2 313 64.5
PGR083G1106 Punica granatum HOM05D000434 ORTHO05D005992 3.7e-120 435.3 312 63.8
FAN08G0399 Fragaria x ananassa HOM05D000434 ORTHO05D005992 6.3e-120 434.5 313 63.6
FvH4_5g06420 Fragaria vesca HOM05D000434 ORTHO05D005992 8.2e-120 434.1 313 63.6
FAN18G2656 Fragaria x ananassa HOM05D000434 ORTHO05D005992 8.2e-120 434.1 313 63.6
FAN04G1602 Fragaria x ananassa HOM05D000434 ORTHO05D005992 2.4e-119 432.6 313 63.6
QL10p006660 Quercus lobata HOM05D000434 ORTHO05D005992 5.3e-119 431.4 310 64.8
Prupe.5G164400 Prunus persica HOM05D000434 ORTHO05D005992 6.9e-119 431.0 313 62.3
ClCG03G003070 Citrullus lanatus HOM05D000434 ORTHO05D005992 9.1e-119 430.6 311 64.6
Duzib068G0672 Durio zibethinus HOM05D000434 ORTHO05D005992 9.1e-119 430.6 313 63.9
Glyma.05G042300 Glycine max HOM05D000434 ORTHO05D005992 9.1e-119 430.6 312 64.1
Rhsim12G0168500 Rhododendron simsii HOM05D000434 ORTHO05D005992 1.2e-118 430.3 312 64.7
Thecc.03G116300 Theobroma cacao HOM05D000434 ORTHO05D005992 1.2e-118 430.3 314 62.7
CiPaw.12G032200 Carya illinoinensis HOM05D000434 ORTHO05D005992 2.0e-118 429.5 309 63.8
MELO3C002306.2 Cucumis melo HOM05D000434 ORTHO05D005992 2.0e-118 429.5 311 63.3
Aqoxy5G03716 Aquilegia oxysepala HOM05D000434 ORTHO05D005992 3.4e-118 428.7 312 63.8
Glyma.17G125000 Glycine max HOM05D000434 ORTHO05D005992 3.4e-118 428.7 312 63.8
Cpa.g.sc968.1 Carica papaya HOM05D000434 ORTHO05D005992 5.9e-118 427.9 315 63.2
Ciclev10021198m.g Citrus clementina HOM05D000434 ORTHO05D005992 7.7e-118 427.6 312 62.8
RcHm_v2.0_Chr7g0192361 Rosa chinensis HOM05D000434 ORTHO05D005992 1.3e-117 426.8 313 62.9
Sed0014341 Sechium edule HOM05D000434 ORTHO05D005992 1.3e-117 426.8 311 63.0
COL.COLO4_21936 Corchorus olitorius HOM05D000434 ORTHO05D005992 1.7e-117 426.4 310 64.2
CsaV3_1G008920 Cucumis sativus L. HOM05D000434 ORTHO05D005992 2.9e-117 425.6 311 63.0
CANSAT80G1313 Cannabis sativa HOM05D000434 ORTHO05D005992 5.0e-117 424.9 311 60.8
Glyma.06G176400 Glycine max HOM05D000434 ORTHO05D005992 6.5e-117 424.5 305 64.6
Gohir.A12G185500 Gossypium hirsutum HOM05D000434 ORTHO05D005992 6.5e-117 424.5 316 62.7
Nn4g22577 Nelumbo nucifera HOM05D000434 ORTHO05D005992 6.5e-117 424.5 315 63.2
Nitab4.5_0008037g0030 Nicotiana tabacum HOM05D000434 ORTHO05D005992 8.5e-117 424.1 312 62.5
Gorai.008G202000 Gossypium raimondii HOM05D000434 ORTHO05D005992 1.4e-116 423.3 316 62.7
TPR.G37491 Trifolium pratense HOM05D000434 ORTHO05D007220 3.2e-116 422.2 312 61.5
Nitab4.5_0002522g0080 Nicotiana tabacum HOM05D000434 ORTHO05D005992 7.2e-116 421.0 312 62.2
arahy.Tifrunner.gnm1.ann1.D0ANT3 Arachis hypogaea HOM05D000434 ORTHO05D005992 9.4e-116 420.6 313 63.9
Cc04_g11350 Coffea canephora HOM05D000434 ORTHO05D005992 9.4e-116 420.6 312 62.2
arahy.Tifrunner.gnm1.ann1.Z1M7DP Arachis hypogaea HOM05D000434 ORTHO05D005992 1.2e-115 420.2 313 63.6
DCAR_007452 Daucus carota HOM05D000434 ORTHO05D007220 1.2e-115 420.2 304 63.5
CANSAT80G2029 Cannabis sativa HOM05D000434 ORTHO05D005992 1.6e-115 419.9 308 62.3
Glyma.06G176500 Glycine max HOM05D000434 ORTHO05D005992 1.6e-115 419.9 305 63.9
Eucgr.B00212 Eucalyptus grandis HOM05D000434 ORTHO05D005992 3.6e-115 418.7 313 62.6
Peaxi162Scf00089g01220 Petunia axillaris HOM05D000434 ORTHO05D005992 4.7e-115 418.3 314 62.1
TWI39G0022 Tripterygium wilfordii HOM05D000434 ORTHO05D005992 4.7e-115 418.3 307 63.2
MSTRG.4348 Avicennia marina HOM05D000434 ORTHO05D005992 6.1e-115 417.9 312 61.9
Gohir.A03G074900 Gossypium hirsutum HOM05D000434 ORTHO05D005992 6.1e-115 417.9 314 60.8
Oeu036498.1 Olea europaea HOM05D000434 ORTHO05D005992 6.1e-115 417.9 312 62.5
COL.COLO4_20637 Corchorus olitorius HOM05D000434 ORTHO05D005992 8.0e-115 417.5 314 62.1
Lalb_Chr07g0183021 Lupinus albus HOM05D000434 ORTHO05D005992 1.0e-114 417.2 313 62.0
ECA232G2851 Erigeron canadensis HOM05D000434 ORTHO05D005992 1.8e-114 416.4 312 60.3
Ca_19422_v3 Cicer arietinum L. HOM05D000434 ORTHO05D005992 2.3e-114 416.0 314 62.1
Lj4g0020673 Lotus japonicus HOM05D000434 ORTHO05D005992 5.2e-114 414.8 310 63.2
HanXRQChr09g0272611 Helianthus annuus HOM05D000434 ORTHO05D005992 8.8e-114 414.1 313 62.0
CAN.G126.46 Capsicum annuum HOM05D000434 ORTHO05D005992 1.5e-113 413.3 312 61.9
Phvul.009G172700 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 2.0e-113 412.9 305 63.6
Phvul.009G172900 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 4.4e-113 411.8 305 62.6
Sopen03g031180 Solanum pennellii HOM05D000434 ORTHO05D005992 7.4e-113 411.0 312 61.5
MBI06_g22722_MAGBIO Magnolia biondii HOM05D000434 ORTHO05D005992 9.7e-113 410.6 309 61.8
Solyc03g112080.1 Solanum lycopersicum HOM05D000434 ORTHO05D005992 2.2e-112 409.5 312 61.5
Medtr3g076590 Medicago truncatula HOM05D000434 ORTHO05D005992 2.8e-112 409.1 305 63.3
Phvul.003G206000 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 2.8e-112 409.1 305 61.3
Potri.012G089400 Populus trichocarpa HOM05D000434 ORTHO05D005992 2.8e-112 409.1 313 61.7
PGSC0003DMG400018193 Solanum tuberosum HOM05D000434 ORTHO05D005992 2.8e-112 409.1 312 61.2
Manes.06G111500 Manihot esculenta HOM05D000434 ORTHO05D005992 3.7e-112 408.7 312 61.9
VMungo1215G0774 Vigna mungo HOM05D000434 ORTHO05D005992 8.2e-112 407.5 314 60.2
Ca_16123_v3 Cicer arietinum L. HOM05D000434 ORTHO05D005992 1.1e-111 407.1 304 63.8
ATR0122G026 Amborella trichopoda HOM05D000434 ORTHO05D005992 1.8e-111 406.4 315 59.4
SEGI_02641 Sequoiadendron giganteum HOM05D000434 ORTHO05D005992 1.8e-111 406.4 306 60.5
VMungo1309G2813 Vigna mungo HOM05D000434 ORTHO05D005992 4.1e-111 405.2 305 62.3
Gohir.D12G188284 Gossypium hirsutum HOM05D000434 ORTHO05D005992 5.3e-111 404.8 303 62.4
LjContig00127g0004723 Lotus japonicus HOM05D000434 ORTHO05D005992 5.3e-111 404.8 316 60.4
Lalb_Chr13g0297571 Lupinus albus HOM05D000434 ORTHO05D005992 5.3e-111 404.8 308 61.0
SGA_v2.0_scaffold90G27827 Striga asiatica HOM05D000434 ORTHO05D005992 5.3e-111 404.8 310 62.3
Phvul.009G172800 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 7.0e-111 404.4 305 61.6
Sabra12G0064400 Salix brachista HOM05D000434 ORTHO05D005992 1.6e-110 403.3 315 59.4
Psat4g061720 Pisum sativum HOM05D000434 ORTHO05D005992 2.6e-110 402.5 308 59.1
Medtr4g104690 Medicago truncatula HOM05D000434 ORTHO05D005992 4.5e-110 401.7 308 60.7
Peaxi162Scf00801g00033 Petunia axillaris HOM05D000434 ORTHO05D005992 5.9e-110 401.4 312 60.9
Psat5g116720 Pisum sativum HOM05D000434 ORTHO05D005992 5.9e-110 401.4 304 63.2
HPP92_004599 Vanilla planifolia HOM05D000434 ORTHO05D005992 7.7e-110 401.0 307 61.6
TPR.G35602 Trifolium pratense HOM05D000434 ORTHO05D005992 1.0e-109 400.6 305 62.3
VMungo1309G2156 Vigna mungo HOM05D000434 ORTHO05D005992 1.0e-109 400.6 306 61.1
Oeu044591.1 Olea europaea HOM05D000434 ORTHO05D005992 5.0e-109 398.3 315 61.0
THA.LOC104824991 Tarenaya hassleriana HOM05D000434 ORTHO05D005992 3.2e-108 395.6 300 60.7
SGA_v2.0_scaffold114G31805 Striga asiatica HOM05D000434 ORTHO05D005992 5.5e-108 394.8 311 59.8
VMungo1309G2109 Vigna mungo HOM05D000434 ORTHO05D005992 7.2e-108 394.4 305 60.7
Lsat_1_v5_gn_4_79260 Lactuca sativa HOM05D000434 ORTHO05D005992 1.2e-107 393.7 307 58.3
Nitab4.5_0001243g0040 Nicotiana tabacum HOM05D000434 ORTHO05D005992 4.7e-107 391.7 312 58.3
Aa31LG7G11140 Aethionema arabicum HOM05D000434 ORTHO05D005992 1.0e-106 390.6 302 58.6
Migut.O00171 Erythranthe guttata HOM05D000434 ORTHO05D005992 1.0e-106 390.6 312 58.0
Thhalv10025788m.g Eutrema salsugineum HOM05D000434 ORTHO05D005992 1.0e-106 390.6 308 58.1
SalBow5G5274 Salvia bowleyana HOM05D000434 ORTHO05D005992 1.8e-106 389.8 313 58.5
SalBow5G1452 Salvia bowleyana HOM05D000434 ORTHO05D005992 2.3e-106 389.4 313 58.1
Carub.0007s1633 Capsella rubella HOM05D000434 ORTHO05D005992 5.2e-106 388.3 302 58.6
CARHR232100 Cardamine hirsuta HOM05D000434 ORTHO05D005992 1.2e-105 387.1 302 58.3
Sp7g22710 Schrenkiella parvula HOM05D000434 ORTHO05D005992 1.5e-105 386.7 308 57.1
AT4G24730 Arabidopsis thaliana HOM05D000434 ORTHO05D005992 2.6e-105 386.0 302 57.9
CDE09G0062 Ceratophyllum demersum HOM05D000434 ORTHO05D005992 7.5e-105 384.4 307 58.3
Migut.D02023 Erythranthe guttata HOM05D000434 ORTHO05D005992 9.7e-105 384.0 304 59.9
Nitab4.5_0000025g0390 Nicotiana tabacum HOM05D000434 ORTHO05D005992 1.7e-104 383.3 312 57.4
AL7G28460 Arabidopsis lyrata HOM05D000434 ORTHO05D005992 2.2e-104 382.9 302 57.9
SalBow5G0725 Salvia bowleyana HOM05D000434 ORTHO05D005992 4.8e-104 381.7 311 57.6
Os07g0688000 Oryza sativa ssp. japonica HOM05D000434 ORTHO05D005992 8.2e-104 380.9 313 54.0
BraA01t01541Z Brassica rapa HOM05D000434 ORTHO05D001445 7.0e-103 377.9 302 57.6
A01p16060 Brassica napus HOM05D000434 ORTHO05D005992 9.1e-103 377.5 302 58.3
C01p20050 Brassica napus HOM05D000434 ORTHO05D001445 9.1e-103 377.5 302 58.6
Gorai.003G107100 Gossypium raimondii HOM05D000434 ORTHO05D005992 3.5e-102 375.6 295 59.7
Zm00001eb306980 Zea mays HOM05D000434 ORTHO05D005992 3.5e-102 375.6 311 55.0
BolC1t01932H Brassica oleracea HOM05D000434 ORTHO05D001445 1.3e-101 373.6 302 57.9
Gohir.D03G101700 Gossypium hirsutum HOM05D000434 ORTHO05D005992 2.2e-101 372.9 295 59.3
SalBow5G4047 Salvia bowleyana HOM05D000434 ORTHO05D005992 2.9e-101 372.5 297 58.6
Aa31LG7G11150 Aethionema arabicum HOM05D000434 ORTHO05D005992 6.5e-101 371.3 305 55.4
HanXRQChr05g0154811 Helianthus annuus HOM05D000434 ORTHO05D005992 1.0e-98 364.0 311 55.9
Sed0024178 Sechium edule HOM05D000434 ORTHO05D005992 5.2e-98 361.7 278 59.4
Os08g0557200 Oryza sativa ssp. japonica HOM05D000434 ORTHO05D005992 1.2e-97 360.5 317 54.3
Zm00001eb176220 Zea mays HOM05D000434 ORTHO05D005992 2.6e-97 359.4 308 54.5
Pp3c23_9280 Physcomitrium patens HOM05D000434 ORTHO05D005992 1.8e-95 353.2 320 52.2
HanXRQChr02g0032551 Helianthus annuus HOM05D000434 ORTHO05D005992 3.1e-95 352.4 311 53.7
BcaC09g50836 Brassica carinata HOM05D000434 ORTHO05D001445 2.0e-94 349.7 302 55.6
Pp3c15_10910 Physcomitrium patens HOM05D000434 ORTHO05D005992 5.9e-94 348.2 305 51.8
PSO754G0021 Papaver somniferum HOM05D000434 ORTHO05D005992 1.3e-93 347.1 275 58.2
CBR_g48132 Chara braunii HOM05D000434 ORTHO05D005992 2.1e-91 339.7 308 51.6
unitig_22.g6297 Utricularia gibba HOM05D000434 ORTHO05D005992 1.0e-90 337.4 278 58.3
Migut.L00359 Erythranthe guttata HOM05D000434 ORTHO05D005992 1.3e-88 330.5 280 57.9
Gohir.D12G188312 Gossypium hirsutum HOM05D000434 ORTHO05D005992 8.3e-88 327.8 316 52.8
Gorai.008G202100 Gossypium raimondii HOM05D000434 ORTHO05D005992 8.3e-88 327.8 316 52.8
Mapoly0153s0032 Marchantia polymorpha HOM05D000434 ORTHO05D005992 6.6e-85 318.2 305 48.9
CSS0026928 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D005992 2.3e-82 309.7 207 65.2
Sabra15G0108100 Salix brachista HOM05D000434 ORTHO05D005992 1.8e-79 300.1 208 63.9
Migut.L00543 Erythranthe guttata HOM05D000434 ORTHO05D005992 3.0e-77 292.7 300 50.0
SHI03475 Sapria himalayana HOM05D000434 ORTHO05D005992 6.2e-75 285.0 292 49.0
ECA233G1405 Erigeron canadensis HOM05D000434 ORTHO05D005992 6.8e-74 281.6 246 55.3
SMO361G0760 Selaginella moellendorffii HOM05D000434 ORTHO05D005992 3.4e-73 279.3 305 46.2
SalBow5G4235 Salvia bowleyana HOM05D000434 ORTHO05D005992 2.1e-70 270.0 274 47.8
HPP92_020252 Vanilla planifolia HOM05D000434 ORTHO05D005992 4.4e-49 199.1 127 65.4
HanXRQChr09g0263851 Helianthus annuus HOM05D000434 ORTHO05D005992 1.7e-48 197.2 174 55.7
SalBow5G1355 Salvia bowleyana HOM05D000434 ORTHO05D005992 1.3e-35 154.5 256 35.5
Mapoly0043s0121 Marchantia polymorpha HOM05D000434 ORTHO05D005992 2.4e-34 150.2 303 32.7
MCO10G403 Micromonas commoda HOM05D000434 ORTHO05D005992 5.8e-33 145.6 325 28.3
Gohir.A12G185600 Gossypium hirsutum HOM05D000434 ORTHO05D005992 1.4e-31 141.0 85 75.3
Potri.015G085232 Populus trichocarpa HOM05D000434 ORTHO05D005992 1.3e-29 134.4 85 70.6
AagrBONN_evm.TU.Sc2ySwM_368.1237 Anthoceros agrestis HOM05D000434 ORTHO05D005992 7.6e-25 118.6 228 35.1
Pp3c2_17660 Physcomitrium patens HOM05D000434 ORTHO05D005992 1.4e-23 114.4 115 51.3
MCO14G418 Micromonas commoda HOM05D000434 ORTHO05D005992 1.6e-22 110.9 334 25.7
HPP92_020253 Vanilla planifolia HOM05D000434 ORTHO05D005992 1.9e-15 87.4 54 72.2
Oeu057324.1 Olea europaea HOM05D000434 ORTHO05D005992 2.8e-11 73.6 74 52.7


User provided reference genes

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